Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45955 results

5DRD
DownloadVisualize
BU of 5drd by Molmil
Aurora A Kinase in Complex with ATP in Space Group P6122
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Aurora kinase A, MAGNESIUM ION
Authors:Janecek, M, Rossmann, M, Sharma, P, Emery, A, McKenzie, G.J, Huggins, D.J, Stockwell, S, Stokes, J.A, Almeida, E.G, Hardwick, B, Narvaez, A.J, Hyvonen, M, Spring, D.R, Venkitaraman, A.R.
Deposit date:2015-09-15
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Allosteric modulation of AURKA kinase activity by a small-molecule inhibitor of its protein-protein interaction with TPX2.
Sci Rep, 6, 2016
5ZYO
DownloadVisualize
BU of 5zyo by Molmil
Crystal Structure of domain-swapped Circular-Permuted YbeA (CP74) from Escherichia coli
Descriptor: Ribosomal RNA large subunit methyltransferase H
Authors:Ko, K.T, Huang, K.F, Lyu, P.C, Hsu, S.T.D.
Deposit date:2018-05-26
Release date:2019-05-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Untying a Knotted SPOUT RNA Methyltransferase by Circular Permutation Results in a Domain-Swapped Dimer.
Structure, 27, 2019
6IZC
DownloadVisualize
BU of 6izc by Molmil
Crystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticus
Descriptor: Beta-lactamase, PENTAETHYLENE GLYCOL, SULFATE ION
Authors:Ma, Q, Li, P.
Deposit date:2018-12-19
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural analysis of the CARB beta-lactamase from Vibrio parahaemolyticus facilitates application of the beta-lactam/ beta-lactamase inhibitor therapy.
Biochimie, 171-172, 2020
5DUR
DownloadVisualize
BU of 5dur by Molmil
Influenza A virus H5 hemagglutinin globular head in complex with antibody 100F4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of Antibody 100F4, Hemagglutinin, ...
Authors:Zuo, T, Sun, J, Wang, G, Zhou, P, Wang, X, Zhang, L.
Deposit date:2015-09-20
Release date:2015-12-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Comprehensive analysis of antibody recognition in convalescent humans from highly pathogenic avian influenza H5N1 infection
Nat Commun, 6, 2015
6EA6
DownloadVisualize
BU of 6ea6 by Molmil
Structure of VACV poxin 2'3' cGAMP-specific nuclease
Descriptor: Protein B2
Authors:Eaglesham, J.B, Kranzusch, P.J.
Deposit date:2018-08-02
Release date:2019-02-06
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:Viral and metazoan poxins are cGAMP-specific nucleases that restrict cGAS-STING signalling.
Nature, 566, 2019
5XSS
DownloadVisualize
BU of 5xss by Molmil
XylFII molecule
Descriptor: Periplasmic binding protein/LacI transcriptional regulator, beta-D-xylopyranose
Authors:Li, J.X, Wang, C.Y, Zhang, P.
Deposit date:2017-06-15
Release date:2017-08-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Molecular mechanism of environmental d-xylose perception by a XylFII-LytS complex in bacteria
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3RTP
DownloadVisualize
BU of 3rtp by Molmil
Design and synthesis of brain penetrant selective JNK inhibitors with improved pharmacokinetic properties for the prevention of neurodegeneration
Descriptor: Mitogen-activated protein kinase 10, N-[4-cyano-3-(1H-1,2,4-triazol-5-yl)thiophen-2-yl]-2-(2-oxo-3,4-dihydroquinolin-1(2H)-yl)acetamide
Authors:Bowers, S, Truong, A.P, Neitz, R.J, Hom, R.K, Sealy, J.M, Probst, G.D, Quincy, Q, Peterson, B, Chan, W, Galemmo Jr, R.A, Konradi, A.W, Sham, H.L, Pan, H, Lin, M, Yao, N, Artis, D.R, Zhang, H, Chen, L, Dryer, M, Samant, B, Zmolek, W, Wong, K, Lorentzen, C, Goldbach, E, Tonn, G, Quinn, K.P, Sauer, J, Wright, S, Powell, K, Ruslim, L, Ren, Z, Bard, F, Yednock, T.A, Griswold-Prenne, I.
Deposit date:2011-05-03
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Design and synthesis of brain penetrant selective JNK inhibitors with improved pharmacokinetic properties for the prevention of neurodegeneration.
Bioorg.Med.Chem.Lett., 21, 2011
4M8X
DownloadVisualize
BU of 4m8x by Molmil
GS-8374, a Novel Phosphonate-Containing Inhibitor of HIV-1 Protease, Effectively Inhibits HIV PR Mutants with Amino Acid Insertions
Descriptor: DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE, Protease
Authors:Grantz saskova, K, Brynda, J, Rezacova, P, Kozisek, M, Konvalinka, J.
Deposit date:2013-08-14
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:GS-8374, a prototype phosphonate-containing inhibitor of HIV-1 protease, effectively inhibits protease mutants with amino acid insertions.
J.Virol., 88, 2014
7ZMC
DownloadVisualize
BU of 7zmc by Molmil
Ketosynthase domain of module 4 from Brevibacillus Brevis orphan BGC11
Descriptor: Putative polyketide synthase
Authors:Tittes, Y.U, Herbst, D.A, Jakob, R.P, Maier, T.
Deposit date:2022-04-19
Release date:2022-09-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The structure of a polyketide synthase bimodule core.
Sci Adv, 8, 2022
4MBQ
DownloadVisualize
BU of 4mbq by Molmil
TPR3 of FimV from P. aeruginosa (PAO1)
Descriptor: Motility protein FimV
Authors:Nguyen, Y, Zhang, K, Daniel-Ivad, M, Robinson, H, Wolfram, F, Sugiman-Marangos, S.N, Junop, M.S, Burrows, L.L, Howell, P.L.
Deposit date:2013-08-19
Release date:2014-08-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.006 Å)
Cite:Crystal structure of TPR2 from FimV
To be Published
3RZT
DownloadVisualize
BU of 3rzt by Molmil
Neutron structure of perdeuterated rubredoxin using rapid (14 hours) data
Descriptor: FE (III) ION, Rubredoxin
Authors:Munshi, P, Chung, C.-L, Weiss, K.L, Blakeley, M.P, Myles, D.A.A, Meilleur, F.
Deposit date:2011-05-12
Release date:2011-12-28
Last modified:2023-09-13
Method:NEUTRON DIFFRACTION (1.7504 Å)
Cite:Rapid visualization of hydrogen positions in protein neutron crystallographic structures.
Acta Crystallogr.,Sect.D, 68, 2012
6EQC
DownloadVisualize
BU of 6eqc by Molmil
Cryo-EM reconstruction of a complex of a binding protein and human adenovirus C5 hexon
Descriptor: Hexon protein, scFv of 9C12 antibody
Authors:Schmid, M, Ernst, P, Honegger, A, Suomalainen, M, Zimmermann, M, Braun, L, Stauffer, S, Thom, C, Dreier, B, Eibauer, M, Kipar, A, Vogel, V, Greber, U.F, Medalia, O, Plueckthun, A.
Deposit date:2017-10-12
Release date:2018-02-07
Last modified:2018-02-14
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Adenoviral vector with shield and adapter increases tumor specificity and escapes liver and immune control.
Nat Commun, 9, 2018
5XSL
DownloadVisualize
BU of 5xsl by Molmil
Crystal structure of the PWWP domain of human hepatoma-derived growth factor
Descriptor: Hepatoma-derived growth factor
Authors:Chen, L.Y, Huang, Y.C, Hsieh, Y.C, Lin, P.J, Chen, C.J.
Deposit date:2017-06-14
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the PWWP domain at 3.3 Angstroms resolution
To Be Published
1EGR
DownloadVisualize
BU of 1egr by Molmil
SEQUENCE-SPECIFIC 1H N.M.R. ASSIGNMENTS AND DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF REDUCED ESCHERICHIA COLI GLUTAREDOXIN
Descriptor: GLUTAREDOXIN
Authors:Sodano, P, Xia, T.-H, Bushweller, J.H, Bjornberg, O, Holmgren, A, Billeter, M, Wuthrich, K.
Deposit date:1991-10-08
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Sequence-specific 1H n.m.r. assignments and determination of the three-dimensional structure of reduced Escherichia coli glutaredoxin.
J.Mol.Biol., 221, 1991
7ZM9
DownloadVisualize
BU of 7zm9 by Molmil
Ketosynthase domain 3 of Brevibacillus Brevis orphan BGC11
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Putative polyketide synthase
Authors:Tittes, Y.U, Herbst, D.A, Jakob, R.P, Maier, T.
Deposit date:2022-04-19
Release date:2022-09-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:The structure of a polyketide synthase bimodule core.
Sci Adv, 8, 2022
6EP1
DownloadVisualize
BU of 6ep1 by Molmil
Transthyretin in complex with 5-(4-nitrophenylazo)-3-iodosalicylic acid
Descriptor: 5-(4-nitrophenylazo)-3-iodosalicylic acid, Transthyretin
Authors:Leite, J.P, Gales, L.
Deposit date:2017-10-10
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Targeting transthyretin in Alzheimer's disease: Drug discovery of small-molecule chaperones as disease-modifying drug candidates for Alzheimer's disease
Eur.J.Med.Chem., 2021
3NXB
DownloadVisualize
BU of 3nxb by Molmil
Crystal Structure of the Bromodomain of human CECR2
Descriptor: 1,2-ETHANEDIOL, Cat eye syndrome critical region protein 2
Authors:Filippakopoulos, P, Picaud, S, Keates, T, Muniz, J, von Delft, F, Arrowsmith, C.H, Edwards, A, Weigelt, J, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2010-07-13
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
6E6R
DownloadVisualize
BU of 6e6r by Molmil
1.50 A resolution structure of the C-terminally truncated [2Fe-2S] ferredoxin (Bfd) R26E mutant from Pseudomonas aeruginosa
Descriptor: Bacterioferritin-associated ferredoxin, FE2/S2 (INORGANIC) CLUSTER
Authors:Lovell, S, Wijerathne, H, Battaile, K.P, Yao, H, Wang, Y, Rivera, M.
Deposit date:2018-07-25
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Bfd, a New Class of [2Fe-2S] Protein That Functions in Bacterial Iron Homeostasis, Requires a Structural Anion Binding Site.
Biochemistry, 57, 2018
3ENI
DownloadVisualize
BU of 3eni by Molmil
Crystal structure of the Fenna-Matthews-Olson Protein from Chlorobaculum Tepidum
Descriptor: BACTERIOCHLOROPHYLL A, Bacteriochlorophyll a protein
Authors:Tronrud, D, Camara-Artigas, A, Blankenship, R, Allen, J.P.
Deposit date:2008-09-25
Release date:2009-05-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria.
Photosynth.Res., 100, 2009
6J5C
DownloadVisualize
BU of 6j5c by Molmil
Louping ill virus envelope protein
Descriptor: Envelope protein E
Authors:Yang, X, Qi, J, Peng, R, Dai, L, Gould, E.A, Tien, P, Gao, G.F.
Deposit date:2019-01-10
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Molecular Basis of a Protective/Neutralizing Monoclonal Antibody Targeting Envelope Proteins of both Tick-Borne Encephalitis Virus and Louping Ill Virus.
J. Virol., 93, 2019
2RGO
DownloadVisualize
BU of 2rgo by Molmil
Structure of Alpha-Glycerophosphate Oxidase from Streptococcus sp.: A Template for the Mitochondrial Alpha-Glycerophosphate Dehydrogenase
Descriptor: Alpha-Glycerophosphate Oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Colussi, T, Boles, W, Mallett, T.C, Karplus, P.A, Claiborne, A.
Deposit date:2007-10-04
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of alpha-glycerophosphate oxidase from Streptococcus sp.: a template for the mitochondrial alpha-glycerophosphate dehydrogenase.
Biochemistry, 47, 2008
4M1D
DownloadVisualize
BU of 4m1d by Molmil
Crystal structure of anti-HIV-1 Fab 447-52D in complex with V3 cyclic peptide MN
Descriptor: Cyclic V3 Arch Peptide, Fab mAb 447-52D Heavy Chain, Fab mAb 447-52D Light Chain, ...
Authors:Killikelly, A, Kong, X.P.
Deposit date:2013-08-02
Release date:2013-09-04
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Thermodynamic Signatures of the Antigen Binding Site of mAb 447-52D Targeting the Third Variable Region of HIV-1 gp120.
Biochemistry, 52, 2013
6J7H
DownloadVisualize
BU of 6j7h by Molmil
Crystal structure of blue fluorescent protein from metagenomic library
Descriptor: Blue fluorescent protein
Authors:Seo, P.W, Kim, J.S.
Deposit date:2019-01-18
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.309 Å)
Cite:Structure-Guided Generation of a Redox-Independent Blue Fluorescent Protein from mBFP.
J.Mol.Biol., 431, 2019
5Y5N
DownloadVisualize
BU of 5y5n by Molmil
Crystal structure of human Sirtuin 2 in complex with a selective inhibitor
Descriptor: 2-[[3-(2-phenylethoxy)phenyl]amino]benzamide, NAD-dependent protein deacetylase sirtuin-2, ZINC ION
Authors:Mellini, P, Itoh, Y, Tsumoto, H, Li, Y, Suzuki, M, Tokuda, N, Kakizawa, T, Miura, Y, Takeuchi, J, Lahtela-Kakkonen, M, Suzuki, T.
Deposit date:2017-08-09
Release date:2017-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Potent mechanism-based sirtuin-2-selective inhibition by anin situ-generated occupant of the substrate-binding site, "selectivity pocket" and NAD+-binding site.
Chem Sci, 8, 2017
1E5C
DownloadVisualize
BU of 1e5c by Molmil
Internal xylan binding domain from C. fimi Xyn10A, R262G mutant
Descriptor: XYLANASE D
Authors:Simpson, P.J, Hefang, X, Bolam, D.N, Gilbert, H.J, Williamson, M.P.
Deposit date:2000-07-24
Release date:2001-05-25
Last modified:2018-10-24
Method:SOLUTION NMR
Cite:The Structural Basis for the Ligand Specificity of Family 2 Carbohydrate Binding Nodules
J.Biol.Chem., 275, 2000

224004

數據於2024-08-21公開中

PDB statisticsPDBj update infoContact PDBjnumon