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PDB: 136 results

6NIR
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Crystal structure of a GII.4 norovirus HOV protease
Descriptor: HOV protease, HOV protease fragment
Authors:Prasad, B.V.V, Hu, L.
Deposit date:2018-12-31
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.704 Å)
Cite:GII.4 Norovirus Protease Shows pH-Sensitive Proteolysis with a Unique Arg-His Pairing in the Catalytic Site.
J. Virol., 93, 2019
1IHM
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BU of 1ihm by Molmil
CRYSTAL STRUCTURE ANALYSIS OF NORWALK VIRUS CAPSID
Descriptor: capsid protein
Authors:Prasad, B.V, Hardy, M.E, Dokland, T, Bella, J, Rossmann, M.G, Estes, M.K.
Deposit date:2001-04-19
Release date:2001-05-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:X-ray crystallographic structure of the Norwalk virus capsid
Science, 286, 1999
8TL8
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Structure of Orthoreovirus RNA Chaperone SigmaNS R6A mutant in complex with bile acid
Descriptor: GLYCOCHOLIC ACID, Protein sigma-NS
Authors:Prasad, B.V.V, Zhao, B, Hu, L, Neetu, N.
Deposit date:2023-07-26
Release date:2024-03-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of orthoreovirus RNA chaperone sigma NS, a component of viral replication factories.
Nat Commun, 15, 2024
8TL1
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Structure of Orthoreovirus RNA Chaperone SigmaNS N17
Descriptor: GLYCOCHOLIC ACID, Protein sigma-NS
Authors:Prasad, B.V.V, Zhao, B, Hu, L.
Deposit date:2023-07-26
Release date:2024-03-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Structure of orthoreovirus RNA chaperone sigma NS, a component of viral replication factories.
Nat Commun, 15, 2024
8TKA
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BU of 8tka by Molmil
Structure of Orthoreovirus RNA Chaperone SigmaNS R6A mutant
Descriptor: Protein sigma-NS
Authors:Prasad, B.V.V, Zhao, B, Hu, L.
Deposit date:2023-07-25
Release date:2024-03-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of orthoreovirus RNA chaperone sigma NS, a component of viral replication factories.
Nat Commun, 15, 2024
4IN1
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BU of 4in1 by Molmil
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
Descriptor: 3C-like protease, SULFATE ION
Authors:Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
Deposit date:2013-01-03
Release date:2013-02-20
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4IMQ
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Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
Descriptor: 3C-like protease, PEPTIDE INHIBITOR, syc8, ...
Authors:Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
Deposit date:2013-01-03
Release date:2013-02-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4IN2
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Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
Descriptor: C-like protease
Authors:Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
Deposit date:2013-01-03
Release date:2013-02-20
Last modified:2013-04-10
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4INH
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Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
Descriptor: DIMETHYL SULFOXIDE, Genome polyprotein, peptide inhibitor, ...
Authors:Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
Deposit date:2013-01-04
Release date:2013-02-20
Last modified:2013-04-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
1UH7
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BU of 1uh7 by Molmil
Crystal structure of rhizopuspepsin at pH 4.6
Descriptor: hizopuspepsin I
Authors:Prasad, B.V.L.S, Suguna, K.
Deposit date:2003-06-26
Release date:2004-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Effect of pH on the structure of rhizopuspepsin.
Acta Crystallogr.,Sect.D, 59, 2003
1UH9
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Crystal structure of rhizopuspepsin at pH 7.0
Descriptor: hizopuspepsin I
Authors:Prasad, B.V.L.S, Suguna, K.
Deposit date:2003-06-26
Release date:2004-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Effect of pH on the structure of rhizopuspepsin.
Acta Crystallogr.,Sect.D, 59, 2003
1UH8
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Crystal structure of rhizopuspepsin at pH 8.0
Descriptor: hizopuspepsin I
Authors:Prasad, B.V.L.S, Suguna, K.
Deposit date:2003-06-26
Release date:2004-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Effect of pH on the structure of rhizopuspepsin.
Acta Crystallogr.,Sect.D, 59, 2003
4IMZ
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BU of 4imz by Molmil
Structural Basis of Substrate Specificity and Protease Inhibition in Norwalk Virus
Descriptor: Genome polyprotein, SODIUM ION, THIOCYANATE ION, ...
Authors:Prasad, B.V.V, Muhaxhiri, Z, Deng, L, Shanker, S, Sankaran, B, Estes, M.K, Palzkill, T, Song, Y.
Deposit date:2013-01-03
Release date:2013-02-20
Last modified:2013-04-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of substrate specificity and protease inhibition in norwalk virus.
J.Virol., 87, 2013
4OPH
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BU of 4oph by Molmil
X-ray structure of full-length H6N6 NS1
Descriptor: Nonstructural protein 1
Authors:Carrillo, B, Choi, J.M, Bornholdt, Z.A, Sankaran, S, Rice, A.P, Prasad, B.V.V.
Deposit date:2014-02-05
Release date:2014-02-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.158 Å)
Cite:The Influenza A Virus Protein NS1 Displays Structural Polymorphism.
J.Virol., 88, 2014
4YFZ
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BU of 4yfz by Molmil
Structural basis of glycan recognition in neonate-specific rotaviruses
Descriptor: Outer capsid protein VP4, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Hu, L, Prasad, B.V.V.
Deposit date:2015-02-25
Release date:2015-09-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of glycan specificity in neonate-specific bovine-human reassortant rotavirus.
Nat Commun, 6, 2015
7RSW
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BU of 7rsw by Molmil
Crystal structure of group B human rotavirus VP8*
Descriptor: Outer capsid protein VP4, peptide
Authors:Hu, L, Salmen, W, Sankaran, B, Prasad, B.V.
Deposit date:2021-08-11
Release date:2022-07-20
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Novel fold of rotavirus glycan-binding domain predicted by AlphaFold2 and determined by X-ray crystallography.
Commun Biol, 5, 2022
5VX5
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BU of 5vx5 by Molmil
VP8* of a G2P[4] Human Rotavirus in complex with LNFP1
Descriptor: Outer capsid protein VP4, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Hu, L, Venkataram Prasad, B.V.
Deposit date:2017-05-23
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.285 Å)
Cite:Glycan recognition in globally dominant human rotaviruses.
Nat Commun, 9, 2018
7R6Z
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OXA-48 bound by Compound 3.3
Descriptor: 1,2-ETHANEDIOL, 4-amino-5-hydroxynaphthalene-2,7-disulfonic acid, Beta-lactamase, ...
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Sankaran, B, Palzkill, T.
Deposit date:2021-06-24
Release date:2021-12-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021
4F6Z
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BU of 4f6z by Molmil
Mutagenesis of zinc ligand residue Cys221 reveals plasticity in the IMP-1 metallo-b-lactamase active site
Descriptor: Beta-lactamase, CITRATE ANION, ZINC ION
Authors:Horton, L.B, Shanker, S, Sankaran, B, Mikulski, R, Brown, N.G, Phillips, K, Lykissa, E, Prasad, B.V.V, Palzkill, T.G.
Deposit date:2012-05-15
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mutagenesis of zinc ligand residue Cys221 reveals plasticity in the IMP-1 metallo-beta-lactamase active site
Antimicrob.Agents Chemother., 56, 2012
4FKD
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BU of 4fkd by Molmil
Identification of the Activator Binding Residues in the Second Cysteine-Rich Regulatory Domain of Protein Kinase C Theta
Descriptor: Protein kinase C theta type, ZINC ION
Authors:Rahman, G.M, Shanker, S, Lewin, N.E, Prasad, B.V.V, Blumberg, P.M, Das, J.
Deposit date:2012-06-13
Release date:2013-01-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.633 Å)
Cite:Identification of the Activator Binding Residues in the Second Cysteine-Rich Regulatory Domain of Protein Kinase C Theta.
Biochem.J., 451, 2013
5HAR
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BU of 5har by Molmil
OXA-163 beta-lactamase - S70G mutant
Descriptor: ACETATE ION, Beta-lactamase, CHLORIDE ION
Authors:Stojanoski, V, Adamski, C.J, Hu, L, Mehta, S.C, Sankaran, B, Prasad, B.V.V, Palzkill, T.G.
Deposit date:2015-12-30
Release date:2016-09-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Removal of the Side Chain at the Active-Site Serine by a Glycine Substitution Increases the Stability of a Wide Range of Serine beta-Lactamases by Relieving Steric Strain.
Biochemistry, 55, 2016
5HAI
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BU of 5hai by Molmil
P99 beta-lactamase mutant - S64G
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Stojanoski, V, Adamski, C.J, Hu, L, Mehta, S.C, Sankaran, B, Prasad, B.V.V, Palzkill, T.G.
Deposit date:2015-12-30
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Removal of the Side Chain at the Active-Site Serine by a Glycine Substitution Increases the Stability of a Wide Range of Serine beta-Lactamases by Relieving Steric Strain.
Biochemistry, 55, 2016
7UON
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BU of 7uon by Molmil
CTX-M-14 Y105W mutant
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Judge, A, Hu, L, Sankaran, B, Van Riper, J, Prasad, B.V.V, Palzkill, T.
Deposit date:2022-04-13
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Mapping the determinants of catalysis and substrate specificity of the antibiotic resistance enzyme CTX-M beta-lactamase.
Commun Biol, 6, 2023
7JHQ
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OXA-48 bound by Compound 2.3
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase OXA-48, CHLORIDE ION, ...
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Palzkill, T.
Deposit date:2020-07-21
Release date:2021-12-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021
6XQR
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OXA-48 bound by Compound 2.2
Descriptor: Beta-lactamase, CHLORIDE ION, [1,1'-biphenyl]-4,4'-disulfonic acid
Authors:Taylor, D.M, Hu, L, Prasad, B.V.V, Palzkill, T.
Deposit date:2020-07-10
Release date:2021-12-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Unique Diacidic Fragments Inhibit the OXA-48 Carbapenemase and Enhance the Killing of Escherichia coli Producing OXA-48.
Acs Infect Dis., 7, 2021

224004

数据于2024-08-21公开中

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