3LQX

SRP ribonucleoprotein core complexed with cobalt hexammine

Summary for 3LQX

• Entry DOI: 10.2210/pdb3lqx/pdb
• Descriptor: Signal recognition particle protein, SRP RNA, POTASSIUM ION, ... (6 entities in total)
• Functional Keywords: rna-protein complex, signal recognition particle, gtp-binding, nucleotide-binding, ribonucleoprotein, rna-binding, rna-rna binding protein complex, rna/rna binding protein
• Biological source: Escherichia coli
• Cellular location: Cytoplasm: P0AGD7
• Total number of polymer chains: 2
• Total formula weight: 30032.02

Authors

Batey, R.T. (deposition date: 2010-02-10, release date: 2010-03-02, Last modification date: 2024-11-20)

Primary citation

Batey, R.T.,Doudna, J.A.
Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly
Biochemistry, 41:11703-11710, 2002

PubMed Abstract: The signal recognition particle (SRP) targets proteins to the endoplasmic reticulum in eukaryotes or to the inner membrane in prokaryotes by binding to hydrophobic signal sequences. Signal peptide recognition occurs within the highly conserved RNA-protein core of the SRP, underscoring the importance of this complex in SRP function. Structural analysis of the RNA and protein components of the prokaryotic SRP in the free and bound states revealed that the RNA undergoes a significant conformational change upon protein binding involving the uptake of several monovalent and divalent cations. To investigate the role of these metal ions in formation of the functional SRP complex, we used binding affinity assays and X-ray crystallography to analyze the specificity and energetic contributions of mono- and divalent metal ions bound in the RNA. Our results demonstrate that several metal ion binding sites important for RNA conformation can accommodate chemically distinct ions, often without affecting the structure of the complex. Thus, while these metal ions are highly ordered and essential for the formation and stability of the SRP complex, they behave like nonspecific metal ions.

PubMed: 12269812

Experimental method

X-RAY DIFFRACTION (1.93 Å)