Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45955 件

1FW6
DownloadVisualize
BU of 1fw6 by Molmil
CRYSTAL STRUCTURE OF A TAQ MUTS-DNA-ADP TERNARY COMPLEX
分子名称: 5'-D(*GP*CP*GP*AP*CP*GP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*CP*TP*CP*GP*TP*C)-3', 5'-D(*GP*GP*AP*CP*GP*AP*GP*CP*CP*GP*CP*CP*GP*CP*TP*AP*GP*CP*GP*TP*CP*G)-3', ADENOSINE-5'-DIPHOSPHATE, ...
著者Junop, M.S, Obmolova, G, Rausch, K, Hsieh, P, Yang, W.
登録日2000-09-21
公開日2001-02-19
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Composite active site of an ABC ATPase: MutS uses ATP to verify mismatch recognition and authorize DNA repair.
Mol.Cell, 7, 2001
2VGJ
DownloadVisualize
BU of 2vgj by Molmil
Crystal structure of Actinomadura R39 DD-peptidase complexed with a peptidoglycan-mimetic cephalosporin
分子名称: CEPHALOSPORIN, D-ALANYL-D-ALANINE CARBOXYPEPTIDASE, MAGNESIUM ION, ...
著者Sauvage, E, kerff, F, Herman, R, Charlier, P.
登録日2007-11-14
公開日2008-11-25
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structures of Complexes of Bacterial Dd-Peptidases with Peptidoglycan-Mimetic Ligands: The Substrate Specificity Puzzle.
J.Mol.Biol., 381, 2008
4YBN
DownloadVisualize
BU of 4ybn by Molmil
Structure of the FAD and Heme binding protein msmeg_4975 from Mycobacterium smegmatis
分子名称: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, Flavin-nucleotide-binding protein, ...
著者Ahmed, F.H, Carr, P.D, Jackson, C.J.
登録日2015-02-18
公開日2015-10-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
J.Mol.Biol., 427, 2015
7OZ0
DownloadVisualize
BU of 7oz0 by Molmil
Solution structure of the N-terminal domain of human telomeric Repeat-binding factor 2-interacting protein 1 (hRap1): implication for Rap1-TRF2 interaction in Human.
分子名称: Telomeric repeat-binding factor 2-interacting protein 1
著者Miron, S, LeDU, M.H, Gaullier, G, Zinn-justin, S, Cuniasse, P.
登録日2021-06-25
公開日2022-10-05
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution structure of the N-terminal domain of human telomeric Repeat-binding factor 2-interacting protein 1 (hRap1): implication for Rap1-TRF2 interaction in Human.
To Be Published
1TYG
DownloadVisualize
BU of 1tyg by Molmil
Structure of the thiazole synthase/ThiS complex
分子名称: PHOSPHATE ION, Thiazole biosynthesis protein thiG, yjbS
著者Settembre, E.C, Dorrestein, P.C, Zhai, H, Chatterjee, A, McLafferty, F.W, Begley, T.P, Ealick, S.E.
登録日2004-07-07
公開日2004-09-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Thiamin Biosynthesis in Bacillus subtilis: Structure of the Thiazole Synthase/Sulfur Carrier Protein Complex
Biochemistry, 43, 2004
1XF4
DownloadVisualize
BU of 1xf4 by Molmil
Structure of ligand-free Fab DNA-1 in space group P321 solved from crystals with perfect hemihedral twinning
分子名称: Fab heavy chain, Fab light chain, SULFATE ION
著者Schuermann, J.P, Prewitt, S.P, Deutscher, S.L, Tanner, J.J.
登録日2004-09-13
公開日2005-04-12
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Evidence for Structural Plasticity of Heavy Chain Complementarity-determining Region 3 in Antibody-ssDNA Recognition
J.Mol.Biol., 347, 2005
4ZXF
DownloadVisualize
BU of 4zxf by Molmil
Crystal Structure of a Soluble Variant of Monoglyceride Lipase from Saccharomyces Cerevisiae in Complex with a Substrate Analog
分子名称: 1-{3-[(R)-hydroxy(octadecyloxy)phosphoryl]propyl}triaza-1,2-dien-2-ium, Monoglyceride lipase, NITRATE ION, ...
著者Aschauer, P, Lichtenegger, J, Rengachari, S, Gruber, K, Oberer, M.
登録日2015-05-20
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the Saccharomyces cerevisiae monoglyceride lipase Yju3p.
Biochim.Biophys.Acta, 1861, 2016
5LX3
DownloadVisualize
BU of 5lx3 by Molmil
CRYSTAL STRUCTURE OF VISFATIN IN COMPLEX WITH SAR154782.
分子名称: 6-[4-[(6-azanylpyridin-3-yl)methylcarbamoylamino]-3-fluoranyl-phenyl]-2-(ethylamino)-~{N}-(2-piperidin-1-ylethyl)pyridine-3-carboxamide, Nicotinamide phosphoribosyltransferase
著者Bertrand, T, Marquette, J.P.
登録日2016-09-20
公開日2017-10-25
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献CRYSTAL STRUCTURE OF VISFATIN IN COMPLEX WITH SAR154782.
To Be Published
1XM6
DownloadVisualize
BU of 1xm6 by Molmil
Catalytic Domain Of Human Phosphodiesterase 4B In Complex With (R)-Mesopram
分子名称: (5R)-5-(4-methoxy-3-propoxyphenyl)-5-methyl-1,3-oxazolidin-2-one, MAGNESIUM ION, ZINC ION, ...
著者Card, G.L, England, B.P, Suzuki, Y, Fong, D, Powell, B, Lee, B, Luu, C, Tabrizizad, M, Gillette, S, Ibrahim, P.N, Artis, D.R, Bollag, G, Milburn, M.V, Kim, S.-H, Schlessinger, J, Zhang, K.Y.J.
登録日2004-10-01
公開日2004-12-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases.
STRUCTURE, 12, 2004
2JDK
DownloadVisualize
BU of 2jdk by Molmil
Lectin PA-IIL of P.aeruginosa complexed with disaccharide derivative
分子名称: CALCIUM ION, FUCOSE-BINDING LECTIN PA-IIL, METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXYLATE, ...
著者Marotte, K, Sabin, C, Preville, C, Pymbock, M, Deguise, I, Wimmerova, M, Mitchell, E.P, Imberty, A, Roy, R.
登録日2007-01-10
公開日2007-07-24
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献X-Ray Structures and Thermodynamics of the Interaction of Pa-Iil from Pseudomonas Aeruginosa with Disaccharide Derivatives.
Chemmedchem, 2, 2007
6YUC
DownloadVisualize
BU of 6yuc by Molmil
Crystal structure of Uba4-Urm1 from Chaetomium thermophilum
分子名称: Adenylyltransferase and sulfurtransferase uba4, Ubiquitin-related modifier 1, ZINC ION
著者Grudnik, P, Pabis, M, Ethiraju Ravichandran, K, Glatt, S.
登録日2020-04-26
公開日2020-07-22
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation.
Embo J., 39, 2020
4A6J
DownloadVisualize
BU of 4a6j by Molmil
Structural model of ParM filament based on CryoEM map
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PLASMID SEGREGATION PROTEIN PARM
著者Gayathri, P, Fujii, T, Moller-Jensen, J, Van Den Ent, F, Namba, K, Lowe, J.
登録日2011-11-04
公開日2012-11-21
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献A Bipolar Spindle of Antiparallel Parm Filaments Drives Bacterial Plasmid Segregation.
Science, 338, 2012
1XOR
DownloadVisualize
BU of 1xor by Molmil
Catalytic Domain Of Human Phosphodiesterase 4D In Complex With Zardaverine
分子名称: 6-(4-DIFLUOROMETHOXY-3-METHOXY-PHENYL)-2H-PYRIDAZIN-3-ONE, MAGNESIUM ION, ZINC ION, ...
著者Card, G.L, England, B.P, Suzuki, Y, Fong, D, Powell, B, Lee, B, Luu, C, Tabrizizad, M, Gillette, S, Ibrahim, P.N, Artis, D.R, Bollag, G, Milburn, M.V, Kim, S.-H, Schlessinger, J, Zhang, K.Y.J.
登録日2004-10-06
公開日2004-12-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases.
STRUCTURE, 12, 2004
5M07
DownloadVisualize
BU of 5m07 by Molmil
Crystal structure of Mycobacterium tuberculosis PknI kinase domain, C20A mutant
分子名称: SODIUM ION, Serine/threonine-protein kinase PknI
著者Lisa, M.N, Wagner, T, Alexandre, M, Barilone, N, Raynal, B, Alzari, P.M, Bellinzoni, M.
登録日2016-10-03
公開日2017-01-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The crystal structure of PknI from Mycobacterium tuberculosis shows an inactive, pseudokinase-like conformation.
FEBS J., 284, 2017
7TQ4
DownloadVisualize
BU of 7tq4 by Molmil
Structure of SARS-CoV-2 3CL protease in complex with the cyclopropane based inhibitor 6c
分子名称: 3C-like proteinase, N~2~-({[(1R,2R)-2-(3-chlorophenyl)cyclopropyl]methoxy}carbonyl)-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide
著者Lovell, S, Battaile, K.P, Nguyen, H.N, Chamandi, S.D, Picard, H.R, Madden, T.K, Thruman, H.A, Kim, Y, Groutas, W.C, Chang, K.O.
登録日2022-01-26
公開日2022-06-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Broad-Spectrum Cyclopropane-Based Inhibitors of Coronavirus 3C-like Proteases: Biochemical, Structural, and Virological Studies.
Acs Pharmacol Transl Sci, 6, 2023
6YVV
DownloadVisualize
BU of 6yvv by Molmil
Condensin complex from S.cerevisiae ATP-free apo bridged state
分子名称: Condensin complex subunit 1,Ycs4, Condensin complex subunit 2,Brn1, Structural maintenance of chromosomes protein 2,Structural maintenance of chromosomes protein 2, ...
著者Lee, B.-G, Cawood, C, Gutierrez-Escribano, P, Nakane, T, Merkel, F, Hassler, M, Haering, C.H, Aragon, L, Lowe, J.
登録日2020-04-28
公開日2020-07-15
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (7.5 Å)
主引用文献Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism.
Nat.Struct.Mol.Biol., 27, 2020
1X7N
DownloadVisualize
BU of 1x7n by Molmil
The crystal structure of Pyrococcus furiosus phosphoglucose isomerase with bound 5-phospho-D-arabinonate and Manganese
分子名称: 5-PHOSPHOARABINONIC ACID, Glucose-6-phosphate isomerase, MANGANESE (II) ION
著者Berrisford, J.M, Akerboom, J, Brouns, S, Sedelnikova, S.E, Turnbull, A.P, van der Oost, J, Salmon, L, Hardre, R, Murray, I.A, Blackburn, G.M, Rice, D.W, Baker, P.J.
登録日2004-08-16
公開日2004-10-12
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献The structures of inhibitor complexes of Pyrococcus furiosus phosphoglucose isomerase provide insights into substrate binding and catalysis.
J.Mol.Biol., 343, 2004
5M08
DownloadVisualize
BU of 5m08 by Molmil
Crystal structure of Mycobacterium tuberculosis PknI kinase domain, C20A_R136A double mutant
分子名称: Serine/threonine-protein kinase PknI
著者Lisa, M.N, Wagner, T, Alexandre, M, Barilone, N, Raynal, B, Alzari, P.M, Bellinzoni, M.
登録日2016-10-03
公開日2017-01-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献The crystal structure of PknI from Mycobacterium tuberculosis shows an inactive, pseudokinase-like conformation.
FEBS J., 284, 2017
5M09
DownloadVisualize
BU of 5m09 by Molmil
Crystal structure of Mycobacterium tuberculosis PknI kinase domain, C20A_R136N double mutant
分子名称: SODIUM ION, Serine/threonine-protein kinase PknI
著者Lisa, M.N, Wagner, T, Alexandre, M, Barilone, N, Raynal, B, Alzari, P.M, Bellinzoni, M.
登録日2016-10-03
公開日2017-01-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献The crystal structure of PknI from Mycobacterium tuberculosis shows an inactive, pseudokinase-like conformation.
FEBS J., 284, 2017
6YWP
DownloadVisualize
BU of 6ywp by Molmil
Structure of apo-CutA
分子名称: CutA, MAGNESIUM ION
著者Malik, D, Kobylecki, K, Krawczyk, P, Poznanski, J, Jakielaszek, A, Napiorkowska, A, Dziembowski, A, Tomecki, R, Nowotny, M.
登録日2020-04-29
公開日2020-08-05
最終更新日2020-09-30
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine.
Nucleic Acids Res., 48, 2020
2UYF
DownloadVisualize
BU of 2uyf by Molmil
Single mutant F111L DntR from Burkholderia sp. strain DNT in complex with thiocyanate
分子名称: ACETATE ION, GLYCEROL, REGULATORY PROTEIN, ...
著者Lonneborg, R, Smirova, I, Dian, C, Leonard, G.A, Mcsweeney, S, Brzezinski, P.
登録日2007-04-04
公開日2007-08-21
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献In Vivo and in Vitro Investigation of Transcriptional Regulation by Dntr.
J.Mol.Biol., 372, 2007
5A6M
DownloadVisualize
BU of 5a6m by Molmil
Determining the specificities of the catalytic site from the very high resolution structure of the thermostable glucuronoxylan endo-Beta-1, 4-xylanase, CtXyn30A, from Clostridium thermocellum with a xylotetraose bound
分子名称: CARBOHYDRATE BINDING FAMILY 6, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ...
著者Freire, F, Verma, A.K, Bule, P, Goyal, A, Fontes, C.M.G.A, Najmudin, S.
登録日2015-06-30
公開日2016-10-19
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Conservation in the Mechanism of Glucuronoxylan Hydrolysis Revealed by the Structure of Glucuronoxylan Xylano-Hydrolase (Ctxyn30A) from Clostridium Thermocellum
Acta Crystallogr.,Sect.D, 72, 2016
6QAY
DownloadVisualize
BU of 6qay by Molmil
Structural investigation of the TasA anchoring protein TapA from Bacillus subtilis
分子名称: TasA anchoring/assembly protein
著者Higman, V.A, Schmieder, P, Diehl, A, Oschkinat, H.
登録日2018-12-20
公開日2020-01-29
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献TapA acts as specific chaperone in TasA filament formation by strand complementation.
Proc.Natl.Acad.Sci.USA, 120, 2023
1A41
DownloadVisualize
BU of 1a41 by Molmil
TYPE 1-TOPOISOMERASE CATALYTIC FRAGMENT FROM VACCINIA VIRUS
分子名称: SULFATE ION, TOPOISOMERASE I
著者Cheng, C, Kussie, P, Pavletich, N, Shuman, S.
登録日1998-02-10
公開日1999-06-01
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases.
Cell(Cambridge,Mass.), 92, 1998
7EB0
DownloadVisualize
BU of 7eb0 by Molmil
Cryo-EM structure of SARS-CoV-2 Spike D614G variant, one RBD-up conformation 2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D.
登録日2021-03-08
公開日2021-06-23
最終更新日2022-01-05
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献D614G mutation in the SARS-CoV-2 spike protein enhances viral fitness by desensitizing it to temperature-dependent denaturation.
J.Biol.Chem., 297, 2021

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon