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PDB: 67 results

5NYU
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M2 G-quadruplex 10 wt% PEG8000
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
Authors:Trajkovski, M, Plavec, J, Endoh, T, Tateishi-Karimata, H, Sugimoto, N.
Deposit date:2017-05-11
Release date:2018-04-11
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
Nucleic Acids Res., 46, 2018
2M53
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G-rich VEGF aptamer with LNA modifications
Descriptor: G-rich VEGF aptamer
Authors:Marusic, M, Veedu, R.N, Plavec, J.
Deposit date:2013-02-13
Release date:2013-08-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold.
Nucleic Acids Res., 41, 2013
2JXV
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Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans
Descriptor: RNA (33-MER)
Authors:Cevec, M, Thibaudeau, C, Plavec, J.
Deposit date:2007-11-30
Release date:2008-04-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.
Nucleic Acids Res., 36, 2008
2KUN
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Three dimensional structure of HuPrP(90-231 M129 Q212P)
Descriptor: Major prion protein
Authors:Ilc, G, Giachin, G, Jaremko, M, Jaremko, L, Zhukov, I, Plavec, J, Legname, G, Benetti, F.
Deposit date:2010-02-23
Release date:2010-08-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure of the human prion protein with the pathological Q212P mutation reveals unique structural features.
Plos One, 5, 2010
2KPV
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NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans
Descriptor: RNA (34-MER)
Authors:Cevec, M, Thibaudeau, C, Plavec, J.
Deposit date:2009-10-20
Release date:2010-08-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Nucleic Acids Res., 38, 2010
2KWG
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Solution structure of a fully modified 2'-F/2'-OMe siRNA construct
Descriptor: 5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3', 5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3'
Authors:Podbevsek, P, Bhat, B, Plavec, J.
Deposit date:2010-04-09
Release date:2010-07-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct.
Nucleic Acids Res., 38, 2010
2LEJ
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human prion protein mutant HuPrP(90-231, M129, V210I)
Descriptor: Major prion protein
Authors:Biljan, I, Ilc, G, Giachin, G, Raspadori, A, Zhukov, I, Plavec, J, Legname, G.
Deposit date:2011-06-16
Release date:2011-08-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Toward the Molecular Basis of Inherited Prion Diseases: NMR Structure of the Human Prion Protein with V210I Mutation.
J.Mol.Biol., 412, 2011
2LEE
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Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M, Plavec, J, Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2LFT
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Human prion protein with E219K protective polymorphism
Descriptor: Major prion protein
Authors:Biljan, I, Ilc, G, Giacin, G, Zhukov, I, Plavec, J, Legname, G.
Deposit date:2011-07-14
Release date:2012-06-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for the protective effect of the human prion protein carrying the dominant-negative E219K polymorphism.
Biochem.J., 446, 2012
2LSB
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Solution-state NMR structure of the human prion protein
Descriptor: Major prion protein
Authors:Biljan, I, Ilc, G, Giancin, G, Zhukov, I, Plavec, J, Legname, G.
Deposit date:2012-04-26
Release date:2012-06-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for the protective effect of the human prion protein carrying the dominant-negative E219K polymorphism.
Biochem.J., 446, 2012
2LOD
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Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops
Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*GP*AP*CP*GP*GP*G)-3')
Authors:Marusic, M, Sket, P, Bauer, L, Viglasky, V, Plavec, J.
Deposit date:2012-01-23
Release date:2012-05-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops.
Nucleic Acids Res., 40, 2012
2LED
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Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene
Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
Authors:Trajkovski, M, Plavec, J, Webba da Silva, M.
Deposit date:2011-06-15
Release date:2012-03-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012
2MJJ
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A tetrahelical DNA fold adopted by alternating GGG and GCG tracts
Descriptor: 5'-D(*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*G)-3'
Authors:Kocman, V, Plavec, J.
Deposit date:2014-01-10
Release date:2014-12-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A tetrahelical DNA fold adopted by tandem repeats of alternating GGG and GCG tracts.
Nat Commun, 5, 2014
2MAE
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Transmembrane-cytosolic part of Trop2 explored by NMR and Molecular Dynamics
Descriptor: Tumor-associated calcium signal transducer 2
Authors:Vidmar, T, Pavi, M, Ilc, G, Plavec, J, Lenari, B.
Deposit date:2013-07-08
Release date:2014-07-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Transmembrane-cytosolic part of Trop2 explored by NMR and Molecular Dynamics
To be Published
2M39
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The solution structure of 3',5'-LINKED 2'-O-(2-METHOXYETHYL)-RNA DUPLEX
Descriptor: RNA (5'-R(*(C5L)P*(G48)P*(C5L)P*(G48)P*(A44)P*(A44)P*(T39)P*(T39)P*(C5L)P*(G48)P*(C5L)P*DG)-3')
Authors:Plevnik, M, Cevec, M, Plavec, J.
Deposit date:2013-01-15
Release date:2013-11-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of 2'-O-(2-methoxyethyl) modified and C5-methylated RNA dodecamer duplex.
Biochimie, 95, 2013
2LV1
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Solution-state NMR structure of prion protein mutant V210I at neutral pH
Descriptor: Major prion protein
Authors:Biljan, I, Ilc, G, Giachin, G, Legname, G, Plavec, J.
Deposit date:2012-06-26
Release date:2012-09-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Rearrangements at Physiological pH: Nuclear Magnetic Resonance Insights from the V210I Human Prion Protein Mutant.
Biochemistry, 51, 2012
2MVK
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Solution structure of phosphorylated cytosolic part of Trop2
Descriptor: Tumor-associated calcium signal transducer 2
Authors:Ilc, G, Plavec, J, Vidmar, T, Pavsic, M, Lenarcic, B.
Deposit date:2014-10-08
Release date:2015-05-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The cytosolic tail of the tumor marker protein Trop2--a structural switch triggered by phosphorylation.
Sci Rep, 5, 2015
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