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PDB: 2930 results

7ROX
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BU of 7rox by Molmil
BthTX-I complexed with inhibitor MMV
Descriptor: 12-methoxy-Nb-methylvoachalotine, Basic phospholipase A2 homolog bothropstoxin-I
Authors:Borges, R.J, De Marino, I, Uson, I, Fontes, M.R.M.
Deposit date:2021-08-02
Release date:2022-11-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional studies of a snake venom phospholipase A 2 -like protein complexed to an inhibitor from Tabernaemontana catharinensis.
Biochimie, 206, 2023
6QQ5
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Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) from Alcaligenes xylosoxidans
Descriptor: CALCIUM ION, FE (III) ION, Nitric oxide reductase subunit B, ...
Authors:Gopalasingam, C.C, Johnson, R.M, Chiduza, G.N, Tosha, T, Yamamoto, M, Shiro, Y, Antonyuk, S.V, Muench, S.P, Hasnain, S.S.
Deposit date:2019-02-17
Release date:2019-09-11
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy.
Sci Adv, 5, 2019
6QU6
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BU of 6qu6 by Molmil
Adenovirus Serotype 26 (Ad26) in complex with sialic acid, pH4.0
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Fiber, ...
Authors:Baker, A.T, Mundy, R.M, Parker, A.L, Rizkallah, P.J.
Deposit date:2019-02-26
Release date:2019-09-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Human adenovirus type 26 uses sialic acid-bearing glycans as a primary cell entry receptor.
Sci Adv, 5, 2019
6I0O
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BU of 6i0o by Molmil
Structure of human IMP dehydrogenase, isoform 2, bound to GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, Inosine-5'-monophosphate dehydrogenase 2, SULFATE ION
Authors:Buey, R.M, Fernandez-Justel, D, Revuelta, J.L.
Deposit date:2018-10-26
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.623 Å)
Cite:A Nucleotide-Dependent Conformational Switch Controls the Polymerization of Human IMP Dehydrogenases to Modulate their Catalytic Activity.
J. Mol. Biol., 431, 2019
6QQ6
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BU of 6qq6 by Molmil
Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) Val495Ala mutant from Alcaligenes xylosoxidans
Descriptor: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Gopalasingam, C.C, Johnson, R.M, Chiduza, G.N, Tosha, T, Yamamoto, M, Shiro, Y, Antonyuk, S.V, Muench, S.P, Hasnain, S.S.
Deposit date:2019-02-17
Release date:2019-09-11
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy.
Sci Adv, 5, 2019
8CLM
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BU of 8clm by Molmil
1.80 A crystal structure of RNA/2'-O-methyl-RNA heteroduplex
Descriptor: POTASSIUM ION, RNA (5'-R(*(UZL)*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC)P*)-3'), RNA (5'-R(*G*UP*CP*UP*CP*CP*UP*AP*GP*)-3'), ...
Authors:Dolot, R.M, Maciaszek, A, Nawrot, B.C.
Deposit date:2023-02-16
Release date:2023-03-01
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of RNA/2'-O-methyl-RNA heteroduplex
To Be Published
8CKS
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BU of 8cks by Molmil
Crystal structure of Human Serum Albumin in complex with FESAN
Descriptor: 3,3'-commo-bis(1,2-dicarba-3-ferra-closo-dodecaborane), DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Dolot, R.M, Kaniowski, D, Ebenryter-Olbinska, K, Szczupak, P, Suwara, J, Nawrot, B.C.
Deposit date:2023-02-16
Release date:2023-03-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Human Serum Albumin in complex with FESAN
To Be Published
8CNX
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BU of 8cnx by Molmil
Structure of Enterovirus D68 3C protease
Descriptor: Protease 3C
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-02-24
Release date:2023-04-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of EV D68 3C protease
To Be Published
8CNY
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BU of 8cny by Molmil
Structure of Enterovirus A71 3C protease
Descriptor: Protease 3C
Authors:Lithgo, R.M, Fairhead, M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Godoy, A.S, Marples, P.G, Ni, X, Tomlinson, C.W.E, Wild, C, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-02-24
Release date:2023-04-05
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structure of EV D68 3C protease - to be published
To Be Published
5OJE
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BU of 5oje by Molmil
Endothiapepsin with Ligand VSK-B24
Descriptor: (2~{S})-2-azanyl-3-(1~{H}-indol-3-yl)-~{N}-[2-(2,4,6-trimethylphenyl)ethyl]propanamide, DIMETHYL SULFOXIDE, Endothiapepsin, ...
Authors:Gierse, R.M, Magari, F, Groves, M.R, Heine, A, Klebe, G, Hirsch, A.
Deposit date:2017-07-21
Release date:2018-09-12
Last modified:2018-11-21
Method:X-RAY DIFFRACTION (1.579 Å)
Cite:Design and Synthesis of Bioisosteres of Acylhydrazones as Stable Inhibitors of the Aspartic Protease Endothiapepsin.
ChemMedChem, 13, 2018
7CQ2
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BU of 7cq2 by Molmil
Crystal structure of Slx1-Slx4
Descriptor: GLYCEROL, SLX4 isoform 1, Structure-specific endonuclease subunit SLX1, ...
Authors:Xu, X, Wang, M, Sun, J, Li, G, Yang, N, Xu, R.M.
Deposit date:2020-08-08
Release date:2021-06-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure specific DNA recognition by the SLX1-SLX4 endonuclease complex.
Nucleic Acids Res., 49, 2021
5OQE
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BU of 5oqe by Molmil
XFEL structure of the on state of a reversibly photoswitching fluorescent protein determined using the droplet injection method
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J.
Deposit date:2017-08-11
Release date:2017-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
Int J Mol Sci, 18, 2017
6HPF
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BU of 6hpf by Molmil
Structure of Inactive E165Q mutant of fungal non-CBM carrying GH26 endo-b-mannanase from Yunnania penicillata in complex with alpha-62-61-di-galactosyl-mannotriose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, CHLORIDE ION, ...
Authors:von Freiesleben, P, Moroz, O.V, Blagova, E, Wiemann, M, Spodsberg, N, Agger, J.W, Davies, G.J, Wilson, K.S, Stalbrand, H, Meyer, A.S, Krogh, K.B.R.M.
Deposit date:2018-09-20
Release date:2019-03-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure and substrate interactions of an unusual fungal non-CBM carrying GH26 endo-beta-mannanase from Yunnania penicillata.
Sci Rep, 9, 2019
5OO3
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BU of 5oo3 by Molmil
Cdk2(F80C, C177A) with covalent ligand at F80C
Descriptor: 1-(4-ethyl-2,3-dihydroquinoxalin-1-yl)propan-1-one, Cyclin-dependent kinase 2
Authors:Craven, G, Morgan, R.M.L, Mann, D.J.
Deposit date:2017-08-05
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:High-throughput kinetic analysis for target-directed covalent ligand discovery
To Be Published
7CQ3
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BU of 7cq3 by Molmil
Crystal structure of Slx1-Slx4
Descriptor: SLX4 isoform 1, SULFATE ION, Structure-specific endonuclease subunit SLX1, ...
Authors:Xu, X, Wang, M, Sun, J, Li, G, Yang, N, Xu, R.M.
Deposit date:2020-08-08
Release date:2021-06-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:Structure specific DNA recognition by the SLX1-SLX4 endonuclease complex.
Nucleic Acids Res., 49, 2021
7CQ4
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BU of 7cq4 by Molmil
Crystal structure of Slx1-Slx4 in complex with 5'flap DNA
Descriptor: DNA (27-MER), DNA (5'-D(*AP*GP*GP*AP*CP*AP*TP*CP*TP*TP*TP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*TP*AP*CP*AP*AP*CP*AP*GP*AP*T)-3'), ...
Authors:Xu, X, Wang, M, Sun, J, Li, G, Yang, N, Xu, R.M.
Deposit date:2020-08-08
Release date:2021-06-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.294 Å)
Cite:Structure specific DNA recognition by the SLX1-SLX4 endonuclease complex.
Nucleic Acids Res., 49, 2021
5OOZ
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BU of 5ooz by Molmil
XFEL structure of the on state of a reversibly photoswitching fluorescent protein determined using the grease injection method
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
Int J Mol Sci, 18, 2017
5OQ9
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BU of 5oq9 by Molmil
XFEL structure of the off state of a reversibly photoswitching fluorescent protein determined using the droplet on demand injection method
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J.
Deposit date:2017-08-11
Release date:2017-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
Int J Mol Sci, 18, 2017
5OSM
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BU of 5osm by Molmil
Cdk2(F80C, C177A) with covalent adduct at C80
Descriptor: Cyclin-dependent kinase 2, methyl 1-propanoyl-3,4-dihydro-2~{H}-quinoline-6-carboxylate
Authors:Craven, G, Morgan, R.M.L, Mann, D.J.
Deposit date:2017-08-17
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:High-Throughput Kinetic Analysis for Target-Directed Covalent Ligand Discovery.
Angew. Chem. Int. Ed. Engl., 57, 2018
6I3V
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BU of 6i3v by Molmil
x-ray structure of the human mitochondrial PRELID1 in complex with TRIAP1
Descriptor: CHLORIDE ION, MYRISTIC ACID, PRELI domain-containing protein 1, ...
Authors:Berry, J.L, Miliara, X, Morgan, R.M.L, Matthews, S.J.
Deposit date:2018-11-07
Release date:2019-03-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural determinants of lipid specificity within Ups/PRELI lipid transfer proteins.
Nat Commun, 10, 2019
6I7S
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BU of 6i7s by Molmil
Microsomal triglyceride transfer protein
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, ...
Authors:Biterova, E, Isupov, M.N, Keegan, R.M, Lebedev, A.A, Ruddock, L.W.
Deposit date:2018-11-17
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of human microsomal triglyceride transfer protein.
Proc.Natl.Acad.Sci.USA, 116, 2019
6XXG
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BU of 6xxg by Molmil
Structure of truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Deinococcus radiodurans
Descriptor: 1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase, CALCIUM ION, MAGNESIUM ION, ...
Authors:Gierse, R.M, Reddem, E, Grooves, M.R.
Deposit date:2020-01-27
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Identification of a 1-deoxy-D-xylulose-5-phosphate synthase (DXS) mutant with improved crystallographic properties.
Biochem.Biophys.Res.Commun., 539, 2021
4PW6
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BU of 4pw6 by Molmil
structure of UHRF2-SRA in complex with a 5hmC-containing DNA, complex II
Descriptor: 5hmC-containing DNA1, 5hmC-containing DNA2, E3 ubiquitin-protein ligase UHRF2
Authors:Zhou, T, Xiong, J, Wang, M, Yang, N, Wong, J, Zhu, B, Xu, R.M.
Deposit date:2014-03-18
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.789 Å)
Cite:Structural Basis for Hydroxymethylcytosine Recognition by the SRA Domain of UHRF2.
Mol.Cell, 54, 2014
2YET
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BU of 2yet by Molmil
Thermoascus GH61 isozyme A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYL GROUP, COPPER (II) ION, ...
Authors:Otten, H, Quinlan, R.J, Sweeney, M.D, Poulsen, J.-C.N, Johansen, K.S, Krogh, K.B.R.M, Joergensen, C.I, Tovborg, M, Anthonsen, A, Tryfona, T, Walter, C.P, Dupree, P, Xu, F, Davies, G.J, Walton, P.H, Lo Leggio, L.
Deposit date:2011-03-30
Release date:2011-09-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Insights Into the Oxidative Degradation of Cellulose by a Copper Metalloenzyme that Exploits Biomass Components.
Proc.Natl.Acad.Sci.USA, 108, 2011
4PW5
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BU of 4pw5 by Molmil
structure of UHRF2-SRA in complex with a 5hmC-containing DNA, complex I
Descriptor: 5hmC-containing DNA1, 5hmC-containing DNA2, E3 ubiquitin-protein ligase UHRF2
Authors:ZHou, T, Xiong, J, Wang, M, Yang, N, Wong, J, Zhu, B, Xu, R.M.
Deposit date:2014-03-18
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Structural Basis for Hydroxymethylcytosine Recognition by the SRA Domain of UHRF2.
Mol.Cell, 54, 2014

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