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PDB: 57 results

2GIF
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BU of 2gif by Molmil
Asymmetric structure of trimeric AcrB from Escherichia coli
Descriptor: Acriflavine resistance protein B, CITRATE ANION
Authors:Seeger, M.A, Schiefner, A, Eicher, T, Verrey, F, Diederichs, K, Pos, K.M.
Deposit date:2006-03-28
Release date:2006-09-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Asymmetry of AcrB Trimer Suggests a Peristaltic Pump Mechanism.
Science, 313, 2006
2HRT
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BU of 2hrt by Molmil
Asymmetric structure of trimeric AcrB from Escherichia coli
Descriptor: Acriflavine resistance protein B, CITRATE ANION
Authors:Seeger, M.A, Schiefner, A, Eicher, T, Verrey, F, Diederichs, K, Pos, K.M.
Deposit date:2006-07-20
Release date:2006-09-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Asymmetry of AcrB Trimer Suggests a Peristaltic Pump Mechanism.
Science, 313, 2006
4J8Y
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BU of 4j8y by Molmil
E3_5 DARPin D77S mutant
Descriptor: DARPin_E3_5_D77S
Authors:Seeger, M.A, Gruetter, M.G.
Deposit date:2013-02-15
Release date:2013-08-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design, construction, and characterization of a second-generation DARPin library with reduced hydrophobicity.
Protein Sci., 22, 2013
4J7W
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BU of 4j7w by Molmil
E3_5 DARPin L86A mutant
Descriptor: DARPin_E3_5_L86A
Authors:Seeger, M.A, Gruetter, M.G.
Deposit date:2013-02-14
Release date:2013-08-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Design, construction, and characterization of a second-generation DARPin library with reduced hydrophobicity.
Protein Sci., 22, 2013
9FZD
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BU of 9fzd by Molmil
Structure of OmpA-long in complex with nanobody Nb39
Descriptor: Nanobody 39, Outer membrane protein A
Authors:Ackle, F, Sorgenfrei, M, Seeger, M.A.
Deposit date:2024-07-05
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Rapid detection and capture of clinical Escherichia coli strains mediated by OmpA-targeting nanobodies
To Be Published
9FZC
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BU of 9fzc by Molmil
Structure of OmpA-short in complex with nanobody Nb01
Descriptor: CALCIUM ION, N-OCTANE, Nanobody 01, ...
Authors:Ackle, F, Sorgenfrei, M, Seeger, M.A.
Deposit date:2024-07-05
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Rapid detection and capture of clinical Escherichia coli strains mediated by OmpA-targeting nanobodies
To Be Published
6QV1
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BU of 6qv1 by Molmil
Structure of ATPgS-bound outward-facing TM287/288 in complex with nanobody Nb_TM1
Descriptor: ABC transporter, ATP-binding protein, MAGNESIUM ION, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (3.48 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6QV2
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BU of 6qv2 by Molmil
Structure of ATPgS-bound outward-facing TM287/288 in complex with nanobody Nb_TM#2
Descriptor: ABC transporter, ATP-binding protein, MAGNESIUM ION, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (4.23 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6QUZ
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BU of 6quz by Molmil
Structure of ATPgS-bound outward-facing TM287/288 in complex with sybody Sb_TM35
Descriptor: ABC transporter, ATP-binding protein, MAGNESIUM ION, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6QV0
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BU of 6qv0 by Molmil
Structure of ATP-bound outward-facing TM287/288 in complex with sybody Sb_TM35
Descriptor: ABC transporter, ATP-binding protein, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Hutter, C.A.J, Huerlimann, L.M, Zimmermann, I, Egloff, P, Seeger, M.A.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-06-05
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:The extracellular gate shapes the energy profile of an ABC exporter.
Nat Commun, 10, 2019
6LZ2
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BU of 6lz2 by Molmil
Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb44)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, GLYCEROL, ...
Authors:Cai, H, Yao, H, Li, T, Hutter, C, Tang, Y, Li, Y, Seeger, M, Li, D.
Deposit date:2020-02-17
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:An improved fluorescent tag and its nanobodies for membrane protein expression, stability assay, and purification.
Commun Biol, 3, 2020
6ZBV
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BU of 6zbv by Molmil
Inward-open structure of human glycine transporter 1 in complex with a benzoylisoindoline inhibitor and sybody Sb_GlyT1#7
Descriptor: Sodium- and chloride-dependent glycine transporter 1,Sodium- and chloride-dependent glycine transporter 1, Sybody Sb_GlyT1#7, [5-fluoranyl-6-(oxan-4-yloxy)-1,3-dihydroisoindol-2-yl]-[5-methylsulfonyl-2-[2,2,3,3,3-pentakis(fluoranyl)propoxy]phenyl]methanone
Authors:Shahsavar, A, Stohler, P, Bourenkov, G, Zimmermann, I, Siegrist, M, Guba, W, Pinard, E, Sinning, S, Seeger, M.A, Schneider, T.R, Dawson, R.J.P, Nissen, P.
Deposit date:2020-06-09
Release date:2021-03-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural insights into the inhibition of glycine reuptake.
Nature, 591, 2021
7CZ0
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BU of 7cz0 by Molmil
Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb92)
Descriptor: ACETATE ION, CACODYLATE ION, CACODYLIC ACID, ...
Authors:Cai, H, Yao, H, Li, T, Hutter, C, Tang, Y, Li, Y, Seeger, M, Li, D.
Deposit date:2020-09-06
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:An improved fluorescent protein tag and its nanobodies for membrane protein expression, stability assay, and purification
To Be Published
8PNL
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BU of 8pnl by Molmil
Outward-open conformation of a Major Facilitator Superfamily (MFS) transporter MHAS2168, a homologue of Rv1410 from M. tuberculosis, in complex with an alpaca nanobody
Descriptor: Nb_H2, Putative triacylglyceride transporter
Authors:Remm, S, Schoeppe, J, Hutter, C.A.J, Gonda, I, Seeger, M.A.
Deposit date:2023-06-30
Release date:2023-10-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for triacylglyceride extraction from mycobacterial inner membrane by MFS transporter Rv1410.
Nat Commun, 14, 2023
3QF4
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BU of 3qf4 by Molmil
Crystal structure of a heterodimeric ABC transporter in its inward-facing conformation
Descriptor: ABC transporter, ATP-binding protein, MAGNESIUM ION, ...
Authors:Hohl, M, Briand, C, Gruetter, M.G, Seeger, M.A.
Deposit date:2011-01-21
Release date:2012-03-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of a heterodimeric ABC transporter in its inward-facing conformation
Nat.Struct.Mol.Biol., 19, 2012
6TEJ
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BU of 6tej by Molmil
Structure of apo IrtAB devoid SID in complex with sybody Syb_NL5
Descriptor: DECYL-BETA-D-MALTOPYRANOSIDE, Drug ABC transporter ATP-binding protein, NICKEL (II) ION, ...
Authors:Gonda, I, Arnold, F.M, Hutter, C.A.J, Weber, M.S, Seeger, M.A, Hurlimann, L.M.
Deposit date:2019-11-12
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The ABC exporter IrtAB imports and reduces mycobacterial siderophores.
Nature, 580, 2020
6TEK
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BU of 6tek by Molmil
Structure of siderophore interaction domain of IrtAB
Descriptor: Drug ABC transporter ATP-binding protein, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Arnold, F.M, Gonda, I, Hutter, C.A.J, Seeger, M.A, Hurlimann, L.M.
Deposit date:2019-11-12
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The ABC exporter IrtAB imports and reduces mycobacterial siderophores.
Nature, 580, 2020
4DX5
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BU of 4dx5 by Molmil
Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop
Descriptor: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE, Acriflavine resistance protein B, DARPIN, ...
Authors:Eicher, T, Cha, H, Seeger, M.A, Brandstaetter, L, El-Delik, J, Bohnert, J.A, Kern, W.V, Verrey, F, Gruetter, M.G, Diederichs, K, Pos, K.M.
Deposit date:2012-02-27
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop.
Proc.Natl.Acad.Sci.USA, 109, 2012
4DX7
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BU of 4dx7 by Molmil
Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop
Descriptor: Acriflavine resistance protein B, DARPIN, DECANE, ...
Authors:Eicher, T, Cha, H, Seeger, M.A, Brandstaetter, L, El-Delik, J, Bohnert, J.A, Kern, W.V, Verrey, F, Gruetter, M.G, Diederichs, K, Pos, K.M.
Deposit date:2012-02-27
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.253 Å)
Cite:Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop.
Proc.Natl.Acad.Sci.USA, 109, 2012
4DX6
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BU of 4dx6 by Molmil
Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop
Descriptor: Acriflavine resistance protein B, DARPIN, DODECYL-BETA-D-MALTOSIDE
Authors:Eicher, T, Cha, H, Seeger, M.A, Brandstaetter, L, El-Delik, J, Bohnert, J.A, Kern, W.V, Verrey, F, Gruetter, M.G, Diederichs, K, Pos, K.M.
Deposit date:2012-02-27
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop.
Proc.Natl.Acad.Sci.USA, 109, 2012
7B73
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BU of 7b73 by Molmil
Insight into the molecular determinants of thermal stability in halohydrin dehalogenase HheD2.
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Short-chain dehydrogenase/reductase SDR
Authors:Wessel, J, Petrillo, G, Estevez, M, Bosh, S, Seeger, M, Dijkman, W.P, Hidalgo, A, Uson, I, Osuna, S, Schallmey, A.
Deposit date:2020-12-09
Release date:2021-04-07
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Insights into the molecular determinants of thermal stability in halohydrin dehalogenase HheD2.
Febs J., 288, 2021
5F5U
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BU of 5f5u by Molmil
Crystal structure of the Snu23-Prp38-MFAP1(217-258) complex of Chaetomium thermophilum
Descriptor: Prp38, Putative uncharacterized protein, Zinc finger domain-containing protein
Authors:Ulrich, A.K.C, Seeger, M, Bartlick, N, Wahl, M.C.
Deposit date:2015-12-04
Release date:2016-10-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.748 Å)
Cite:Scaffolding in the Spliceosome via Single alpha Helices.
Structure, 24, 2016
5F5V
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BU of 5f5v by Molmil
Crystal structure of the Snu23-Prp38-MFAP1(217-296) complex of Chaetomium thermophilum
Descriptor: Prp38, Putative uncharacterized protein, Zinc finger domain-containing protein
Authors:Ulrich, A.K.C, Seeger, M, Bartlick, N, Wahl, M.C.
Deposit date:2015-12-04
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Scaffolding in the Spliceosome via Single alpha Helices.
Structure, 24, 2016
5OH6
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BU of 5oh6 by Molmil
Legionella pneumophila RidL N-terminal domain lacking beta hairpin
Descriptor: Interaptin
Authors:Baerlocher, K, Hutter, C.A.J, Swart, A.L, Steiner, B, Welin, A, Hohl, M, Letourneur, F, Seeger, M.A, Hilbi, H.
Deposit date:2017-07-14
Release date:2017-11-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural insights into Legionella RidL-Vps29 retromer subunit interaction reveal displacement of the regulator TBC1D5.
Nat Commun, 8, 2017
5OH5
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BU of 5oh5 by Molmil
Legionella pneumophila RidL N-terminal retromer binding domain
Descriptor: RidL
Authors:Baerlocher, K, Hutter, C.A.J, Swart, A.L, Steiner, B, Welin, A, Hohl, M, Letourneur, F, Seeger, M.A, Hilbi, H.
Deposit date:2017-07-14
Release date:2017-11-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into Legionella RidL-Vps29 retromer subunit interaction reveal displacement of the regulator TBC1D5.
Nat Commun, 8, 2017

 

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