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PDB: 792 件
7EM5
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Crystal structure of the PI5P4Kbeta F205L-XTP complex
分子名称: Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7EM4
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Crystal structure of the PI5P4Kbeta F205L-ITP complex
分子名称: INOSINE-5'-DIPHOSPHATE, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7EM1
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Crystal structure of the PI5P4Kbeta-ITP complex
分子名称: INOSINE-5'-DIPHOSPHATE, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7EM2
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BU of 7em2 by Molmil
Crystal structure of the PI5P4Kbeta-XTP complex
分子名称: Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
3NJV
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Rhamnogalacturonan lyase from Aspergillus aculeatus K150A substrate complex
分子名称: CALCIUM ION, Rhamnogalacturonase B, SULFATE ION, ...
著者Jensen, M.H, Otten, H, Christensen, U, Borchert, T.V, Christensen, L.L.H, Larsen, S, Lo Leggio, L.
登録日2010-06-18
公開日2010-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural and Biochemical Studies Elucidate the Mechanism of Rhamnogalacturonan Lyase from Aspergillus aculeatus.
J.Mol.Biol., 404, 2010
7E18
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Crystal structure of SAR-CoV-2 3CL protease complex with inhibitor YH-53
分子名称: 1,2-ETHANEDIOL, N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide, Replicase polyprotein 1ab
著者Senda, M, Konno, S, Hayashi, Y, Senda, T.
登録日2021-02-01
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献3CL Protease Inhibitors with an Electrophilic Arylketone Moiety as Anti-SARS-CoV-2 Agents.
J.Med.Chem., 65, 2022
7E19
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Crystal structure of SAR-CoV-2 3CL protease complex with inhibitor SH-5
分子名称: (phenylmethyl) N-[(2S)-1-[[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate, 3C-like proteinase
著者Senda, M, Konno, S, Hayashi, Y, Senda, T.
登録日2021-02-01
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献3CL Protease Inhibitors with an Electrophilic Arylketone Moiety as Anti-SARS-CoV-2 Agents.
J.Med.Chem., 65, 2022
4HYT
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Na,K-ATPase in the E2P state with bound ouabain and Mg2+ in the cation-binding site
分子名称: 1-O-decanoyl-beta-D-tagatofuranosyl beta-D-allopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Laursen, M, Yatime, L, Nissen, P, Fedosova, N.U.
登録日2012-11-14
公開日2013-06-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.404 Å)
主引用文献Crystal structure of the high-affinity Na+,K+-ATPase-ouabain complex with Mg2+ bound in the cation binding site.
Proc.Natl.Acad.Sci.USA, 110, 2013
3NJX
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Rhamnogalacturonan Lyase from Aspergillus aculeatus mutant H210A
分子名称: CALCIUM ION, Rhamnogalacturonase B, SULFATE ION
著者Jensen, M.H, Otten, H, Christensen, U, Borchert, T.V, Christensen, L.L.H, Larsen, S, Lo Leggio, L.
登録日2010-06-18
公開日2010-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structural and Biochemical Studies Elucidate the Mechanism of Rhamnogalacturonan Lyase from Aspergillus aculeatus.
J.Mol.Biol., 404, 2010
7DNM
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BU of 7dnm by Molmil
Crystal structure of the AgCarB2-C2 complex
分子名称: AP_endonuc_2 domain-containing protein, AgCarC2, IODIDE ION, ...
著者Senda, M, Kumano, T, Watanabe, S, Kobayashi, M, Senda, T.
登録日2020-12-10
公開日2021-10-20
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the metabolism of xenobiotic C-glycosides by intestinal bacteria
Nat Commun, 2021
4ZOR
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BU of 4zor by Molmil
The structure of the S37P MS2 viral capsid assembly.
分子名称: Coat protein, PHOSPHATE ION
著者Asensio, M.A, Sankaran, B, Zwart, P.H, Tullman-Ercek, D.
登録日2015-05-06
公開日2016-09-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A Selection for Assembly Reveals That a Single Amino Acid Mutant of the Bacteriophage MS2 Coat Protein Forms a Smaller Virus-like Particle.
Nano Lett., 16, 2016
7DVE
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BU of 7dve by Molmil
Crystal structure of FAD-dependent C-glycoside oxidase
分子名称: 6'''-hydroxyparomomycin C oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
著者Senda, M, Watanabe, S, Kumano, T, Kobayashi, M, Senda, T.
登録日2021-01-13
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献FAD-dependent C -glycoside-metabolizing enzymes in microorganisms: Screening, characterization, and crystal structure analysis.
Proc.Natl.Acad.Sci.USA, 118, 2021
2Z8Q
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BU of 2z8q by Molmil
ferredoxin from Pyrococcus furiosus, D14C variant
分子名称: COBALT HEXAMMINE(III), Ferredoxin, IRON/SULFUR CLUSTER
著者Johannessen, M.N, Christensen, H.E.M, Harris, P.
登録日2007-09-07
公開日2007-09-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The crystal structure of the all cysteinyl coordinated D14C variant of [4Fe-4S] Pyrococcus furiosus ferredoxin
To be Published
7EM6
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BU of 7em6 by Molmil
Crystal structure of the PI5P4Kbeta N203D-ITP complex
分子名称: INOSINE-5'-DIPHOSPHATE, Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
7EM8
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Crystal structure of the PI5P4Kbeta T201M-2a-ATP complex
分子名称: Phosphatidylinositol 5-phosphate 4-kinase type-2 beta, [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Senda, M, Senda, T.
登録日2021-04-13
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity.
Structure, 30, 2022
4LZI
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BU of 4lzi by Molmil
Characterization of Solanum tuberosum Multicystatin and Significance of Core Domains
分子名称: Multicystatin
著者Nissen, M.S, Kumar, G.N, Green, A.R, Knowles, N.R, Kang, C.
登録日2013-07-31
公開日2014-02-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Characterization of Solanum tuberosum Multicystatin and the Significance of Core Domains.
Plant Cell, 25, 2013
5ZLG
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BU of 5zlg by Molmil
Human duodenal cytochrome b (Dcytb) in zinc ion and ascorbate bound form
分子名称: ASCORBIC ACID, Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Ganasen, M, Togashi, H, Mauk, G.A, Shiro, Y, Sawai, H, Sugimoto, H.
登録日2018-03-27
公開日2018-10-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
5ZLE
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BU of 5zle by Molmil
Human duodenal cytochrome b (Dcytb) in substrate free form
分子名称: Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE
著者Ganasen, M, Togashi, H, Mauk, G.A, Shiro, Y, Sawai, H, Sugimoto, H.
登録日2018-03-27
公開日2018-10-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
6P2U
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BU of 6p2u by Molmil
Structure of Mortalin-NBD with N6-propargyladenosine-5'-diphosphate
分子名称: 9-{5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-alpha-D-ribofuranosyl}-N-(prop-2-yn-1-yl)-9H-purin-6-amine, MAGNESIUM ION, PHOSPHATE ION, ...
著者Moseng, M.A, Page, R.C.
登録日2019-05-22
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献2- and N6-functionalized adenosine-5'-diphosphate analogs for the inhibition of mortalin.
Febs Lett., 593, 2019
6PMT
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BU of 6pmt by Molmil
Structure of Mortalin-NBD with adenosine-5'-monophosphate and thiodiphosphate
分子名称: ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, Stress-70 protein, ...
著者Moseng, M.A, Nix, J.C, Page, R.C.
登録日2019-07-02
公開日2020-07-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the mortalin nucleotide binding domain in complex with adenosine monophosphate
to be published
3FGO
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Crystal Structure of the E2 magnesium fluoride complex of the (SR) Ca2+-ATPase with bound CPA and AMPPCP
分子名称: (6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6,6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2,3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE, ACETATE ION, MAGNESIUM ION, ...
著者Laursen, M, Bublitz, M, Moncoq, K, Olesen, C, Moller, J.V, Young, H.S, Nissen, P, Morth, J.P.
登録日2008-12-08
公開日2009-04-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Cyclopiazonic acid is complexed to a divalent metal ion when bound to the sarcoplasmic reticulum Ca2+-ATPase.
J.Biol.Chem., 2009
3BHO
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BU of 3bho by Molmil
Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im with Ap4A
分子名称: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Cleavage and polyadenylation specificity factor subunit 5
著者Coseno, M, Doublie, S.
登録日2007-11-28
公開日2008-02-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the 25 kDa subunit of human cleavage factor Im.
Nucleic Acids Res., 36, 2008
3BAP
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Crystal Structure of the 25 kDa Subunit of Human Cleavage Factor Im
分子名称: Cleavage and polyadenylation specificity factor subunit 5, GLYCEROL
著者Coseno, M, Doublie, S.
登録日2007-11-08
公開日2008-02-19
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the 25 kDa subunit of human cleavage factor Im.
Nucleic Acids Res., 36, 2008
4C1I
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Selective Inhibitors of PDE2, PDE9, and PDE10: Modulators of Activity of the Central Nervous System
分子名称: (2S,3R)-3-(6-amino-9H-purin-9-yl)nonan-2-ol, CGMP-DEPENDENT 3', 5'-CYCLIC PHOSPHODIESTERASE, ...
著者Jorgensen, M, Kehler, J, Langgard, M, Svenstrup, N, Tagmose, L.
登録日2013-08-12
公開日2014-08-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Chapter 4: Selective Inhibitors of Pde2, Pde9, and Pde10: Modulators of Activity of the Central Nervous System
To be Published
4C9S
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BACTERIAL CHALCONE ISOMERASE IN open CONFORMATION FROM EUBACTERIUM RAMULUS AT 1.8 A RESOLUTION
分子名称: CHALCONE ISOMERASE, CHLORIDE ION, GLYCEROL, ...
著者Thomsen, M, Palm, G.J, Hinrichs, W.
登録日2013-10-03
公開日2014-10-22
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure and Catalytic Mechanism of the Evolutionarily Unique Bacterial Chalcone Isomerase
Acta Crystallogr.,Sect.D, 71, 2015

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