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PDB: 906 results

6DN2
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BU of 6dn2 by Molmil
CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA
Descriptor: 4-{benzyl[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]amino}butanoic acid, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6DN3
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BU of 6dn3 by Molmil
CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA
Descriptor: 7,8-dimethyl-2,4-dioxo-10-(3-phenylpropyl)-1,2,3,4-tetrahydrobenzo[g]pteridin-10-ium, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
6DKQ
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BU of 6dkq by Molmil
Crystal structure of the Shr Hemoglobin Interacting Domain 2
Descriptor: Heme-binding protein Shr, SULFATE ION
Authors:Macdonald, R, Cascio, D, Collazo, M.J, Clubb, R.T.
Deposit date:2018-05-30
Release date:2018-10-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Streptococcus pyogenes Shr protein captures human hemoglobin using two structurally unique binding domains.
J.Biol.Chem., 293, 2018
6DN1
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BU of 6dn1 by Molmil
CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA
Descriptor: 10-(6-carboxyhexyl)-8-(cyclopentylamino)-2,4-dihydroxy-7-methylbenzo[g]pteridin-10-ium, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Vicens, Q, Mondragon, E, Reyes, F.E, Berman, J, Kaur, H, Kells, K, Wickens, P, Wilson, J, Gadwood, R, Schostarez, H, Suto, R.K, Coish, P, Blount, K.F, Batey, R.T.
Deposit date:2018-06-05
Release date:2018-09-05
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.
ACS Chem. Biol., 13, 2018
3GX2
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BU of 3gx2 by Molmil
TteSAM-I riboswitch variant A94GU34C bound to sinefungin
Descriptor: MAGNESIUM ION, RNA (94-MER), SINEFUNGIN
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-04-01
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.
J.Mol.Biol., 396, 2010
3GX6
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BU of 3gx6 by Molmil
Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride
Descriptor: MANGANESE (II) ION, RNA (94-MER), S-ADENOSYLMETHIONINE
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-04-01
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.
J.Mol.Biol., 396, 2010
4M7I
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BU of 4m7i by Molmil
Crystal Structure of GSK6157 Bound to PERK (R587-R1092, delete A660-T867) at 2.34A Resolution
Descriptor: 1-[5-(4-amino-7-methyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)-4-fluoro-1H-indol-1-yl]-2-(6-methylpyridin-2-yl)ethanone, Eukaryotic translation initiation factor 2-alpha kinase 3
Authors:Gampe, R.T, Axten, J.M.
Deposit date:2013-08-12
Release date:2014-09-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Discovery of 5-{4-fluoro-1-[(6-methyl-2-pyridinyl)acetyl]-2,3-dihydro-1H-indol-5-yl}-7-methyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine (GSK2656157), a Potent and Selective PERK Inhibitor Selected for Preclinical Development
To be Published
3GOG
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BU of 3gog by Molmil
Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine
Descriptor: 6-chloroguanine, ACETATE ION, COBALT HEXAMMINE(III), ...
Authors:Gilbert, S.D, Batey, R.T.
Deposit date:2009-03-19
Release date:2009-06-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs
Structure, 17, 2009
3GX7
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BU of 3gx7 by Molmil
Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM
Descriptor: MAGNESIUM ION, RNA (94-MER), S-ADENOSYLMETHIONINE
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-04-01
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.
J.Mol.Biol., 396, 2010
3GX3
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BU of 3gx3 by Molmil
Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (94-MER), ...
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-04-01
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.
J.Mol.Biol., 396, 2010
3HTE
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BU of 3hte by Molmil
Crystal structure of nucleotide-free hexameric ClpX
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, SULFATE ION
Authors:Glynn, S.E, Martin, A, Baker, T.A, Sauer, R.T.
Deposit date:2009-06-11
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4.026 Å)
Cite:Structures of asymmetric ClpX hexamers reveal nucleotide-dependent motions in a AAA+ protein-unfolding machine.
Cell(Cambridge,Mass.), 139, 2009
3HWS
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BU of 3hws by Molmil
Crystal structure of nucleotide-bound hexameric ClpX
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit clpX, MAGNESIUM ION, ...
Authors:Glynn, S.E, Martin, A, Baker, T.A, Sauer, R.T.
Deposit date:2009-06-18
Release date:2009-11-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structures of asymmetric ClpX hexamers reveal nucleotide-dependent motions in a AAA+ protein-unfolding machine.
Cell(Cambridge,Mass.), 139, 2009
4MYP
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BU of 4myp by Molmil
Structure of the central NEAT domain, N2, of the listerial Hbp2 protein complexed with heme
Descriptor: GLYCEROL, Iron-regulated surface determinant protein A, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Malmirchegini, G.R, Sawaya, M.R, Clubb, R.T.
Deposit date:2013-09-27
Release date:2014-10-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Novel Mechanism of Hemin Capture by Hbp2, the Hemoglobin-binding Hemophore from Listeria monocytogenes.
J.Biol.Chem., 289, 2014
3IQR
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BU of 3iqr by Molmil
SAM-I riboswitch from T. tencongensis variant A94G bound with SAM
Descriptor: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I riboswitch
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-08-20
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Free state conformational sampling of the SAM-I riboswitch aptamer domain.
Structure, 18, 2010
3IQN
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BU of 3iqn by Molmil
Free-state structural transitions of the SAM-I riboswitch
Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-08-20
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Free state conformational sampling of the SAM-I riboswitch aptamer domain.
Structure, 18, 2010
8DOV
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BU of 8dov by Molmil
Crystal structure of the Shr Hemoglobin Interacting Domain 2 (HID2) in complex with Hemoglobin
Descriptor: GLYCEROL, Heme-binding protein Shr, Hemoglobin subunit alpha, ...
Authors:Macdonald, R, Mahoney, B.J, Cascio, D, Clubb, R.T.
Deposit date:2022-07-14
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Shr receptor from Streptococcus pyogenes uses a cap and release mechanism to acquire heme-iron from human hemoglobin.
Proc.Natl.Acad.Sci.USA, 120, 2023
3IQP
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BU of 3iqp by Molmil
SAM-I riboswitch from T. tencongensis variant A94G apo form
Descriptor: BARIUM ION, SAM-I riboswitch
Authors:Montange, R.K, Batey, R.T.
Deposit date:2009-08-20
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Free state conformational sampling of the SAM-I riboswitch aptamer domain.
Structure, 18, 2010
4N2P
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BU of 4n2p by Molmil
Structure of Archease from Pyrococcus horikoshii
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T.
Deposit date:2013-10-05
Release date:2014-01-01
Last modified:2020-09-23
Method:X-RAY DIFFRACTION (1.435 Å)
Cite:A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation.
Nucleic Acids Res., 42, 2014
3IPN
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BU of 3ipn by Molmil
Crystal Structure of fluorine and methyl modified collagen: (mepFlpgly)7
Descriptor: CARBONATE ION, Non-natural Collagen
Authors:Satyshur, K.A, Shoulders, M.D, Raines, R.T, Forest, K.T.
Deposit date:2009-08-18
Release date:2010-02-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Stereoelectronic and steric effects in side chains preorganize a protein main chain.
Proc.Natl.Acad.Sci.USA, 107, 2010
4NEU
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BU of 4neu by Molmil
X-ray structure of Receptor Interacting Protein 1 (RIP1)kinase domain with a 1-aminoisoquinoline inhibitor
Descriptor: 1-[4-(1-aminoisoquinolin-5-yl)phenyl]-3-(5-tert-butyl-1,2-oxazol-3-yl)urea, MAGNESIUM ION, Receptor-interacting serine/threonine-protein kinase 1
Authors:Nolte, R.T, Ward, P, kahler, K.M, Campobasso, N.
Deposit date:2013-10-30
Release date:2013-11-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Discovery of Small Molecule RIP1 Kinase Inhibitors for the Treatment of Pathologies Associated with Necroptosis.
ACS Med Chem Lett, 4, 2013
4NLA
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BU of 4nla by Molmil
Structure of the central NEAT domain, N2, of the listerial Hbp2 protein, apo form
Descriptor: Iron-regulated surface determinant protein A, SULFATE ION
Authors:Malmirchegini, G.R, Sawaya, M.R, Clubb, R.T.
Deposit date:2013-11-14
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Novel Mechanism of Hemin Capture by Hbp2, the Hemoglobin-binding Hemophore from Listeria monocytogenes.
J.Biol.Chem., 289, 2014
8EET
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BU of 8eet by Molmil
T=1 particle HIV-1 CA M66A
Descriptor: Gag polyprotein, INOSITOL HEXAKISPHOSPHATE
Authors:Pornillos, O, Ganser-Pornillos, B.K, Schirra, R.T.
Deposit date:2022-09-07
Release date:2023-02-15
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A molecular switch modulates assembly and host factor binding of the HIV-1 capsid.
Nat.Struct.Mol.Biol., 30, 2023
8EJL
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BU of 8ejl by Molmil
Structure of HIV-1 capsid declination in complex with CPSF6-FG peptide
Descriptor: Cleavage and polyadenylation specificity factor subunit 6, HIV-1 capsid protein
Authors:Pornillos, O, Ganser-Pornillos, B.K, Schirra, R.T, dos Santos, N.F.B.
Deposit date:2022-09-17
Release date:2023-02-15
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:A molecular switch modulates assembly and host factor binding of the HIV-1 capsid.
Nat.Struct.Mol.Biol., 30, 2023
8EEP
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BU of 8eep by Molmil
T=1 particle HIV-1 CA G60A/G61P
Descriptor: Gag polyprotein, INOSITOL HEXAKISPHOSPHATE
Authors:Pornillos, O, Ganser-Pornillos, B.K, Schirra, R.T.
Deposit date:2022-09-07
Release date:2023-02-15
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:A molecular switch modulates assembly and host factor binding of the HIV-1 capsid.
Nat.Struct.Mol.Biol., 30, 2023
3K10
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BU of 3k10 by Molmil
Crystal structure of telomere capping protein Stn1 from Saccharomyces cerevisiae
Descriptor: Protein STN1
Authors:Gelinas, A.D, Reyes, F.E, Batey, R.T, Wuttke, D.S.
Deposit date:2009-09-25
Release date:2009-10-27
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Telomere capping proteins are structurally related to RPA with an additional telomere-specific domain.
Proc.Natl.Acad.Sci.USA, 106, 2009

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