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PDB: 634 件

6BOK
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E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Korostelev, A.A.
登録日2017-11-20
公開日2018-05-23
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (3.55 Å)
主引用文献Conformational Control of Translation Termination on the 70S Ribosome.
Structure, 26, 2018
5E23
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BU of 5e23 by Molmil
Human transthyretin (TTR) complexed with (2,7-Dibromo-fluoren-9-ylideneaminooxy)-acetic acid
分子名称: DIMETHYL SULFOXIDE, Transthyretin, {[(2,7-dibromo-9H-fluoren-9-ylidene)amino]oxy}acetic acid
著者Ciccone, L, Nencetti, S, Rossello, A, Orlandini, E, Stura, E.A.
登録日2015-09-30
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Synthesis and structural analysis of halogen substituted fibril formation inhibitors of Human Transthyretin (TTR).
J Enzyme Inhib Med Chem, 31, 2016
3RGB
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BU of 3rgb by Molmil
Crystal structure of particulate methane monooxygenase from Methylococcus capsulatus (Bath)
分子名称: COPPER (II) ION, DINUCLEAR COPPER ION, Methane monooxygenase subunit A2, ...
著者Smith, S.M, Rosenzweig, A.C.
登録日2011-04-08
公開日2011-11-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure and Characterization of Particulate Methane Monooxygenase from Methylocystis species Strain M.
Biochemistry, 50, 2011
4QKO
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The Crystal Structure of the Pyocin S2 Nuclease Domain, Immunity Protein Complex at 1.8 Angstroms
分子名称: BROMIDE ION, MAGNESIUM ION, Pyocin-S2, ...
著者Grinter, R, Josts, I, Roszak, A.W, Cogdell, C.J, Walker, D.
登録日2014-06-07
公開日2015-06-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Insights into pyocin S2
To be Published
5T7L
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BU of 5t7l by Molmil
Pt(II)-mediated copper-dependent interactions between ATOX1 and MNK1
分子名称: COPPER (II) ION, Copper transport protein ATOX1, Copper-transporting ATPase 1, ...
著者Caliandro, R, Mirabelli, V, Caliandro, R, Rosato, A, Lasorsa, A, Galliani, A, Arnesano, F, Natile, G.
登録日2016-09-05
公開日2016-10-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.83 Å)
主引用文献Mechanistic and Structural Basis for Inhibition of Copper Trafficking by Platinum Anticancer Drugs.
J.Am.Chem.Soc., 141, 2019
6OGI
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BU of 6ogi by Molmil
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A.
登録日2019-04-02
公開日2019-09-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Extensive ribosome and RF2 rearrangements during translation termination.
Elife, 8, 2019
5U0J
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BU of 5u0j by Molmil
C-terminal ankyrin repeats from human kidney-type glutaminase (KGA) - monoclinic crystal form
分子名称: Glutaminase kidney isoform, mitochondrial, SODIUM ION
著者Pasquali, C.C, Gonzalez, A, Dias, S.M.G, Ambrosio, A.L.B.
登録日2016-11-24
公開日2017-05-24
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献The origin and evolution of human glutaminases and their atypical C-terminal ankyrin repeats.
J. Biol. Chem., 292, 2017
6BU8
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BU of 6bu8 by Molmil
70S ribosome with S1 domains 1 and 2 (Class 1)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ...
著者Loveland, A.B, Korostelev, A.A.
登録日2017-12-08
公開日2018-01-31
最終更新日2020-01-01
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural dynamics of protein S1 on the 70S ribosome visualized by ensemble cryo-EM.
Methods, 137, 2018
6BOH
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Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Korostelev, A.A.
登録日2017-11-20
公開日2018-05-23
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Conformational Control of Translation Termination on the 70S Ribosome.
Structure, 26, 2018
1PJ0
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BU of 1pj0 by Molmil
RIBONUCLEOTIDE REDUCTASE R2-D84E/W48F MUTANT SOAKED WITH FERROUS IONS AT NEUTRAL PH
分子名称: FE (III) ION, MERCURY (II) ION, Ribonucleoside-diphosphate reductase 1 beta chain
著者Voegtli, W.C, Sommerhalter, M, Saleh, L, Baldwin, J, Bollinger Jr, J.M, Rosenzweig, A.C.
登録日2003-05-30
公開日2004-01-13
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Variable coordination geometries at the diiron(II) active site of ribonucleotide reductase R2.
J.Am.Chem.Soc., 125, 2003
1DO9
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BU of 1do9 by Molmil
SOLUTION STRUCTURE OF OXIDIZED MICROSOMAL RABBIT CYTOCHROME B5. FACTORS DETERMINING THE HETEROGENEOUS BINDING OF THE HEME.
分子名称: CYTOCHROME B5, PROTOPORPHYRIN IX CONTAINING FE
著者Banci, L, Bertini, I, Rosato, A, Scacchieri, S.
登録日1999-12-20
公開日2000-01-05
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of oxidized microsomal rabbit cytochrome b5. Factors determining the heterogeneous binding of the heme.
Eur.J.Biochem., 267, 2000
6OGF
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BU of 6ogf by Molmil
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A.
登録日2019-04-02
公開日2019-09-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Extensive ribosome and RF2 rearrangements during translation termination.
Elife, 8, 2019
5LOF
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BU of 5lof by Molmil
Crystal structure of the MBP-MCL1 complex with highly selective and potent inhibitor of MCL1
分子名称: (2~{R})-2-[5-[3-chloranyl-2-methyl-4-[2-(4-methylpiperazin-1-yl)ethoxy]phenyl]-6-(5-fluoranylfuran-2-yl)thieno[2,3-d]pyrimidin-4-yl]oxy-3-[2-[[2-[2,2,2-tris(fluoranyl)ethyl]pyrazol-3-yl]methoxy]phenyl]propanoic acid, Maltose-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Dokurno, P, Kotschy, A, Szlavik, Z, Murray, J, Davidson, J, Csekei, M, Paczal, A, Szabo, Z, Sipos, S, Radics, G, Proszenyak, A, Balint, B, Ondi, L, Blasko, G, Robertson, A, Surgenor, A, Chen, I, Matassova, N, Smith, J, Pedder, C, Graham, C, Geneste, O.
登録日2016-08-09
公開日2016-10-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The MCL1 inhibitor S63845 is tolerable and effective in diverse cancer models.
Nature, 538, 2016
5IO9
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BU of 5io9 by Molmil
X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN
分子名称: Neuronal migration protein doublecortin
著者Ruf, A, Benz, J, Burger, D, D'Arcy, B, Debulpaep, M, Di Lello, P, Fry, D, Huber, W, Kremer, T, Laeremans, T, Matile, H, Ross, A, Rudolph, M.G, Rufer, A.C, Sharma, A, Steinmetz, M.O, Steyaert, J, Schoch, G, Stihle, M, Thoma, R.
登録日2016-03-08
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal Structures of the Human Doublecortin C- and N-terminal Domains in Complex with Specific Antibodies.
J.Biol.Chem., 291, 2016
4Z3S
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BU of 4z3s by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 3'-deoxy-3'-{[(2E)-3-(4-{[(4Z)-6-O-(6-deoxy-3,4-di-O-methyl-alpha-D-mannopyranosyl)-5-O-methyl-alpha-D-threo-hex-4-enofuranosyl]oxy}phenyl)-2-methylprop-2-enoyl]amino}-N,N-dimethyladenosine, ...
著者Polikanov, Y.S, Starosta, A.L, Juette, M.F, Altman, R.B, Terry, D.S, Lu, W, Burnett, B.J, Dinos, G, Reynolds, K, Blanchard, S.C, Steitz, T.A, Wilson, D.N.
登録日2015-03-31
公開日2015-06-03
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Distinct tRNA Accommodation Intermediates Observed on the Ribosome with the Antibiotics Hygromycin A and A201A.
Mol.Cell, 58, 2015
1MC1
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BU of 1mc1 by Molmil
BETA-LACTAM SYNTHETASE WITH PRODUCT (DGPC), AMP AND PPI
分子名称: ADENOSINE MONOPHOSPHATE, BETA-LACTAM SYNTHETASE, DEOXYGUANIDINOPROCLAVAMINIC ACID, ...
著者Miller, M.T, Bachmann, B.O, Townsend, C.A, Rosenzweig, A.C.
登録日2002-08-04
公開日2002-10-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献The catalytic cycle of beta -lactam synthetase observed by x-ray crystallographic snapshots
Proc.Natl.Acad.Sci.USA, 99, 2002
5IP4
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X-RAY STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN
分子名称: Neuronal migration protein doublecortin, XA4551 NANOBODY AGAINST C-DCX
著者Ruf, A, Benz, J, Burger, D, D'Arcy, B, Debulpaep, M, Di Lello, P, Fry, D, Huber, W, Kremer, T, Laeremans, T, Matile, H, Ross, A, Rudolph, M.G, Rufer, A.C, Sharma, A, Steinmetz, M.O, Steyaert, J, Schoch, G, Stihle, M, Thoma, R.
登録日2016-03-09
公開日2016-05-18
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Crystal Structures of the Human Doublecortin C- and N-terminal Domains in Complex with Specific Antibodies.
J.Biol.Chem., 291, 2016
1MB9
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BETA-LACTAM SYNTHETASE COMPLEXED WITH ATP
分子名称: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, BETA-LACTAM SYNTHETASE, ...
著者Miller, M.T, Bachmann, B.O, Townsend, C.A, Rosenzweig, A.C.
登録日2002-08-02
公開日2002-10-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献The catalytic cycle of beta -lactam synthetase observed by x-ray crystallographic snapshots
Proc.Natl.Acad.Sci.USA, 99, 2002
2BOB
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Potassium channel KcsA-Fab complex in thallium with tetrabutylammonium (TBA)
分子名称: ANTIBODY FAB FRAGMENT HEAVY CHAIN, ANTIBODY FAB FRAGMENT LIGHT CHAIN, COBALT (II) ION, ...
著者Lenaeus, M.J, Vamvouka, M, Focia, P.J, Gross, A.
登録日2005-04-09
公開日2005-04-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.76 Å)
主引用文献Structural Basis of Tea Blockade in a Model Potassium Channel
Nat.Struct.Mol.Biol., 12, 2005
6OGG
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BU of 6ogg by Molmil
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A.
登録日2019-04-02
公開日2019-09-25
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Extensive ribosome and RF2 rearrangements during translation termination.
Elife, 8, 2019
5J4D
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BU of 5j4d by Molmil
E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
分子名称: 16S ribosomal RNA, 25S ribosomal RNA, 30S ribosomal protein S10, ...
著者Svidritskiy, E, Korostelev, A.A.
登録日2016-03-31
公開日2016-05-18
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.
J.Mol.Biol., 428, 2016
1PJ1
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RIBONUCLEOTIDE REDUCTASE R2-D84E/W48F SOAKED WITH FERROUS IONS AT PH 5
分子名称: FE (III) ION, MERCURY (II) ION, Ribonucleoside-diphosphate reductase 1 beta chain
著者Voegtli, W.C, Sommerhalter, M, Saleh, L, Baldwin, J, Bollinger Jr, J.M, Rosenzweig, A.C.
登録日2003-05-30
公開日2004-01-13
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Variable coordination geometries at the diiron(II) active site of ribonucleotide reductase R2.
J.Am.Chem.Soc., 125, 2003
1PIZ
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RIBONUCLEOTIDE REDUCTASE R2 D84E MUTANT SOAKED WITH FERROUS IONS AT NEUTRAL PH
分子名称: FE (III) ION, MERCURY (II) ION, Ribonucleoside-diphosphate reductase 1 beta chain
著者Voegtli, W.C, Sommerhalter, M, Saleh, L, Baldwin, J, Bollinger Jr, J.M, Rosenzweig, A.C.
登録日2003-05-30
公開日2004-01-13
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Variable coordination geometries at the diiron(II) active site of ribonucleotide reductase R2.
J.Am.Chem.Soc., 125, 2003
1PIU
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OXIDIZED RIBONUCLEOTIDE REDUCTASE R2-D84E MUTANT CONTAINING OXO-BRIDGED DIFERRIC CLUSTER
分子名称: FE (III) ION, MERCURY (II) ION, OXYGEN ATOM, ...
著者Voegtli, W.C, Khidekel, N, Baldwin, J, Ley, B.A, Bollinger Jr, J.M, Rosenzweig, A.C.
登録日2003-05-30
公開日2003-06-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of the Ribonucleotide Reductase R2 Mutant that Accumulates a u-1,2-Peroxodiiron(III) Intermediate during Oxygen Activation
J.Am.Chem.Soc., 122, 2000
5JUU
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Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 5.8S ribosomal RNA, ...
著者Abeyrathne, P, Koh, C.S, Grant, T, Grigorieff, N, Korostelev, A.A.
登録日2016-05-10
公開日2016-10-05
最終更新日2019-11-27
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome.
Elife, 5, 2016

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