Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1135 results

4OWX
DownloadVisualize
BU of 4owx by Molmil
Structural basis of SOSS1 in complex with a 12nt ssDNA
Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Integrator complex subunit 3, SOSS complex subunit B1
Authors:Ren, W, Sun, Q, Tang, X, Song, H.
Deposit date:2014-02-04
Release date:2014-04-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of SOSS1 Complex Assembly and Recognition of ssDNA.
Cell Rep, 6, 2014
3HAI
DownloadVisualize
BU of 3hai by Molmil
Crystal structure of human PACSIN1 F-BAR domain (P21 lattice)
Descriptor: CALCIUM ION, human PACSIN1 F-BAR
Authors:Wang, Q, Navarro, M.V.A.S, Peng, G, Rajashankar, K.R, Sondermann, H.
Deposit date:2009-05-01
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.881 Å)
Cite:Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
Proc.Natl.Acad.Sci.USA, 106, 2009
2H40
DownloadVisualize
BU of 2h40 by Molmil
Crystal structure of the catalytic domain of unliganded PDE5
Descriptor: MAGNESIUM ION, ZINC ION, cGMP-specific 3',5'-cyclic phosphodiesterase
Authors:Wang, H, Liu, Y, Huai, Q, Cai, J, Zoraghi, R, Francis, S.H, Corbin, J.D, Robinson, H, Xin, Z, Lin, G, Ke, H.
Deposit date:2006-05-23
Release date:2006-06-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Multiple Conformations of Phosphodiesterase-5: Implications for enzyme function and drug development
J.Biol.Chem., 281, 2006
4AP9
DownloadVisualize
BU of 4ap9 by Molmil
Crystal structure of phosphoserine phosphatase from T. onnurineus in complex with NDSB-201
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, PHOSPHOSERINE PHOSPHATASE
Authors:Jung, T.-Y, Kim, Y.-S, Song, H.-N, Woo, E.
Deposit date:2012-03-31
Release date:2012-12-26
Last modified:2013-04-17
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:Identification of a Novel Ligand Binding Site in Phosphoserine Phosphatase from the Hyperthermophilic Archaeon Thermococcus Onnurineus.
Proteins, 81, 2013
1V9P
DownloadVisualize
BU of 1v9p by Molmil
Crystal Structure Of Nad+-Dependent DNA Ligase
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase, ZINC ION
Authors:Lee, J.Y, Chang, C, Song, H.K, Moon, J, Yang, J.K, Kim, H.K, Kwon, S.K, Suh, S.W.
Deposit date:2004-01-27
Release date:2004-03-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications.
Embo J., 19, 2000
1XSD
DownloadVisualize
BU of 1xsd by Molmil
Crystal structure of the BlaI repressor in complex with DNA
Descriptor: 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3', penicillinase repressor
Authors:Safo, M.K, Ko, T.-P, Musayev, F.N, Zhao, Q, Robinson, H, Scarsdale, N, Wang, A.H.-J, Archer, G.L.
Deposit date:2004-10-19
Release date:2005-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons
J.Bacteriol., 187, 2005
1TEN
DownloadVisualize
BU of 1ten by Molmil
STRUCTURE OF A FIBRONECTIN TYPE III DOMAIN FROM TENASCIN PHASED BY MAD ANALYSIS OF THE SELENOMETHIONYL PROTEIN
Descriptor: TENASCIN
Authors:Leahy, D.J, Hendrickson, W.A, Aukhil, I, Erickson, H.P.
Deposit date:1992-08-28
Release date:1993-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a fibronectin type III domain from tenascin phased by MAD analysis of the selenomethionyl protein.
Science, 258, 1992
3R1M
DownloadVisualize
BU of 3r1m by Molmil
Structure of bifunctional fructose 1,6-bisphosphate aldolase/phosphatase (aldolase form)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,3-DIHYDROXYACETONEPHOSPHATE, MAGNESIUM ION, ...
Authors:Fushinobu, S, Nishimasu, H, Hattori, D, Song, H.-J, Wakagi, T.
Deposit date:2011-03-10
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis for the bifunctionality of fructose-1,6-bisphosphate aldolase/phosphatase.
Nature, 478, 2011
2R62
DownloadVisualize
BU of 2r62 by Molmil
Crystal structure of Helicobacter pylori ATP dependent protease, FtsH
Descriptor: Cell division protease ftsH homolog
Authors:Kim, S.H, Kang, G.B, Song, H.-E, Park, S.J, Bae, M.-H, Eom, S.H.
Deposit date:2007-09-05
Release date:2008-09-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural studies on Helicobacter pyloriATP-dependent protease, FtsH
J.SYNCHROTRON RADIAT., 15, 2008
1TZM
DownloadVisualize
BU of 1tzm by Molmil
Crystal structure of ACC deaminase complexed with substrate analog b-chloro-D-alanine
Descriptor: 1-aminocyclopropane-1-carboxylate deaminase, 3-chloro-D-alanine, AMINO-ACRYLATE, ...
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-10
Release date:2004-11-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry, 43, 2004
1TZJ
DownloadVisualize
BU of 1tzj by Molmil
Crystal Structure of 1-aminocyclopropane-1-carboxylate deaminase complexed with d-vinyl glycine
Descriptor: 1-aminocyclopropane-1-carboxylate deaminase, D-VINYLGLYCINE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-10
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry, 43, 2004
1TZ2
DownloadVisualize
BU of 1tz2 by Molmil
Crystal structure of 1-aminocyclopropane-1-carboyxlate deaminase complexed with ACC
Descriptor: 1-AMINOCYCLOPROPANECARBOXYLIC ACID, 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE
Authors:Karthikeyan, S, Zhou, Q, Zhao, Z, Kao, C.L, Tao, Z, Robinson, H, Liu, H.W, Zhang, H.
Deposit date:2004-07-09
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Analysis of Pseudomonas 1-Aminocyclopropane-1-carboxylate Deaminase Complexes: Insight into the Mechanism of a Unique Pyridoxal-5'-phosphate Dependent Cyclopropane Ring-Opening Reaction
Biochemistry, 43, 2004
2R65
DownloadVisualize
BU of 2r65 by Molmil
Crystal structure of Helicobacter pylori ATP dependent protease, FtsH ADP complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division protease ftsH homolog
Authors:Kim, S.H, Kang, G.B, Song, H.-E, Park, S.J, Bae, M.-H, Eom, S.H.
Deposit date:2007-09-05
Release date:2008-09-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural studies on Helicobacter pyloriATP-dependent protease, FtsH
J.SYNCHROTRON RADIAT., 15, 2008
3RWA
DownloadVisualize
BU of 3rwa by Molmil
Crystal structure of circular-permutated mKate
Descriptor: Fluorescent protein FP480
Authors:Wang, Q, Byrnes, L, Sondermann, H.
Deposit date:2011-05-08
Release date:2011-06-15
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Circular permutation of red fluorescent proteins.
Plos One, 6, 2011
3RUJ
DownloadVisualize
BU of 3ruj by Molmil
Crystal Structure of N-terminal region of yeast Atg7
Descriptor: Ubiquitin-like modifier-activating enzyme ATG7
Authors:Hong, S.B, Kim, B.W, Song, H.K.
Deposit date:2011-05-05
Release date:2011-11-23
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Insights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8.
Nat.Struct.Mol.Biol., 18, 2011
2OPM
DownloadVisualize
BU of 2opm by Molmil
Human Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-461
Descriptor: 3-FLUORO-1-(2-HYDROXY-2,2-DIPHOSPHONOETHYL)PYRIDINIUM, Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)], MAGNESIUM ION, ...
Authors:Cao, R, Gao, Y.G, Robinson, H, Goddard, A.
Deposit date:2007-01-29
Release date:2007-12-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation.
J.Am.Chem.Soc., 131, 2009
2OUV
DownloadVisualize
BU of 2ouv by Molmil
crystal structure of pde10a2 mutant of D564N
Descriptor: MAGNESIUM ION, ZINC ION, cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A
Authors:Wang, H.C, Liu, Y.D, Hou, J, Zheng, M.Y, Robinson, H.
Deposit date:2007-02-12
Release date:2007-03-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:From the Cover: Structural insight into substrate specificity of phosphodiesterase 10.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4J40
DownloadVisualize
BU of 4j40 by Molmil
Crystal structure of the dual-domain GGDEF-EAL module of FimX from Pseudomonas aeruginosa
Descriptor: FimX
Authors:Navarro, M.V, De, N, Bae, N, Wang, Q, Sondermann, H.
Deposit date:2013-02-06
Release date:2013-02-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX.
Structure, 17, 2009
2OUY
DownloadVisualize
BU of 2ouy by Molmil
crystal structure of pde10a2 mutant D564A in complex with cAMP.
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, MAGNESIUM ION, ZINC ION, ...
Authors:Wang, H.C, Liu, Y.D, Hou, J, Zheng, M.Y, Robinson, H.
Deposit date:2007-02-12
Release date:2007-03-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:From the Cover: Structural insight into substrate specificity of phosphodiesterase 10.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4ELW
DownloadVisualize
BU of 4elw by Molmil
Structure of E. coli. 1,4-dihydroxy-2- naphthoyl coenzyme A synthases (MENB) in complex with nitrate
Descriptor: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, CHLORIDE ION, GLYCEROL, ...
Authors:Sun, Y.R, Song, H.G, Li, J, Jiang, M, Li, Y, Zhou, J.H, Guo, Z.H.
Deposit date:2012-04-11
Release date:2012-06-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.551 Å)
Cite:Active site binding and catalytic role of bicarbonate in 1,4-dihydroxy-2-naphthoyl coenzyme A synthases from vitamin K biosynthetic pathways
Biochemistry, 51, 2012
4IZA
DownloadVisualize
BU of 4iza by Molmil
Structure of Dually Phosphorylated ERK2 bound to the PEA-15 Death Effector Domain
Descriptor: Astrocytic phosphoprotein PEA-15, Mitogen-activated protein kinase 1
Authors:Mace, P.D, Robinson, H, Riedl, S.J.
Deposit date:2013-01-29
Release date:2013-04-10
Last modified:2013-04-24
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure of ERK2 bound to PEA-15 reveals a mechanism for rapid release of activated MAPK.
Nat Commun, 4, 2013
7FEQ
DownloadVisualize
BU of 7feq by Molmil
Cryo-EM structure of apo BsClpP at pH 6.5
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K.
Deposit date:2021-07-21
Release date:2022-07-06
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
1ZKL
DownloadVisualize
BU of 1zkl by Molmil
Multiple Determinants for Inhibitor Selectivity of Cyclic Nucleotide Phosphodiesterases
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, High-affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A, MAGNESIUM ION, ...
Authors:Wang, H, Liu, Y, Chen, Y, Robinson, H, Ke, H.
Deposit date:2005-05-03
Release date:2005-07-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Multiple elements jointly determine inhibitor selectivity of cyclic nucleotide phosphodiesterases 4 and 7
J.Biol.Chem., 280, 2005
2DS6
DownloadVisualize
BU of 2ds6 by Molmil
Structure of the ZBD in the tetragonal crystal form
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, ZINC ION
Authors:Park, E.Y, Lee, B.G, Hong, S.B, Song, H.K.
Deposit date:2006-06-22
Release date:2007-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
7FES
DownloadVisualize
BU of 7fes by Molmil
Cryo-EM structure of apo BsClpP at pH 4.2
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K.
Deposit date:2021-07-21
Release date:2022-07-06
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon