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PDB: 103 results

7WLH
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BU of 7wlh by Molmil
The crystal structure of African swine fever virus I215L
Descriptor: E2 ubiquitin-conjugating enzyme
Authors:Shen, Z, Liang, R, Yang, Y, Peng, G.
Deposit date:2022-01-13
Release date:2023-07-19
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The crystal structure of African swine fever virus I215L
To Be Published
5XBC
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BU of 5xbc by Molmil
Crystal Structure Basis for PEDV nsp1
Descriptor: nsp1 protein
Authors:Shen, Z, Peng, G.Q.
Deposit date:2017-03-16
Release date:2017-12-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.249 Å)
Cite:Crystal Structure Basis for PEDV nsp1
To Be Published
6LP9
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BU of 6lp9 by Molmil
the protein of cat virus
Descriptor: nsp1 protein
Authors:Shen, Z, Peng, G.Q.
Deposit date:2020-01-09
Release date:2020-08-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Structural and Biological Basis of Alphacoronavirus nsp1 Associated with Host Proliferation and Immune Evasion.
Viruses, 12, 2020
7VWV
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BU of 7vwv by Molmil
The crystal structure of African swine fever virus I73R
Descriptor: I73R
Authors:Shen, Z, Liang, R.
Deposit date:2021-11-11
Release date:2022-11-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:African swine fever virus I73R is a critical virulence-related gene: A potential target for attenuation.
Proc.Natl.Acad.Sci.USA, 120, 2023
8EFY
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BU of 8efy by Molmil
Structure of double homo-hexameric AAA+ ATPase RuvB motors
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Holliday junction ATP-dependent DNA helicase RuvB, MAGNESIUM ION, ...
Authors:Shen, Z.F, Rish, A.D, Fu, T.M.
Deposit date:2022-09-10
Release date:2023-05-10
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structure of double homo-hexameric AAA+ ATPase RuvB motor binding with DNA substrate
To Be Published
6IVC
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BU of 6ivc by Molmil
The full length of TGEV nsp1
Descriptor: nsp1 protein
Authors:Shen, Z, Peng, G.Q.
Deposit date:2018-12-03
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A conserved region of nonstructural protein 1 from alphacoronaviruses inhibits host gene expression and is critical for viral virulence.
J.Biol.Chem., 294, 2019
6IVD
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BU of 6ivd by Molmil
TGEV nsp1 mutant - 91-95sg
Descriptor: nsp1 mutant protein
Authors:Shen, Z, Peng, G.Q.
Deposit date:2018-12-03
Release date:2019-08-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.975 Å)
Cite:A conserved region of nonstructural protein 1 from alphacoronaviruses inhibits host gene expression and is critical for viral virulence.
J.Biol.Chem., 294, 2019
7CQH
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BU of 7cqh by Molmil
Complex of TRP_CBS2 and Calmodulin_Clobe
Descriptor: AT15141p, CALCIUM ION, Transient receptor potential protein
Authors:Shen, Z.S.
Deposit date:2020-08-10
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Calmodulin binds to Drosophila TRP with an unexpected mode.
Structure, 29, 2021
7CQP
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BU of 7cqp by Molmil
Complex of TRPC4 and Calmodulin_Nlobe
Descriptor: CALCIUM ION, Calmodulin-1, Peptide from Short transient receptor potential channel 4
Authors:Shen, Z.S.
Deposit date:2020-08-11
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Calmodulin binds to Drosophila TRP with an unexpected mode.
Structure, 29, 2021
7CQV
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BU of 7cqv by Molmil
Complex of TRP_CBS1 and Calmodulin_Nlobe
Descriptor: AT15141p, CALCIUM ION, Transient receptor potential protein
Authors:Shen, Z.S.
Deposit date:2020-08-11
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Calmodulin binds to Drosophila TRP with an unexpected mode.
Structure, 29, 2021
2L8X
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BU of 2l8x by Molmil
Spatial structure of antimicrobial peptide Arenicin-2 dimer in DPC micelles
Descriptor: Arenicin-2
Authors:Shenkarev, Z.O, Trunov, K.I, Paramonov, A.S, Arseniev, A.S.
Deposit date:2011-01-27
Release date:2011-12-14
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Molecular mechanism of action of beta-hairpin antimicrobial peptide arenicin: oligomeric structure in dodecylphosphocholine micelles and pore formation in planar lipid bilayers
Biochemistry, 50, 2011
2LG4
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BU of 2lg4 by Molmil
3D solution structure of antimicrobial peptide aurelin
Descriptor: Aurelin
Authors:Shenkarev, Z, Altukhov, D.
Deposit date:2011-07-20
Release date:2012-07-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Recombinant expression and solution structure of antimicrobial peptide aurelin from jellyfish Aurelia aurita.
Biochem.Biophys.Res.Commun., 429, 2012
2LJ7
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BU of 2lj7 by Molmil
3D solution structure of plant defensin Lc-def
Descriptor: Defensin Lc-def
Authors:Shenkarev, Z, Mineev, K, Gizatullina, A.
Deposit date:2011-09-07
Release date:2012-09-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Heterologous expression and solution structure of defensin from lentil Lens culinaris.
Biochem.Biophys.Res.Commun., 451, 2014
1ZNU
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BU of 1znu by Molmil
Structure of cyclotide Kalata B1 in DPC micelles solution
Descriptor: Kalata B1
Authors:Shenkarev, Z.O, Nadezhdin, K.D, Sobol, V.A, Sobol, A.G, Skjeldal, L, Arseniev, A.S.
Deposit date:2005-05-12
Release date:2006-04-25
Last modified:2020-02-05
Method:SOLUTION NMR
Cite:Conformation and mode of membrane interaction in cyclotides. Spatial structure of kalata B1 bound to a dodecylphosphocholine micelle.
Febs J., 273, 2006
2M1F
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BU of 2m1f by Molmil
NMR Structure of Antiamoebin I (peptaibol antibiotic) bound to DMPC/DHPC bicelles
Descriptor: Antiamoebin I
Authors:Shenkarev, Z.O, Paramonov, A.S, Gizatullina, A.K.
Deposit date:2012-11-27
Release date:2012-12-12
Last modified:2013-10-02
Method:SOLUTION NMR
Cite:Peptaibol antiamoebin I: spatial structure, backbone dynamics, interaction with bicelles and lipid-protein nanodiscs, and pore formation in context of barrel-stave model.
Chem.Biodivers., 10, 2013
1IH9
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BU of 1ih9 by Molmil
NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles
Descriptor: ZERVAMICIN IIB
Authors:Shenkarev, Z.O, Balasheva, T.A, Efremov, R.G, Yakimenko, Z.A, Ovchinnikova, T.V, Raap, J, Arseniev, A.S.
Deposit date:2001-04-19
Release date:2002-02-13
Last modified:2012-12-12
Method:SOLUTION NMR
Cite:Spatial Structure of Zervamicin Iib Bound to Dpc Micelles: Implications for Voltage-Gating.
Biophys.J., 82, 2002
1R9U
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BU of 1r9u by Molmil
Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings
Descriptor: ZERVAMICIN IIB
Authors:Shenkarev, Z.O, Balashova, T.A, Yakimenko, Z.A, Ovchinnikova, T.V, Arseniev, A.S.
Deposit date:2003-10-31
Release date:2004-11-09
Last modified:2018-10-10
Method:SOLUTION NMR
Cite:Biosynthetic Uniform 13C,15N-Labelling of Zervamicin Iib. Complete 13C and 15N NMR Assignment.
J.Pept.Sci., 9, 2003
8Y65
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BU of 8y65 by Molmil
Cryo-EM structure of human urate transporter GLUT9 bound to substrate urate
Descriptor: Solute carrier family 2, facilitated glucose transporter member 9, URIC ACID
Authors:Pan, X.J, Shen, Z.L, Xu, L, Huang, G.X.Y.
Deposit date:2024-02-01
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Structural basis for urate recognition and apigenin inhibition of human GLUT9.
Nat Commun, 15, 2024
8Y66
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BU of 8y66 by Molmil
Cryo-EM structure of human urate transporter GLUT9 bound to inhibitor apigenin
Descriptor: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one, Solute carrier family 2, facilitated glucose transporter member 9
Authors:Pan, X.J, Shen, Z.L, Xu, L, Huang, G.X.Y.
Deposit date:2024-02-01
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structural basis for urate recognition and apigenin inhibition of human GLUT9.
Nat Commun, 15, 2024
8YHI
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BU of 8yhi by Molmil
The Crystal Structure of SHP1 from Biortus.
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Tyrosine-protein phosphatase non-receptor type 6
Authors:Wang, F, Cheng, W, Yuan, Z, Qi, J, Shen, Z.
Deposit date:2024-02-28
Release date:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Crystal Structure of SHP1 from Biortus.
To Be Published
6P05
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BU of 6p05 by Molmil
Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with compound 27
Descriptor: Bromodomain-containing protein 4, GLYCEROL, N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-(1-methyl-7-oxo-6,7-dihydro-1H-pyrrolo[2,3-c]pyridin-3-yl)-1H-indol-4-yl}ethanesulfonamide
Authors:Ratia, K.M, Xiong, R, Li, Y, Zhao, J, Gutgesell, L.M, Shen, Z, Dye, K, Dubrovyskyii, O, Zhao, H, Huang, F, Tonetti, D.A, Thatcher, G.R.
Deposit date:2019-05-16
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Novel Pyrrolopyridone Bromodomain and Extra-Terminal Motif (BET) Inhibitors Effective in Endocrine-Resistant ER+ Breast Cancer with Acquired Resistance to Fulvestrant and Palbociclib.
J.Med.Chem., 63, 2020
7RUH
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BU of 7ruh by Molmil
Bromodomain-containing protein 4 (BRD4) bromodomain 2 (BD2) complexed with XR844
Descriptor: Bromodomain-containing protein 4, N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-(5-{[(2-fluorophenyl)carbamoyl]amino}-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-1H-indol-4-yl}-2,2,2-trifluoroethane-1-sulfonamide
Authors:Ratia, K.M, Xiong, R, Li, Y, Shen, Z, Zhao, J, Huang, F, Dubrovyskyii, O, Thatcher, G.R.
Deposit date:2021-08-17
Release date:2022-08-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Bromodomain-containing protein 4 (BRD4) bromodomain 2 (BD2) complexed with XR844
To Be Published
7RUI
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BU of 7rui by Molmil
Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with XR844
Descriptor: Bromodomain-containing protein 4, N-{1-[1,1-di(pyridin-2-yl)ethyl]-6-(5-{[(2-fluorophenyl)carbamoyl]amino}-1-methyl-6-oxo-1,6-dihydropyridin-3-yl)-1H-indol-4-yl}-2,2,2-trifluoroethane-1-sulfonamide
Authors:Ratia, K.M, Xiong, R, Li, Y, Shen, Z, Zhao, J, Huang, F, Dubrovyskyii, O, Thatcher, G.R.
Deposit date:2021-08-17
Release date:2022-08-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with XR844
To Be Published
8DSD
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BU of 8dsd by Molmil
Human NAMPT in complex with substrate NAM and small molecule activator NP-A1-S
Descriptor: (3S)-1-[2-(4-methylphenyl)-2H-pyrazolo[3,4-d]pyrimidin-4-yl]-N-{[4-(methylsulfanyl)phenyl]methyl}piperidine-3-carboxamide, CHLORIDE ION, GLYCEROL, ...
Authors:Ratia, K, Xiong, R, Shen, Z, Thatcher, G.R.
Deposit date:2022-07-22
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.429 Å)
Cite:Mechanism of Allosteric Modulation of Nicotinamide Phosphoribosyltransferase to Elevate Cellular NAD.
Biochemistry, 62, 2023
8DSI
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BU of 8dsi by Molmil
Human NAMPT in complex with substrate NAM
Descriptor: CHLORIDE ION, GLYCEROL, NICOTINAMIDE, ...
Authors:Ratia, K, Xiong, R, Shen, Z, Thatcher, G.R.
Deposit date:2022-07-22
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Mechanism of Allosteric Modulation of Nicotinamide Phosphoribosyltransferase to Elevate Cellular NAD.
Biochemistry, 62, 2023

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