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PDB: 49 results

5J4W
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BU of 5j4w by Molmil
DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTGG) in sodium
Descriptor: DNA (5'-D(*GP*GP*TP*TP*TP*GP*GP*TP*TP*TP*TP*GP*GP*TP*TP*GP*G)-3')
Authors:Dvorkin, S.A, Webba da Silva, M.
Deposit date:2016-04-01
Release date:2017-04-12
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
5J6U
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BU of 5j6u by Molmil
DIY G-Quadruplexes: Solution Structure of d(GGGGTTTGGGGTTTTGGGGAAGGGG) in sodium
Descriptor: DNA (25-MER)
Authors:Dvorkin, S.A, Karsisiotis, A.I, Webba da Silva, M.
Deposit date:2016-04-05
Release date:2017-05-10
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
5J05
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BU of 5j05 by Molmil
DIY G-Quadruplexes: Solution structure of d(GGGTTTGGGTTTTGGGAGGG) in sodium
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*TP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*AP*GP*GP*G)-3')
Authors:Dvorkin, S.A, Karsisiotis, A.I, Webba da Silva, M.
Deposit date:2016-03-27
Release date:2017-04-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
1AJR
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BU of 1ajr by Molmil
REFINEMENT AND COMPARISON OF THE CRYSTAL STRUCTURES OF PIG CYTOSOLIC ASPARTATE AMINOTRANSFERASE AND ITS COMPLEX WITH 2-METHYLASPARTATE
Descriptor: ASPARTATE AMINOTRANSFERASE
Authors:Rhee, S, Silva, M.M, Hyde, C.C, Rogers, P.H, Metzler, C.M, Metzler, D.E, Arnone, A.
Deposit date:1997-05-08
Release date:1997-08-20
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Refinement and comparisons of the crystal structures of pig cytosolic aspartate aminotransferase and its complex with 2-methylaspartate.
J.Biol.Chem., 272, 1997
7N45
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BU of 7n45 by Molmil
Solution NMR structure of the N-terminal globular domain of the endemic HKU1 coronavirus nucleocapsid protein
Descriptor: Nucleoprotein
Authors:Caruso, I.P, Marques, A.L, Santana-Silva, M.C, Almeida, F.C.L, Amorim, G.C.
Deposit date:2021-06-03
Release date:2022-06-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of the N-terminal globular domain of the endemic HKU1 coronavirus nucleocapsid protein.
To Be Published
1S37
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BU of 1s37 by Molmil
Accomodation of Mispair-Aligned N3T-Ethyl-N3T DNA Interstrand Crosslink
Descriptor: DNA (5'-D(*CP*GP*AP*AP*AP*(TTM)P*TP*TP*TP*CP*G)-3'), DNA (5'-D(*CP*GP*AP*AP*AP*TP*TP*TP*TP*CP*G)-3')
Authors:da Silva, M.W, Noronha, A.M, Noll, D.M, Miller, P.S, Colvin, O.M, Gamcsik, M.P.
Deposit date:2004-01-12
Release date:2005-01-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Accommodation of mispair aligned N3T-ethyl-N3T DNA interstrand cross link.
Biochemistry, 43, 2004
1AJS
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BU of 1ajs by Molmil
REFINEMENT AND COMPARISON OF THE CRYSTAL STRUCTURES OF PIG CYTOSOLIC ASPARTATE AMINOTRANSFERASE AND ITS COMPLEX WITH 2-METHYLASPARTATE
Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID, ASPARTATE AMINOTRANSFERASE
Authors:Rhee, S, Silva, M.M, Hyde, C.C, Rogers, P.H, Metzler, C.M, Metzler, D.E, Arnone, A.
Deposit date:1997-05-08
Release date:1997-08-20
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Refinement and comparisons of the crystal structures of pig cytosolic aspartate aminotransferase and its complex with 2-methylaspartate.
J.Biol.Chem., 272, 1997
1BBB
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BU of 1bbb by Molmil
A THIRD QUATERNARY STRUCTURE OF HUMAN HEMOGLOBIN A AT 1.7-ANGSTROMS RESOLUTION
Descriptor: CARBON MONOXIDE, HEMOGLOBIN A (CARBONMONOXY) (ALPHA CHAIN), HEMOGLOBIN A (CARBONMONOXY) (BETA CHAIN), ...
Authors:Arnone, A, Silva, M.M.
Deposit date:1992-04-29
Release date:1993-10-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A third quaternary structure of human hemoglobin A at 1.7-A resolution.
J.Biol.Chem., 267, 1992
6V6H
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BU of 6v6h by Molmil
Crystal structure of histidine ammonia-lyase from Trypanosoma cruzi
Descriptor: Histidine ammonia-lyase
Authors:Miranda, R.R, Silva, M, Barison, M.J, Silber, A.M, Iulek, J.
Deposit date:2019-12-05
Release date:2020-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of histidine ammonia-lyase from Trypanosoma cruzi.
Biochimie, 175, 2020
6UEK
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BU of 6uek by Molmil
Structure of Urocanate Hydratase from Trypanosoma cruzi in complex with NAD+
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Urocanate hydratase
Authors:Boreiko, S, Silva, M, Melo, R.F.P, Silber, A.M, Iulek, J.
Deposit date:2019-09-21
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structure of Urocanate Hydratase from the protozoan Trypanosoma cruzi.
Int.J.Biol.Macromol., 146, 2019
5UR0
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BU of 5ur0 by Molmil
Crystallographic structure of glyceraldehyde-3-phosphate dehydrogenase from Naegleria gruberi
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION, ...
Authors:Machado, A.T.P, Silva, M, Iulek, J.
Deposit date:2017-02-09
Release date:2018-03-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural studies of glyceraldehyde-3-phosphate dehydrogenase from Naegleria gruberi, the first one from phylum Percolozoa.
Biochim. Biophys. Acta, 1866, 2018
1N4B
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BU of 1n4b by Molmil
Solution Structure of the undecamer CGAAAC*TTTCG
Descriptor: 5'-D(*CP*GP*AP*AP*AP*CP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*D00*TP*TP*TP*CP*G)-3'
Authors:Webba da Silva, M, Noronha, A.M, Noll, D.M, Miller, P.S, Colvin, O.M, Gamcsik, M.P.
Deposit date:2002-10-30
Release date:2003-11-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of a DNA Duplex Containing Mispair-Aligned N4C-Ethyl-N4C Interstrand Cross-Linked Cytosines
Biochemistry, 41, 2002
2LED
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BU of 2led by Molmil
Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M, Plavec, J, Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2LEE
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BU of 2lee by Molmil
Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M, Plavec, J, Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2M6V
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BU of 2m6v by Molmil
Solution NMR structure of the d(GGGTTGGGTTTTGGGTGGG) quadruplex in sodium conditions
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*TP*GP*GP*G)-3')
Authors:Karsisiotis, A.I, Webba da Silva, M.
Deposit date:2013-04-10
Release date:2014-07-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
1NYD
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BU of 1nyd by Molmil
Solution structure of DNA quadruplex GCGGTGGAT
Descriptor: 5'-D(*GP*CP*GP*GP*TP*GP*GP*AP*T)-3'
Authors:Webba da Silva, M.
Deposit date:2003-02-12
Release date:2004-02-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Association of DNA quadruplexes through G:C:G:C tetrads. Solution structure of d(GCGGTGGAT).
Biochemistry, 42, 2003
2MFU
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BU of 2mfu by Molmil
Solution NMR structure of quadruplex d(TGGGTTTGGGTTGGGTTTGGG) in sodium conditions
Descriptor: 5'-D(*TP*GP*GP*GP*TP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*TP*GP*GP*G)-3'
Authors:Karsisiotis, A, Dillon, P, Webba da Silva, M.
Deposit date:2013-10-23
Release date:2014-10-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution NMR structure of quadruplex d(TGGGTTTGGGTTGGGTTTGGG) in sodium conditions
To be Published
2M6W
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BU of 2m6w by Molmil
Solution NMR structure of the d(GGGGTTGGGGTTTTGGGGAAGGGG) quadruplex in sodium conditions
Descriptor: DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*AP*AP*GP*GP*GP*G)-3')
Authors:Karsisiotis, A.I, Webba da Silva, M.
Deposit date:2013-04-19
Release date:2014-07-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Encoding canonical DNA quadruplex structure.
Sci Adv, 4, 2018
2MFT
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BU of 2mft by Molmil
Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions
Descriptor: 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*TP*GP*GP*GP*TP*TP*TP*TP*GP*GP*G)-3'
Authors:Karsisiotis, A.I, Webba da Silva, M.
Deposit date:2013-10-22
Release date:2014-10-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions
To be Published
3KSC
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BU of 3ksc by Molmil
Crystal structure of pea prolegumin, an 11S seed globulin from Pisum sativum L.
Descriptor: GLYCEROL, LegA class, SULFATE ION
Authors:Tandang-Silvas, M.R.G, Fukuda, T, Fukuda, C, Prak, K, Cabanos, C, Kimura, A, Itoh, T, Mikami, B, Maruyama, N, Utsumi, S.
Deposit date:2009-11-21
Release date:2010-04-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 1804, 2010
3KGL
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BU of 3kgl by Molmil
Crystal structure of procruciferin, 11S globulin from Brassica napus
Descriptor: Cruciferin, GLYCEROL, SULFATE ION
Authors:Tandang-Silvas, M.R, Mikami, B, Maruyama, N, Utsumi, S.
Deposit date:2009-10-29
Release date:2010-04-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.981 Å)
Cite:Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 1804, 2010
3QAC
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BU of 3qac by Molmil
Structure of amaranth 11S proglobulin seed storage protein from Amaranthus hypochondriacus L.
Descriptor: 11S globulin seed storage protein
Authors:Tandang-Silvas, M.R, Carrazco-Pena, L, Barba de la Rosa, A.P, Osuna-Castro, J.A, Utsumi, S, Mikami, B, Maruyama, N.
Deposit date:2011-01-10
Release date:2012-01-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.275 Å)
Cite:Structure of amaranth 11S proglobulin, a major seed storage protein from Amaranthus hypochondriacus L.
To be Published
2XCK
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Crystal structure of PDK1 in complex with a pyrazoloquinazoline inhibitor
Descriptor: 1-METHYL-8-{[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}-N-[(2-METHYLPYRIDIN-4-YL)METHYL]-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE, 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1, GLYCEROL, ...
Authors:Angiolini, M, Banfi, P, Casale, E, Casuscelli, F, Fiorelli, C, Saccardo, M.B, Silvagni, M, Zuccotto, F.
Deposit date:2010-04-23
Release date:2010-07-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Based Optimization of Potent Pdk1 Inhibitors.
Bioorg.Med.Chem.Lett., 20, 2010
2XCH
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Crystal structure of PDK1 in complex with a pyrazoloquinazoline inhibitor
Descriptor: 3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1, 8-(CYCLOHEXA-2,5-DIEN-1-YLIDENEAMINO)-1-(PIPERIDIN-4-YLMETHYL)-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE, GLYCEROL, ...
Authors:Angiolini, M, Banfi, P, Casale, E, Casuscelli, F, Fiorelli, C, Saccardo, M.B, Silvagni, M, Zuccotto, F.
Deposit date:2010-04-23
Release date:2010-07-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Based Optimization of Potent Pdk1 Inhibitors.
Bioorg.Med.Chem.Lett., 20, 2010
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