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PDB: 567 件

2PUE
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CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES
分子名称: ADENINE, DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), PROTEIN (PURINE REPRESSOR )
著者Lu, F, Schumacher, M.A, Arvidson, D.N, Haldimann, A, Wanner, B.L, Zalkin, H, Brennan, R.G.
登録日1997-10-04
公開日1998-05-06
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure-based redesign of corepressor specificity of the Escherichia coli purine repressor by substitution of residue 190.
Biochemistry, 37, 1998
4OVW
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ENDOGLUCANASE I COMPLEXED WITH EPOXYBUTYL CELLOBIOSE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(beta-D-glucopyranosyloxy)-2,2-dihydroxybutyl propanoate, ENDOGLUCANASE I
著者Davies, G.J, Schulein, M.
登録日1997-10-06
公開日1998-04-08
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the endoglucanase I from Fusarium oxysporum: native, cellobiose, and 3,4-epoxybutyl beta-D-cellobioside-inhibited forms, at 2.3 A resolution.
Biochemistry, 36, 1997
3GXQ
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Structure of ArtA and DNA complex
分子名称: DNA (5'-D(*AP*CP*AP*TP*GP*AP*CP*AP*TP*G)-3'), DNA (5'-D(*AP*CP*AP*TP*GP*TP*CP*AP*TP*GP*T)-3'), Putative regulator of transfer genes ArtA
著者Ni, L, Firth, N, Schumacher, M.A.
登録日2009-04-02
公開日2009-10-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The Staphylococcus aureus pSK41 plasmid-encoded ArtA protein is a master regulator of plasmid transmission genes and contains a RHH motif used in alternate DNA-binding modes.
Nucleic Acids Res., 37, 2009
1OJJ
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Anatomy of glycosynthesis: Structure and kinetics of the Humicola insolens Cel7BE197A and E197S glycosynthase mutants
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ENDOGLUCANASE I, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Ducros, V.M.-A, Tarling, C.A, Zechel, D.L, Brzozowski, A.M, Frandsen, T.P, Von Ossowski, I, Schulein, M, Withers, S.G, Davies, G.J.
登録日2003-07-10
公開日2004-01-07
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Anatomy of Glycosynthesis: Structure and Kinetics of the Humicola Insolens Cel7B E197A and E197S Glycosynthase Mutants
Chem.Biol., 10, 2003
3NXC
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Molecular mechanism by which the Escherichia coli nucleoid occlusion factor, SlmA, keeps cytokinesis in check
分子名称: HTH-type protein slmA
著者Tonthat, N.K, Schumacher, M.A.
登録日2010-07-13
公開日2011-02-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check.
Embo J., 30, 2011
2VE4
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Substrate free cyanobacterial CYP120A1
分子名称: PROTOPORPHYRIN IX CONTAINING FE, PUTATIVE CYTOCHROME P450 120
著者Kuhnel, K, Ke, N, Sligar, S.G, Schuler, M.A, Schlichting, I.
登録日2007-10-16
公開日2008-04-29
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structures of Substrate-Free and Retinoic Acid-Bound Cyanobacterial Cytochrome P450 Cyp120A1.
Biochemistry, 47, 2008
2MF0
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Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer L of RsmZ(1-72)/RsmE(dimer) 1to3 complex
分子名称: Carbon storage regulator homolog, RNA_(72-MER)
著者Duss, O, Michel, E, Yulikov, M, Schubert, M, Jeschke, G, Allain, F.H.-T.
登録日2013-10-02
公開日2014-05-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis of the non-coding RNA RsmZ acting as a protein sponge.
Nature, 509, 2014
2MF1
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Structural basis of the non-coding RNA RsmZ acting as protein sponge: Conformer R of RsmZ(1-72)/RsmE(dimer) 1to3 complex
分子名称: Carbon storage regulator homolog, RNA_(72-MER)
著者Duss, O, Michel, E, Yulikov, M, Schubert, M, Jeschke, G, Allain, F.H.-T.
登録日2013-10-02
公開日2014-05-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis of the non-coding RNA RsmZ acting as a protein sponge.
Nature, 509, 2014
3M8E
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Protein structure of Type III plasmid segregation TubR
分子名称: Putative DNA-binding protein
著者Ni, L, Schumacher, M.A.
登録日2010-03-17
公開日2010-07-07
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献From the Cover: Plasmid protein TubR uses a distinct mode of HTH-DNA binding and recruits the prokaryotic tubulin homolog TubZ to effect DNA partition.
Proc.Natl.Acad.Sci.USA, 107, 2010
3HTA
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Crystal structure of multidrug binding protein EbrR complexed with imidazole
分子名称: EbrA repressor, IMIDAZOLE
著者Dong, J, Ni, L, Schumacher, M, Brennan, R.
登録日2009-06-11
公開日2010-07-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR
To be Published
3HTI
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Crystal structure of multidrug binding protein EbrR complexed with malachite green
分子名称: EbrA repressor, MALACHITE GREEN
著者Dong, J, Ni, L, Schumacher, M, Brennan, R.
登録日2009-06-11
公開日2010-07-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR
To be Published
4CE5
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BU of 4ce5 by Molmil
First crystal structure of an (R)-selective omega-transaminase from Aspergillus terreus
分子名称: AT-OMEGATA, CALCIUM ION, CHLORIDE ION, ...
著者Lyskowski, A, Gruber, C, Steinkellner, G, Schurmann, M, Schwab, H, Gruber, K, Steiner, K.
登録日2013-11-08
公開日2014-02-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Crystal Structure of an (R)-Selective Omega-Transaminase from Aspergillus Terreus
Plos One, 9, 2014
2ENG
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ENDOGLUCANASE V
分子名称: ENDOGLUCANASE V
著者Davies, G.J, Schulein, M.
登録日1995-06-29
公開日1996-12-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structures of oligosaccharide-bound forms of the endoglucanase V from Humicola insolens at 1.9 A resolution.
Biochemistry, 34, 1995
6HLL
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Crystal structure of the Neurokinin 1 receptor in complex with the small molecule antagonist CP-99,994
分子名称: (2~{S},3~{S})-~{N}-[(2-methoxyphenyl)methyl]-2-phenyl-piperidin-3-amine, Substance-P receptor,GlgA glycogen synthase,Substance-P receptor
著者Schoppe, J, Ehrenmann, J, Klenk, C, Rucktooa, P, Schutz, M, Dore, A.S, Pluckthun, A.
登録日2018-09-11
公開日2019-01-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.27 Å)
主引用文献Crystal structures of the human neurokinin 1 receptor in complex with clinically used antagonists.
Nat Commun, 10, 2019
1BDI
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PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), HYPOXANTHINE, PROTEIN (PURINE REPRESSOR)
著者Glasfeld, A, Schumacher, M.A, Choi, K.Y, Zalkin, H, Brennan, R.G.
登録日1996-07-25
公開日1997-04-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A Positively Charged Residue Bound in the Minor Groove Does not Alter the Bending of a DNA Duplex
J.Am.Chem.Soc., 118, 1996
1PRV
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称: PURINE REPRESSOR
著者Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日1995-05-08
公開日1996-03-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
1PRU
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PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING
分子名称: PURINE REPRESSOR
著者Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y.
登録日1995-05-08
公開日1996-03-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
Structure, 3, 1995
2BVW
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CELLOBIOHYDROLASE II (CEL6A) FROM HUMICOLA INSOLENS IN COMPLEX WITH GLUCOSE AND CELLOTETRAOSE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CELLOBIOHYDROLASE II, GLYCEROL, ...
著者Varrot, A, Davies, G.J, Schulein, M.
登録日1999-02-18
公開日2000-02-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural changes of the active site tunnel of Humicola insolens cellobiohydrolase, Cel6A, upon oligosaccharide binding.
Biochemistry, 38, 1999
1OVW
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ENDOGLUCANASE I COMPLEXED WITH NON-HYDROLYSABLE SUBSTRATE ANALOGUE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-thio-beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose-(1-4)-1,4-dithio-beta-D-glucopyranose, ENDOGLUCANASE I
著者Sulzenbacher, G, Davies, G.J, Schulein, M.
登録日1996-10-17
公開日1997-10-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the Fusarium oxysporum endoglucanase I with a nonhydrolyzable substrate analogue: substrate distortion gives rise to the preferred axial orientation for the leaving group.
Biochemistry, 35, 1996
3OVW
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ENDOGLUCANASE I NATIVE STRUCTURE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ENDOGLUCANASE I
著者Davies, G.J, Schulein, M.
登録日1997-10-06
公開日1998-04-08
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the endoglucanase I from Fusarium oxysporum: native, cellobiose, and 3,4-epoxybutyl beta-D-cellobioside-inhibited forms, at 2.3 A resolution.
Biochemistry, 36, 1997
3M89
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Structure of TubZ-GTP-g-S
分子名称: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, FtsZ/tubulin-related protein
著者Ni, L, Xu, W, Schumacher, M.A.
登録日2010-03-17
公開日2010-07-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献From the Cover: Plasmid protein TubR uses a distinct mode of HTH-DNA binding and recruits the prokaryotic tubulin homolog TubZ to effect DNA partition.
Proc.Natl.Acad.Sci.USA, 107, 2010
2PUG
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CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES
分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), HYPOXANTHINE, PROTEIN (PURINE REPRESSOR)
著者Lu, F, Schumacher, M.A, Arvidson, D.N, Haldimann, A, Wanner, B.L, Zalkin, H, Brennan, R.G.
登録日1997-10-04
公開日1998-05-06
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure-based redesign of corepressor specificity of the Escherichia coli purine repressor by substitution of residue 190.
Biochemistry, 37, 1998
2PUF
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BU of 2puf by Molmil
CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES
分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), GUANINE, PROTEIN (PURINE REPRESSOR)
著者Lu, F, Schumacher, M.A, Arvidson, D.N, Haldimann, A, Wanner, B.L, Zalkin, H, Brennan, R.G.
登録日1997-10-04
公開日1998-05-06
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure-based redesign of corepressor specificity of the Escherichia coli purine repressor by substitution of residue 190.
Biochemistry, 37, 1998
1BDH
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PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), HYPOXANTHINE, PROTEIN (PURINE REPRESSOR)
著者Glasfeld, A, Schumacher, M.A, Choi, K.Y, Zalkin, H, Brennan, R.G.
登録日1996-07-25
公開日1997-04-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献A Positively Charged Residue Bound in the Minor Groove Does not Alter the Bending of a DNA Duplex
J.Am.Chem.Soc., 118, 1996
1QH6
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CATALYSIS AND SPECIFICITY IN ENZYMATIC GLYCOSIDE HYDROLASES: A 2,5B CONFORMATION FOR THE GLYCOSYL-ENZYME INTERMIDIATE REVEALED BY THE STRUCTURE OF THE BACILLUS AGARADHAERENS FAMILY 11 XYLANASE
分子名称: XYLANASE, beta-D-xylopyranose-(1-4)-2-deoxy-2-fluoro-alpha-D-xylopyranose
著者Sabini, E, Sulzenbacher, G, Dauter, M, Dauter, Z, Jorgensen, P.L, Schulein, M, Dupont, C, Davies, G.J, Wilson, K.S.
登録日1999-05-11
公開日2000-05-17
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Catalysis and specificity in enzymatic glycoside hydrolysis: a 2,5B conformation for the glycosyl-enzyme intermediate revealed by the structure of the Bacillus agaradhaerens family 11 xylanase.
Chem.Biol., 6, 1999

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件を2024-07-03に公開中

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