Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45788 results

8RNY
DownloadVisualize
BU of 8rny by Molmil
Hen Egg White Lysozyme soaked with with [H2Ind][trans-RuCl4(DMSO)(HInd)]
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Oszajca, M, Flejszar, M, Szura, A, Drozdz, P, Brindell, M, Kurpiewska, K.
Deposit date:2024-01-11
Release date:2024-02-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Exploring the coordination chemistry of ruthenium complexes with lysozymes: structural and in-solution studies.
Front Chem, 12, 2024
8AT0
DownloadVisualize
BU of 8at0 by Molmil
PotF with mutation D247K
Descriptor: (2R)-1-methoxypropan-2-amine, (2~{S})-1-(2-methoxyethoxy)propan-2-amine, 1,2-ETHANEDIOL, ...
Authors:Kroeger, P, Shanmugaratnam, S, Hocker, B.
Deposit date:2022-08-22
Release date:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:A fluorescent biosensor for the visualization of Agmatine
To Be Published
8ASZ
DownloadVisualize
BU of 8asz by Molmil
PotF with mutations S87Y and A182D in complex with Agmatine
Descriptor: 1,2-ETHANEDIOL, AGMATINE, CALCIUM ION, ...
Authors:Kroeger, P, Shanmugaratnam, S, Hocker, B.
Deposit date:2022-08-22
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:A fluorescent biosensor for the visualization of Agmatine
To Be Published
2PVT
DownloadVisualize
BU of 2pvt by Molmil
Crystal structure of a new isoform of phospholipase A2 from russells viper at 2.1 A resolution
Descriptor: phospholipase A2
Authors:Kumar, S, Singh, N, Sharma, S, Kaur, P, Singh, T.P.
Deposit date:2007-05-10
Release date:2007-05-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a new isoform of phospholipase A2 from russells viper at 2.1 A resolution
To be Published
3T1E
DownloadVisualize
BU of 3t1e by Molmil
The structure of the Newcastle disease virus hemagglutinin-neuraminidase (HN) ectodomain reveals a 4-helix bundle stalk
Descriptor: Hemagglutinin-neuraminidase
Authors:Yuan, P, Swanson, K, Leser, G.P, Paterson, R.G, Lamb, R.A, Jardetzky, T.S.
Deposit date:2011-07-21
Release date:2011-09-07
Last modified:2011-09-21
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:Structure of the Newcastle disease virus hemagglutinin-neuraminidase (HN) ectodomain reveals a four-helix bundle stalk.
Proc.Natl.Acad.Sci.USA, 108, 2011
3TCI
DownloadVisualize
BU of 3tci by Molmil
Crystal structure of the decameric sequence d(CGGGCGCCCG) as Z type duplex
Descriptor: DNA (5'-D(P*CP*GP*GP*GP*CP*GP*CP*CP*CP*G)-3')
Authors:Venkadesh, S, Mandal, P.K, Gautham, N.
Deposit date:2011-08-09
Release date:2011-10-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.421 Å)
Cite:Crystal structure of the decameric sequence d(CGGGCGCCCG) as Z type duplex
To be Published
8S0U
DownloadVisualize
BU of 8s0u by Molmil
Structure of the LytM domain of PrgK from E. faecalis
Descriptor: PrgK
Authors:Sun, W.-S, Berntsson, R.P.-A.
Deposit date:2024-02-14
Release date:2024-02-28
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Breaking barriers: pCF10 type 4 secretion system relies on a self-regulating muramidase to modulate the cell wall.
Mbio, 2024
4EXL
DownloadVisualize
BU of 4exl by Molmil
Crystal structure of phosphate ABC transporter, periplasmic phosphate-binding protein PstS 1 (PBP1) from Streptococcus pneumoniae Canada MDR_19A
Descriptor: CHLORIDE ION, MAGNESIUM ION, Phosphate-binding protein pstS 1
Authors:Stogios, P.J, Wawrzak, Z, Kudritska, M, Minasov, G, Yim, V, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-04-30
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of phosphate ABC transporter, periplasmic phosphate-binding protein PstS 1 (PBP1) from Streptococcus pneumoniae Canada MDR_19A
To be Published
8B8D
DownloadVisualize
BU of 8b8d by Molmil
multimerization domain of Gaboon Viper Virus 1
Descriptor: Phosphoprotein
Authors:Tarbouriech, N, Legrand, P, Bouhris, J.M, Horie, M, Tomonaga, K, Crepin, T.
Deposit date:2022-10-04
Release date:2022-11-23
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Borna Disease Virus 1 Phosphoprotein Forms a Tetramer and Interacts with Host Factors Involved in DNA Double-Strand Break Repair and mRNA Processing.
Viruses, 14, 2022
2Q71
DownloadVisualize
BU of 2q71 by Molmil
Uroporphyrinogen Decarboxylase G168R single mutant enzyme in complex with coproporphyrinogen-III
Descriptor: COPROPORPHYRINOGEN III, Uroporphyrinogen decarboxylase
Authors:Phillips, J.D, Whitby, F.G, Stadtmueller, B.M, Edwards, C.Q, Hill, C.P, Kushner, J.P.
Deposit date:2007-06-05
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two Novel Uropophyrinogen Decarboxylase (URO-D) Mutations Causing Hepatoerythropoietic Porphyria (HEP)
Transl.Res., 149, 2007
2PJR
DownloadVisualize
BU of 2pjr by Molmil
HELICASE PRODUCT COMPLEX
Descriptor: DNA (5'-D(*AP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*C)-3'), DNA (5'-D(*TP*TP*TP*TP*T)-3'), ...
Authors:Velankar, S.S, Soultanas, P, Dillingham, M.S, Subramanya, H.S, Wigley, D.B.
Deposit date:1999-03-12
Release date:1999-04-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism.
Cell(Cambridge,Mass.), 97, 1999
2PO7
DownloadVisualize
BU of 2po7 by Molmil
Crystal structure of human ferrochelatase mutant with His 341 replaced by Cys
Descriptor: CHOLIC ACID, FE2/S2 (INORGANIC) CLUSTER, Ferrochelatase, ...
Authors:Dailey, H.A, Wu, C.-K, Horanyi, P, Medlock, A.E, Najahi-Missaoui, W, Burden, A, Dailey, T.A, Rose, J.P.
Deposit date:2007-04-25
Release date:2007-10-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Altered orientation of active site residues in variants of human ferrochelatase. Evidence for a hydrogen bond network involved in catalysis.
Biochemistry, 46, 2007
4EE3
DownloadVisualize
BU of 4ee3 by Molmil
Crystal structure of human M340H-beta-1,4-galactosyltransferase-1 (M340H-B4GAL-T1) in complex with pentasaccharide
Descriptor: 6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE, Beta-1,4-galactosyltransferase 1, GLYCEROL, ...
Authors:Ramakrishnan, B, Qasba, P.K.
Deposit date:2012-03-28
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Binding of N-acetylglucosamine (GlcNAc) beta 1-6-branched oligosaccharide acceptors to beta 4-galactosyltransferase I reveals a new ligand binding mode.
J.Biol.Chem., 287, 2012
2PX1
DownloadVisualize
BU of 2px1 by Molmil
crystal structure of the complex of bovine lactoferrin C-lobe with Ribose at 2.5 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CARBONATE ION, FE (III) ION, ...
Authors:Mir, R, Vikram, G, Sinha, M, Sharma, S, Kaur, P, Singh, T.P.
Deposit date:2007-05-14
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:crystal structure of the complex of bovine lactoferrin C-lobe with Ribose at 2.5 A resolution
To be Published
3T6A
DownloadVisualize
BU of 3t6a by Molmil
Structure of the C-terminal domain of BCAR3
Descriptor: (20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL, Breast cancer anti-estrogen resistance protein 3, UNKNOWN ATOM OR ION
Authors:Mace, P.D, Robinson, H, Riedl, S.J.
Deposit date:2011-07-28
Release date:2011-11-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:NSP-Cas protein structures reveal a promiscuous interaction module in cell signaling.
Nat.Struct.Mol.Biol., 18, 2011
3T77
DownloadVisualize
BU of 3t77 by Molmil
S25-2- A(2-4)KDO disaccharide complex
Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid, MAGNESIUM ION, S25-2 FAB (IGG1K) heavy chain, ...
Authors:Nguyen, H.P, Seto, N.O, Mackenzie, C.R, Brade, L, Kosma, P, Brade, H, Evans, S.V.
Deposit date:2011-07-29
Release date:2011-08-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Germline antibody recognition of distinct carbohydrate epitopes.
Nat.Struct.Biol., 10, 2003
2Q5U
DownloadVisualize
BU of 2q5u by Molmil
Crystal structure of IQN17
Descriptor: CHLORIDE ION, Fusion protein between yeast variant GCN4 and HIVgp41
Authors:Malashkevich, V.N, Eckert, D.M, Hong, L.H, Kim, P.S.
Deposit date:2007-06-01
Release date:2007-06-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Inhibiting HIV Entry: Discovery of D-Peptide Inhibitors that Target the Gp41 Coiled-Coil Pocket
Cell(Cambridge,Mass.), 99, 1999
6DMH
DownloadVisualize
BU of 6dmh by Molmil
A multiconformer ligand model of acylenzyme intermediate of meropenem bound to an SFC-1 E166A mutant
Descriptor: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, 1,2-ETHANEDIOL, Beta-lactamase
Authors:Hudson, B.M, van Zundert, G, Keedy, D.A, Fonseca, R, Heliou, A, Suresh, P, Borrelli, K, Day, T, Fraser, J.S, van den Bedem, H.
Deposit date:2018-06-05
Release date:2018-12-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps.
J. Med. Chem., 61, 2018
4EW9
DownloadVisualize
BU of 4ew9 by Molmil
The liganded structure of C. bescii family 3 pectate lyase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-deoxy-beta-L-threo-hex-4-enopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid, ACETATE ION, ...
Authors:Alahuhta, P.M, Lunin, V.V.
Deposit date:2012-04-26
Release date:2013-03-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structure and mode of action of Caldicellulosiruptor bescii family 3 pectate lyase in biomass deconstruction.
Acta Crystallogr. D Biol. Crystallogr., 69, 2013
2PRT
DownloadVisualize
BU of 2prt by Molmil
Structure of the Wilms Tumor Suppressor Protein Zinc Finger Domain Bound to DNA
Descriptor: DNA (5'-D(*CP*AP*GP*AP*CP*GP*CP*CP*CP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*GP*GP*GP*GP*CP*GP*TP*CP*TP*G)-3'), Wilms tumor 1, ...
Authors:Stoll, R, Lee, B.M, Debler, E.W, Laity, J.H, Wilson, I.A, Dyson, H.J, Wright, P.E.
Deposit date:2007-05-04
Release date:2008-03-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structure of the Wilms tumor suppressor protein zinc finger domain bound to DNA
J.Mol.Biol., 372, 2007
2PTR
DownloadVisualize
BU of 2ptr by Molmil
Crystal structure of Escherichia coli adenylosuccinate lyase mutant H171A with bound adenylosuccinate substrate
Descriptor: 2-[9-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-9H-PURIN-6-YLAMINO]-SUCCINIC ACID, Adenylosuccinate lyase
Authors:Tsai, M, Howell, P.L.
Deposit date:2007-05-08
Release date:2007-07-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate and Product Complexes of Escherichia coli Adenylosuccinate Lyase Provide New Insights into the Enzymatic Mechanism.
J.Mol.Biol., 370, 2007
4EKK
DownloadVisualize
BU of 4ekk by Molmil
Akt1 with AMP-PNP
Descriptor: Glycogen synthase kinase-3 beta, MANGANESE (II) ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Wu, W.-I, Vigers, G.P.A, Morales, T.H, Brandhuber, B.J.
Deposit date:2012-04-09
Release date:2012-05-23
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An ATP-Site On-Off Switch That Restricts Phosphatase Accessibility of Akt.
Sci.Signal., 5, 2012
4ELM
DownloadVisualize
BU of 4elm by Molmil
Crystal structure of the mouse CD1d-lysosulfatide-Hy19.3 TCR complex
Descriptor: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Girardi, E, Maricic, I, Wang, J, Mac, T.T, Iyer, P, Kumar, V, Zajonc, D.M.
Deposit date:2012-04-11
Release date:2012-07-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.48 Å)
Cite:Type II natural killer T cells use features of both innate-like and conventional T cells to recognize sulfatide self antigens.
Nat.Immunol., 13, 2012
8BCQ
DownloadVisualize
BU of 8bcq by Molmil
N-terminal domain of Plasmodium berghei glutamyl-tRNA synthetase (native crystal structure)
Descriptor: GLYCEROL, Glutamate--tRNA ligase, SULFATE ION
Authors:Benas, P, Jaramillo Ponce, J.R, Frugier, M, Sauter, C.
Deposit date:2022-10-17
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Solution X-ray scattering highlights discrepancies in Plasmodium multi-aminoacyl-tRNA synthetase complexes.
Protein Sci., 32, 2023
7MF8
DownloadVisualize
BU of 7mf8 by Molmil
Crystal structure of antibody 10E8v4-P100fA Fab in space group P6422
Descriptor: Antibody 10E8v4 Fab heavy chain, Antibody 10E8v4 Fab light chain
Authors:Kwon, Y.D, Kwong, P.D.
Deposit date:2021-04-08
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography.
Antibodies, 10, 2021

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon