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PDB: 161 results

4AZ4
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BU of 4az4 by Molmil
E.coli deformylase with Co(II) and hydrosulfide
Descriptor: COBALT (II) ION, HYDROSULFURIC ACID, PEPTIDE DEFORMYLASE
Authors:Palm, G.J, Hinrichs, W.
Deposit date:2012-06-22
Release date:2012-08-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Fret Enzyme-Based Probe for Monitoring Hydrogen Sulfide.
Inorg.Chem., 51, 2012
4D5C
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BU of 4d5c by Molmil
tetracycline repressor class J, apo form
Descriptor: SULFATE ION, TETRACYCLINE REPRESSOR PROTEIN TETR
Authors:Palm, G.J, Quast, J, Hinrichs, W.
Deposit date:2014-11-03
Release date:2016-01-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Domain Movement in Tetracycline Repressor Classes
To be Published
4ECA
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BU of 4eca by Molmil
ASPARAGINASE FROM E. COLI, MUTANT T89V WITH COVALENTLY BOUND ASPARTATE
Descriptor: L-ASPARAGINE AMIDOHYDROLASE
Authors:Palm, G.J, Lubkowski, J, Wlodawer, A.
Deposit date:1997-02-21
Release date:1997-06-16
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A covalently bound catalytic intermediate in Escherichia coli asparaginase: crystal structure of a Thr-89-Val mutant.
FEBS Lett., 390, 1996
4D5F
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BU of 4d5f by Molmil
tetracycline repressor class H, apo form
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Palm, G.J, Quast, J, Hinrichs, W.
Deposit date:2014-11-04
Release date:2016-01-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Domain Movement in Tetracycline Repressor Classes
To be Published
1QMI
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BU of 1qmi by Molmil
Crystal structure of RNA 3'-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology
Descriptor: RNA 3'-TERMINAL PHOSPHATE CYCLASE
Authors:Palm, G.J, Billy, E, Filipowicz, W, Wlodawer, A.
Deposit date:1999-09-28
Release date:2000-01-11
Last modified:2013-04-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of RNA 3'-Terminal Phosphate Cyclase, a Ubiquitous Enzyme with Unusual Topology
Structure, 8, 2000
2XQQ
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BU of 2xqq by Molmil
Human dynein light chain (DYNLL2) in complex with an in vitro evolved peptide (Ac-SRGTQTE).
Descriptor: ACETATE ION, DYNEIN LIGHT CHAIN 2, CYTOPLASMIC, ...
Authors:Rapali, P, Radnai, L, Suveges, D, Hetenyi, C, Harmat, V, Tolgyesi, F, Wahlgren, W.Y, Katona, G, Nyitray, L, Pal, G.
Deposit date:2010-09-07
Release date:2011-05-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Directed Evolution Reveals the Binding Motif Preference of the Lc8/Dynll Hub Protein and Predicts Large Numbers of Novel Binders in the Human Proteome
Plos One, 6, 2011
2PRK
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BU of 2prk by Molmil
SYNCHROTRON X-RAY DATA COLLECTION AND RESTRAINED LEAST-SQUARES REFINEMENT OF THE CRYSTAL STRUCTURE OF PROTEINASE K AT 1.5 ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, PROTEINASE K
Authors:Betzel, C, Pal, G.P, Saenger, W.
Deposit date:1987-11-30
Release date:1988-04-16
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Synchrotron X-ray data collection and restrained least-squares refinement of the crystal structure of proteinase K at 1.5 A resolution.
Acta Crystallogr.,Sect.B, 44, 1988
1RN1
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BU of 1rn1 by Molmil
THREE-DIMENSIONAL STRUCTURE OF GLN 25-RIBONUCLEASE T1 AT 1.84 ANGSTROMS RESOLUTION: STRUCTURAL VARIATIONS AT THE BASE RECOGNITION AND CATALYTIC SITES
Descriptor: RIBONUCLEASE T1 ISOZYME, SULFATE ION
Authors:Arni, R.K, Pal, G.P, Ravichandran, K.G, Tulinsky, A, Walz Junior, F.G, Metcalf, P.
Deposit date:1991-11-22
Release date:1994-01-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Three-dimensional structure of Gln25-ribonuclease T1 at 1.84-A resolution: structural variations at the base recognition and catalytic sites.
Biochemistry, 31, 1992
3P8M
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BU of 3p8m by Molmil
Human dynein light chain (DYNLL2) in complex with an in vitro evolved peptide dimerized by leucine zipper
Descriptor: Dynein light chain 2, General control protein GCN4
Authors:Rapali, P, Radnai, L, Suveges, D, Hetenyi, C, Harmat, V, Tolgyesi, F, Wahlgren, W.Y, Katona, G, Nyitray, L, Pal, G.
Deposit date:2010-10-14
Release date:2011-08-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Directed evolution reveals the binding motif preference of the LC8/DYNLL hub protein and predicts large numbers of novel binders in the human proteome.
Plos One, 6, 2011
2CTX
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BU of 2ctx by Molmil
THE REFINED CRYSTAL STRUCTURE OF ALPHA-COBRATOXIN FROM NAJA NAJA SIAMENSIS AT 2.4-ANGSTROMS RESOLUTION
Descriptor: ALPHA-COBRATOXIN
Authors:Betzel, C, Lange, G, Pal, G.P, Wilson, K.S, Maelicke, A, Saenger, W.
Deposit date:1991-09-24
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The refined crystal structure of alpha-cobratoxin from Naja naja siamensis at 2.4-A resolution.
J.Biol.Chem., 266, 1991
2XTT
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BU of 2xtt by Molmil
Bovine trypsin in complex with evolutionary enhanced Schistocerca gregaria protease inhibitor 1 (SGPI-1-P02)
Descriptor: ACETATE ION, CALCIUM ION, CATIONIC TRYPSIN, ...
Authors:Wahlgren, W.Y, Pal, G, Kardos, J, Porrogi, P, Szenthe, B, Patthy, A, Graf, L, Katona, G.
Deposit date:2010-10-12
Release date:2010-11-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:The catalytic aspartate is protonated in the Michaelis complex formed between trypsin and an in vitro evolved substrate-like inhibitor: a refined mechanism of serine protease action.
J.Biol.Chem., 286, 2011
3TVJ
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BU of 3tvj by Molmil
Catalytic fragment of MASP-2 in complex with its specific inhibitor developed by directed evolution on SGCI scaffold
Descriptor: Mannan-binding lectin serine protease 2 A chain, Mannan-binding lectin serine protease 2 B chain, Protease inhibitor SGPI-2, ...
Authors:Heja, D, Harmat, V, Dobo, J, Szasz, R, Kekesi, K.A, Zavodszky, P, Gal, P, Pal, G.
Deposit date:2011-09-20
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Monospecific Inhibitors Show That Both Mannan-binding Lectin-associated Serine Protease-1 (MASP-1) and -2 Are Essential for Lectin Pathway Activation and Reveal Structural Plasticity of MASP-2.
J.Biol.Chem., 287, 2012
2OVI
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BU of 2ovi by Molmil
Structure of the Heme Binding Protein ChuX
Descriptor: Hypothetical protein chuX
Authors:Suits, M.D.L, Pal, G.P, Jia, Z, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2007-02-13
Release date:2008-02-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure and heme binding properties of Escherichia coli O157:H7 ChuX.
Protein Sci., 18, 2009
4DJZ
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BU of 4djz by Molmil
Catalytic fragment of masp-1 in complex with its specific inhibitor developed by directed evolution on sgci scaffold
Descriptor: Mannan-binding lectin serine protease 1 heavy chain, Mannan-binding lectin serine protease 1 light chain, Protease inhibitor SGPI-2
Authors:Heja, D, Harmat, V, Fodor, K, Wilmanns, M, Dobo, J, Kekesi, K.A, Zavodszky, P, Gal, P, Pal, G.
Deposit date:2012-02-03
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Monospecific Inhibitors Show That Both Mannan-binding Lectin-associated Serine Protease-1 (MASP-1) and -2 Are Essential for Lectin Pathway Activation and Reveal Structural Plasticity of MASP-2.
J.Biol.Chem., 287, 2012
1U5I
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BU of 1u5i by Molmil
Crystal Structure analysis of rat m-calpain mutant Lys10 Thr
Descriptor: Calpain 2, large [catalytic] subunit precursor, Calpain small subunit 1
Authors:Hosfield, C.M, Pal, G.P, Elce, J.S, Jia, Z.
Deposit date:2004-07-27
Release date:2005-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Activation of calpain by Ca2+: roles of the large subunit N-terminal and domain III-IV linker peptides
J.Mol.Biol., 343, 2004
7OB2
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BU of 7ob2 by Molmil
NMR structure of the antimicrobial RiLK1 peptide in SDS micelles
Descriptor: RiLK1
Authors:Falcigno, L, D'Auria, G, Palmieri, G, Gogliettino, M, Agrillo, B.
Deposit date:2021-04-20
Release date:2021-11-17
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Key Physicochemical Determinants in the Antimicrobial Peptide RiLK1 Promote Amphipathic Structures.
Int J Mol Sci, 22, 2021
4V08
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BU of 4v08 by Molmil
Inhibited dimeric pseudorabies virus protease pUL26N at 2 A resolution
Descriptor: CHLORIDE ION, DIISOPROPYL PHOSPHONATE, MAGNESIUM ION, ...
Authors:Zuehlsdorf, M, Werten, S, Palm, G.J, Hinrichs, W.
Deposit date:2014-09-11
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin Pul26N, a Herpesvirus Serine Protease
Plos Pathog., 11, 2015
7Q5B
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BU of 7q5b by Molmil
Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene
Descriptor: DNA (19-MER), DNA (31-MER), DNA (34-MER), ...
Authors:Abascal-Palacios, G, Jochem, L, Pla-Prats, C, Beuron, F, Vannini, A.
Deposit date:2021-11-03
Release date:2022-01-26
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes.
Nat Commun, 12, 2021
2W3T
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BU of 2w3t by Molmil
Chloro complex of the Ni-Form of E.coli deformylase
Descriptor: CHLORIDE ION, ETHANOL, NICKEL (II) ION, ...
Authors:Ngo, Y.H.T, Palm, G.J, Hinrichs, W.
Deposit date:2008-11-14
Release date:2009-12-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structure of the Ni(II) Complex of Escherichia Coli Peptide Deformylase and Suggestions on Deformylase Activities Depending on Different Metal(II) Centres.
J.Biol.Inorg.Chem., 15, 2010
7AST
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BU of 7ast by Molmil
Apo Human RNA Polymerase III
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Ramsay, E.P, Abascal-Palacios, G, Daiss, J.L, King, H, Gouge, J, Pilsl, M, Beuron, F, Morris, E, Gunkel, P, Engel, C, Vannini, A.
Deposit date:2020-10-28
Release date:2020-12-23
Last modified:2020-12-30
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of human RNA polymerase III.
Nat Commun, 11, 2020
7ASV
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BU of 7asv by Molmil
Crystal structure of tWHD2 of Rpc5 subunit of human RNA Polymerase III
Descriptor: ACETATE ION, DNA-directed RNA polymerase III subunit RPC5
Authors:Vannini, A, Abascal-Palacios, G, Ramsay, E.P.
Deposit date:2020-10-28
Release date:2020-12-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of human RNA polymerase III.
Nat Commun, 11, 2020
5MIY
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BU of 5miy by Molmil
Crystal structure of the E3 ubiquitin ligase RavN from Legionella pneumophila
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin ligase RavN, SODIUM ION, ...
Authors:Lucas, M, Abascal-Palacios, G, Rojas, A.L, Hierro, A.
Deposit date:2016-11-29
Release date:2018-05-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.717 Å)
Cite:RavN is a member of a previously unrecognized group of Legionella pneumophila E3 ubiquitin ligases.
PLoS Pathog., 14, 2018
7ASU
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BU of 7asu by Molmil
Crystal structure of tWHD1 of Rpc5 subunit of human RNA Polymerase III
Descriptor: DNA-directed RNA polymerase III subunit RPC5, ZINC ION
Authors:Vannini, A, Abascal-Palacios, G, Ramsay, E.P.
Deposit date:2020-10-28
Release date:2020-12-30
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structure of human RNA polymerase III.
Nat Commun, 11, 2020
5MWV
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BU of 5mwv by Molmil
Solid-state NMR Structure of outer membrane protein G in lipid bilayers
Descriptor: Outer membrane protein G
Authors:Retel, J.S, Nieuwkoop, A.J, Hiller, M, Higman, V.A, Barbet-Massin, E, Stanek, J, Andreas, L.B, Franks, W.T, van Rossum, B.-J, Vinothkumar, K.R, Handel, L, de Palma, G.G, Bardiaux, B, Pintacuda, G, Emsley, L, Kuelbrandt, W, Oschkinat, H.
Deposit date:2017-01-20
Release date:2017-12-27
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Structure of outer membrane protein G in lipid bilayers.
Nat Commun, 8, 2017
6EU3
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BU of 6eu3 by Molmil
Apo RNA Polymerase III - closed conformation (cPOL3)
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Abascal-Palacios, G, Ramsay, E.P, Beuron, F, Morris, E, Vannini, A.
Deposit date:2017-10-27
Release date:2018-01-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of RNA polymerase III transcription initiation.
Nature, 553, 2018

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