Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 46375 results

8QN3
DownloadVisualize
BU of 8qn3 by Molmil
OPR3 wildtype in complex with NADH4
Descriptor: 1,4,5,6-Tetrahydronicotinamide adenine dinucleotide, 12-oxophytodienoate reductase 3, FLAVIN MONONUCLEOTIDE, ...
Authors:Bijelic, A, Macheroux, P, Keschbaumer, B.
Deposit date:2023-09-25
Release date:2024-01-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Loop 6 and the beta-hairpin flap are structural hotspots that determine cofactor specificity in the FMN-dependent family of ene-reductases.
Febs J., 291, 2024
8QOH
DownloadVisualize
BU of 8qoh by Molmil
Crystal structure of the kinetoplastid kinetochore protein KKT14 C-terminal domain from Apiculatamorpha spiralis
Descriptor: kinetochore protein KKT14
Authors:Carter, W, Ballmer, D, Ishii, M, Ludzia, P, Akiyoshi, B.
Deposit date:2023-09-28
Release date:2024-01-17
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Kinetoplastid kinetochore proteins KKT14-KKT15 are divergent Bub1/BubR1-Bub3 proteins.
Open Biology, 14, 2024
3DK4
DownloadVisualize
BU of 3dk4 by Molmil
Catalytic cycle of human glutathione reductase near 1 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE, Glutathione reductase, ...
Authors:Berkholz, D.S, Faber, H.R, Savvides, S.N, Karplus, P.A.
Deposit date:2008-06-24
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Catalytic cycle of human glutathione reductase near 1 A resolution.
J.Mol.Biol., 382, 2008
2HYO
DownloadVisualize
BU of 2hyo by Molmil
Crystal structure of Rv0805 N97A mutant
Descriptor: FE (III) ION, MANGANESE (II) ION, Rv0805N97A
Authors:Shenoy, A.R, Capuder, M, Draskovic, P, Lamba, D, Visweswariah, S.S, Podobnik, M.
Deposit date:2006-08-07
Release date:2006-12-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
J.Mol.Biol., 365, 2007
5QHP
DownloadVisualize
BU of 5qhp by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000554a
Descriptor: 1,2-ETHANEDIOL, 5-methoxy-2-(1~{H}-pyrazol-3-yl)phenol, Protein FAM83B
Authors:Pinkas, D.M, Bufton, J.C, Fox, A.E, Talon, R, Krojer, T, Douangamath, A, Collins, P, Zhang, R, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Bullock, A.N.
Deposit date:2018-05-18
Release date:2018-12-19
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
2HZB
DownloadVisualize
BU of 2hzb by Molmil
X-Ray Crystal Structure of Protein BH3568 from Bacillus halodurans. Northeast Structural Genomics Consortium BhR60.
Descriptor: Hypothetical UPF0052 protein BH3568
Authors:Kuzin, A.P, Chen, Y, Seetharaman, J, Benach, J, Shastry, R, Conover, K, Ma, L.C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-08-08
Release date:2006-08-22
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-Ray structure of the hypothetical UPF0052 protein BH3568 from Bacillus halodurans. Northeast Structural Genomics Consortium BhR60.
To be Published
4DVR
DownloadVisualize
BU of 4dvr by Molmil
Crystal structure of YU2 gp120 core in complex with Fab 48d and NBD-557
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, Fab 48d Heavy chain, ...
Authors:Kwon, Y.D, Kwong, P.D.
Deposit date:2012-02-23
Release date:2013-02-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site.
Plos One, 9, 2014
4DW2
DownloadVisualize
BU of 4dw2 by Molmil
The crystal structure of uPA in complex with the Fab fragment of mAb-112
Descriptor: Fab fragment of pro-uPA antibody mAb-112, SULFATE ION, Urokinase-type plasminogen activator
Authors:Jiang, L, Botkjaer, K.A, Andersen, L.M, Yuan, C, Andreasen, P.A, Huang, M.
Deposit date:2012-02-24
Release date:2013-01-16
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Rezymogenation of active urokinase induced by an inhibitory antibody.
Biochem.J., 449, 2013
5QIR
DownloadVisualize
BU of 5qir by Molmil
Covalent fragment group deposition -- Crystal Structure of OUTB2 in complex with PCM-0102305
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-[(4-fluoro-3-methylphenyl)methyl]acetamide, ...
Authors:Sethi, R, Douangamath, A, Resnick, E, Bradley, A.R, Collins, P, Brandao-Neto, J, Talon, R, Krojer, T, Bountra, C, Arrowsmith, C.H, Edwards, A, London, N, von Delft, F.
Deposit date:2018-08-10
Release date:2019-12-18
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Covalent fragment group deposition
To Be Published
4ZQC
DownloadVisualize
BU of 4zqc by Molmil
Tryptophan Synthase from Salmonella typhimurium in complex with two molecules of N-(4'-trifluoromethoxybenzoyl)-2-amino-1-ethylphosphate (F6F) inhibitor in the alpha-site and a single F6F molecule in the beta-site at 1.54 Angstrom resolution.
Descriptor: 2-{[4-(TRIFLUOROMETHOXY)BENZOYL]AMINO}ETHYL DIHYDROGEN PHOSPHATE, DIMETHYL SULFOXIDE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Hilario, E, Caulkins, B.G, Young, R.P, Dunn, M.F, Mueller, L.J, Fan, L.
Deposit date:2015-05-08
Release date:2016-02-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Visualizing the tunnel in tryptophan synthase with crystallography: Insights into a selective filter for accommodating indole and rejecting water.
Biochim.Biophys.Acta, 1864, 2016
3DV6
DownloadVisualize
BU of 3dv6 by Molmil
Crystal structure of SAG506-01, tetragonal, crystal 2
Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, Ig-like protein, MAGNESIUM ION, ...
Authors:Brooks, C.L, Blackler, R.J, Gerstenbruch, S, Kosma, P, Muller-Loennies, S, Brade, H, Evans, S.V.
Deposit date:2008-07-18
Release date:2008-12-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Pseudo-symmetry and twinning in crystals of homologous antibody Fv fragments.
Acta Crystallogr.,Sect.D, 64, 2008
2I8C
DownloadVisualize
BU of 2i8c by Molmil
Allosteric inhibition of Staphylococcus aureus D-alanine:D-alanine ligase revealed by crystallographic studies
Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-alanine-D-alanine ligase, MAGNESIUM ION, ...
Authors:Liu, S, Chang, J.S, Herberg, J.T, Horng, M, Tomich, P.K, Lin, A.H, Marotti, K.R.
Deposit date:2006-09-01
Release date:2006-09-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Allosteric inhibition of Staphylococcus aureus D-alanine:D-alanine ligase revealed by crystallographic studies.
Proc.Natl.Acad.Sci.Usa, 103, 2006
5QHO
DownloadVisualize
BU of 5qho by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human FAM83B in complex with FMOPL000010a
Descriptor: 1,2-ETHANEDIOL, Protein FAM83B, di(piperidin-1-yl)methanone
Authors:Pinkas, D.M, Bufton, J.C, Fox, A.E, Talon, R, Krojer, T, Douangamath, A, Collins, P, Zhang, R, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Bullock, A.N.
Deposit date:2018-05-18
Release date:2018-12-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
2IA4
DownloadVisualize
BU of 2ia4 by Molmil
Crystal structure of Novel amino acid binding protein from Shigella flexneri
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLUTAMIC ACID, Putative periplasmic binding transport protein
Authors:Fan, C.P, Wang, D.C.
Deposit date:2006-09-07
Release date:2007-08-21
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and functional study of novel amino acid binding protein from Shigella flexneri
To be Published
5SXW
DownloadVisualize
BU of 5sxw by Molmil
Crystal structure of the E198A variant of catalase-peroxidase KatG of Burkholderia pseudomallei
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, Catalase-peroxidase, ...
Authors:Loewen, P.C.
Deposit date:2016-08-10
Release date:2016-09-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Isonicotinic acid hydrazide conversion to Isonicotinyl-NAD by catalase-peroxidases.
J. Biol. Chem., 285, 2010
4E1Q
DownloadVisualize
BU of 4e1q by Molmil
Crystal structure of Wheat Cyclophilin A at 1.25 A resolution
Descriptor: Peptidyl-prolyl cis-trans isomerase
Authors:Sekhon, S.S, Jeong, D.G, Woo, E.J, Singh, P, Yoon, T.S.
Deposit date:2012-03-06
Release date:2013-03-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.251 Å)
Cite:Structural and biochemical characterization of the cytosolic wheat cyclophilin TaCypA-1
Acta Crystallogr.,Sect.D, 69, 2013
1W2S
DownloadVisualize
BU of 1w2s by Molmil
Solution structure of CR2 SCR 1-2 in its complex with C3d by X-ray scattering
Descriptor: COMPLEMENT C3 PRECURSOR, COMPLEMENT RECEPTOR TYPE 2 PRECURSOR,
Authors:Gilbert, H.E, Hannan, J.P, Holers, V.M, Perkins, S.J.
Deposit date:2004-07-08
Release date:2005-09-29
Last modified:2024-05-08
Method:SOLUTION SCATTERING
Cite:Solution Structure of the Complex between Cr2 Scr 1-2 and C3D of Human Complement: An X-Ray Scattering and Sedimentation Modelling Study.
J.Mol.Biol., 346, 2005
3DYD
DownloadVisualize
BU of 3dyd by Molmil
Human Tyrosine Aminotransferase
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Tyrosine aminotransferase
Authors:Karlberg, T, Moche, M, Andersson, J, Arrowsmith, C.H, Berglund, H, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kotenyova, T, Lehtio, L, Nilsson, M.E, Nordlund, P, Nyman, T, Olesen, K, Persson, C, Sagemark, J, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Wikstrom, M, Wisniewska, M, Schuler, H, Structural Genomics Consortium (SGC)
Deposit date:2008-07-27
Release date:2008-08-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Human Tyrosine Aminotransferase
To be Published
7R1M
DownloadVisualize
BU of 7r1m by Molmil
Crystal structure of ExsFA, a Bacillus cereus spore exosporium protein
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Exosporium protein, ...
Authors:Brear, P, Schack, S, Christie, G.
Deposit date:2022-02-03
Release date:2023-02-15
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of ExsFA, a Bacillus cereus spore exosporium protein"
To Be Published
7R1N
DownloadVisualize
BU of 7r1n by Molmil
Crystal structure of the Tetrameric C-terminal Big_2-CBM56 domains from Paenibacillus illinoisensis (Bacillus circulans IAM1165) beta-1,3-glucanase H
Descriptor: Beta-1,3-glucanase bglH, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Najmudin, S, Venditto, I, Fontes, C.M.G.A, Bule, P.
Deposit date:2022-02-03
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.072 Å)
Cite:Structural and biochemical characterization of C-terminal Big_2-CBM56 domains of Paenibacillus illinoisensis IAM1165 beta-1,3-glucanase H and Paenibacillus sp CBM56
To be published
1W8M
DownloadVisualize
BU of 1w8m by Molmil
Enzymatic and Structural Characterisation of Non Peptide Ligand Cyclophilin Complexes
Descriptor: ETHYL OXO(PIPERIDIN-1-YL)ACETATE, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
Authors:Kontopidis, G, Taylor, P, Walkinshaw, M.
Deposit date:2004-09-24
Release date:2004-09-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Enzymatic and Structural Characterization of Non-Peptide Ligand-Cyclophilin Complexes
Acta Crystallogr.,Sect.D, 60, 2004
8BW8
DownloadVisualize
BU of 8bw8 by Molmil
Crystal structure of the dCNK-SAM-CRIC-PDZ/dHYP-SAM complex
Descriptor: Connector enhancer of KSR protein CNK, GLYCEROL, Protein aveugle
Authors:Maisonneuve, P, Kurinov, I, Sicheri, F.
Deposit date:2022-12-06
Release date:2024-02-21
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The CNK-HYP scaffolding complex promotes RAF activation by enhancing KSR-MEK interaction.
Nat.Struct.Mol.Biol., 31, 2024
7R2S
DownloadVisualize
BU of 7r2s by Molmil
Crystal structure of a flavodiiron protein D52K mutant from Escherichia coli pressurized with krypton gas
Descriptor: Anaerobic nitric oxide reductase flavorubredoxin, FE (III) ION, FLAVIN MONONUCLEOTIDE, ...
Authors:Borges, P.T, Teixeira, M, Romao, C.V, Frazao, C.
Deposit date:2022-02-05
Release date:2023-02-15
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Crystal structure of a flavodiiron protein D52K mutant from Escherichia coli pressurized with krypton gas
To Be Published
1VGK
DownloadVisualize
BU of 1vgk by Molmil
The crystal structure of class I Major histocompatibility complex, H-2Kd at 2.0 A resolution
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-D alpha chain, ...
Authors:Zhou, M, Xu, Y, Liu, Y, Gao, G.F, Tien, P, Rao, Z.
Deposit date:2004-04-27
Release date:2005-06-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:The crystal structure of class I major histocompatibility complex, H-2Kd at 2.0 A resolution
To be Published
4ZN8
DownloadVisualize
BU of 4zn8 by Molmil
Using molecular dynamics simulations to predict domain swapping of computationally designed protein variants
Descriptor: POTASSIUM ION, computationally modified engrailed homeodomain
Authors:Huang, P.-S, Thomas, L.M, Mayo, S.L.
Deposit date:2015-05-04
Release date:2015-05-27
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015

226262

數據於2024-10-16公開中

PDB statisticsPDBj update infoContact PDBjnumon