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PDB: 45955 results

7UOP
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Prefusion-stabilized Nipah virus fusion protein complexed with Fab 4H3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 4H3 heavy chain, Fab 4H3 light chain, ...
Authors:Byrne, P.O, McLellan, J.S.
Deposit date:2022-04-13
Release date:2023-03-29
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein.
Nat Commun, 14, 2023
4BSC
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BU of 4bsc by Molmil
Human H7N9 Influenza Virus Haemagglutinin (with Asn-133 Glycosylation) in Complex with Human Receptor Analogue 6'-SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEMAGGLUTININ, ...
Authors:Xiong, X, Haire, L.F, Martin, S.R, Wharton, S.A, Daniels, R.S, Bennett, M.S, McCauley, J.W, Collins, P.J, Walker, P.A, Skehel, J.J, Gamblin, S.J.
Deposit date:2013-06-10
Release date:2013-07-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Receptor Binding by an H7N9 Influenza Virus from Humans
Nature, 499, 2013
4PE0
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Crystal Structure of Calcium-loaded S100B bound to SBi4434
Descriptor: 2-[(2-hydroxyethyl)sulfanyl]naphthalene-1,4-dione, CALCIUM ION, Protein S100-B
Authors:Cavalier, M.C, Pierce, P.D, Wilder, P.T, Neau, D, Toth, E.A, Weber, D.J.
Deposit date:2014-04-22
Release date:2014-11-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Covalent Small Molecule Inhibitors of Ca(2+)-Bound S100B.
Biochemistry, 53, 2014
7UP9
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Prefusion-stabilized Nipah virus fusion protein complexed with Fab 2D3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 2D3 heavy chain, ...
Authors:Byrne, P.O, McLellan, J.S.
Deposit date:2022-04-14
Release date:2023-03-29
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein.
Nat Commun, 14, 2023
7UPD
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BU of 7upd by Molmil
Prefusion-stabilized Nipah virus fusion protein complexed with Fab 2B12
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 2B12 heavy chain, Fab 2B12 light chain, ...
Authors:Byrne, P.O, McLellan, J.S.
Deposit date:2022-04-14
Release date:2023-03-29
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein.
Nat Commun, 14, 2023
4PNS
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BU of 4pns by Molmil
Crystal Structure of human Tankyrase 2 in complex with INH2BP.
Descriptor: 6-amino-5-iodo-2H-chromen-2-one, GLYCEROL, Tankyrase-2, ...
Authors:Qiu, W, Lam, R, Romanov, V, Gordon, R, Gebremeskel, S, Vodsedalek, J, Thompson, C, Beletskaya, I, Battaile, K.P, Pai, E.F, Chirgadze, N.Y.
Deposit date:2014-05-25
Release date:2014-10-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2.
Acta Crystallogr.,Sect.D, 70, 2014
7UPA
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Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 1H8 heavy chain, Fab 1H8 light chain, ...
Authors:Byrne, P.O, McLellan, J.S.
Deposit date:2022-04-14
Release date:2023-03-29
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein.
Nat Commun, 14, 2023
4FZ9
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Crystal structure of the complex of Ribosome inactivating protein from Momordica Balsamina with disaccharide, N-Acetylglucosamine (beta-1, 4) Mannose at 1.7 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2012-07-06
Release date:2012-08-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the complex of Ribosome inactivating protein from Momordica Balsamina with disaccharide, N-Acetylglucosamine (beta-1, 4) Mannose at 1.7 A resolution
To be Published
4BSD
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BU of 4bsd by Molmil
Human H7N9 Influenza Virus Haemagglutinin (with Asn-133 Glycosylation) in Complex with Avian Receptor Analogue 3'-SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEMAGGLUTININ, ...
Authors:Xiong, X, Haire, L.F, Martin, S.R, Wharton, S.A, Daniels, R.S, Bennett, M.S, McCauley, J.W, Collins, P.J, Walker, P.A, Skehel, J.J, Gamblin, S.J.
Deposit date:2013-06-10
Release date:2013-07-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Receptor Binding by an H7N9 Influenza Virus from Humans
Nature, 499, 2013
6UG7
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Complex of ch28/11 Fab and SSEA-4 (tetragonal form)
Descriptor: 1,2-ETHANEDIOL, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, SULFATE ION, ...
Authors:Soliman, C, Ramsland, P.A.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:The terminal sialic acid of stage-specific embryonic antigen-4 has a crucial role in binding to a cancer-targeting antibody.
J.Biol.Chem., 295, 2020
5DN2
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BU of 5dn2 by Molmil
Human NRP2 b1 domain in complex with the peptide corresponding to the C-terminus of VEGF-A
Descriptor: 1,4-DIETHYLENE DIOXIDE, GLYCEROL, Neuropilin-2, ...
Authors:Tsai, Y.C.I, Frankel, P, Fotinou, C, Rana, R, Zachary, I, Djordjevic, S.
Deposit date:2015-09-09
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural studies of neuropilin-2 reveal a zinc ion binding site remote from the vascular endothelial growth factor binding pocket.
Febs J., 283, 2016
6UG8
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Complex of ch28/11 Fab and SSEA-4 (monoclinic form)
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ch28/11 Fab heavy chain, ch28/11 Fab light chain
Authors:Soliman, C, Ramsland, P.A.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The terminal sialic acid of stage-specific embryonic antigen-4 has a crucial role in binding to a cancer-targeting antibody.
J.Biol.Chem., 295, 2020
8BY4
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BU of 8by4 by Molmil
Crystal structure of Odorant Binding Protein 1 from Aedes albopictus (Asian tiger mosquito)
Descriptor: Odorant-binding protein 1
Authors:Liggri, P.G.V, Tsitsanou, K.E, Zographos, S.E.
Deposit date:2022-12-12
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Odorant Binding Protein 1 from Aedes albopictus (Asian tiger mosquito)
To Be Published
4G2U
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BU of 4g2u by Molmil
Crystal Structure Analysis of Ostertagia ostertagi ASP-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ancylostoma-secreted protein-like protein, SULFATE ION
Authors:Weeks, S.D, Borloo, J, Geldhof, P, Vercruysse, J, Strelkov, S.V.
Deposit date:2012-07-13
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of Ostertagia ostertagi ASP-1: insights into disulfide-mediated cyclization and dimerization
Acta Crystallogr.,Sect.D, 69, 2013
4PIN
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BU of 4pin by Molmil
Ergothioneine-biosynthetic methyltransferase EgtD in complex with N,N-dimethylhistidine
Descriptor: Histidine-specific methyltransferase EgtD, N,N-dimethyl-L-histidine, PHOSPHATE ION
Authors:Vit, A, Seebeck, F.P, Blankenfeldt, W.
Deposit date:2014-05-09
Release date:2014-12-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ergothioneine Biosynthetic Methyltransferase EgtD Reveals the Structural Basis of Aromatic Amino Acid Betaine Biosynthesis.
Chembiochem, 16, 2015
5O5O
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BU of 5o5o by Molmil
X-ray crystal structure of RapZ from Escherichia coli (P32 space group)
Descriptor: RNase adapter protein RapZ, SULFATE ION
Authors:Gonzalez, G.M, Durica-Mitic, S, Hardwick, S.W, Moncrieffe, M, Resch, M, Neumann, P, Ficner, R, Gorke, B, Luisi, B.F.
Deposit date:2017-06-02
Release date:2017-08-30
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.404 Å)
Cite:Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism.
Nucleic Acids Res., 45, 2017
6UJI
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BU of 6uji by Molmil
Low resolution crystal structure (5.5 A) of the anthrax toxin protective antigen heptamer prepore D425A mutant
Descriptor: Protective antigen PA-63
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Bann, J.G.
Deposit date:2019-10-03
Release date:2020-10-07
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Structure of the anthrax protective antigen D425A dominant negative mutant reveals a stalled intermediate state of pore maturation.
J.Mol.Biol., 2022
6UNT
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BU of 6unt by Molmil
Barrier-to-autointegration factor soaked in DMSO: 1 of 14 in MSCS set
Descriptor: Barrier-to-autointegration factor, ETHANOL
Authors:Agarwal, S, Smith, M, De La Rosa, I, Kliment, A.V, Swartz, P, Segura-Totten, M, Mattos, C.
Deposit date:2019-10-13
Release date:2020-10-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor.
Acta Crystallogr D Struct Biol, 76, 2020
6C7Y
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BU of 6c7y by Molmil
Crystal structure of inhibitory protein SOCS1 in complex with JAK1 kinase domain
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Liau, N.P.D, Laktyushin, A, Lucet, I.S, Murphy, J.M, Yao, S, Callaghan, K, Nicola, N.A, Kershaw, N.J, Babon, J.J.
Deposit date:2018-01-23
Release date:2018-05-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:The molecular basis of JAK/STAT inhibition by SOCS1.
Nat Commun, 9, 2018
6C8U
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BU of 6c8u by Molmil
Solution structure of Musashi2 RRM1
Descriptor: RNA-binding protein Musashi homolog 2
Authors:Xing, M, Lan, L, Douglas, J.T, Gao, P, Hanzlik, R.P, Xu, L.
Deposit date:2018-01-25
Release date:2019-01-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Crystal and solution structures of human oncoprotein Musashi-2 N-terminal RNA recognition motif 1.
Proteins, 2019
4ENT
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BU of 4ent by Molmil
Structure of the S234A variant of E. coli KatE
Descriptor: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, Catalase HPII, PROTOPORPHYRIN IX CONTAINING FE
Authors:Loewen, P.C, Jha, V.
Deposit date:2012-04-13
Release date:2012-05-02
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Influence of main channel structure on H(2)O(2) access to the heme cavity of catalase KatE of Escherichia coli.
Arch.Biochem.Biophys., 526, 2012
6UMU
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BU of 6umu by Molmil
Human apo PD-1 triple mutant
Descriptor: CHLORIDE ION, Programmed cell death protein 1
Authors:Tang, S, Kim, P.S.
Deposit date:2019-10-10
Release date:2019-11-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.183 Å)
Cite:A high-affinity human PD-1/PD-L2 complex informs avenues for small-molecule immune checkpoint drug discovery.
Proc.Natl.Acad.Sci.USA, 116, 2019
6C9H
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BU of 6c9h by Molmil
non-phosphorylated AMP-activated protein kinase bound to pharmacological activator R734
Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-1, 5'-AMP-activated protein kinase subunit beta-1, 5'-AMP-activated protein kinase subunit gamma-1, ...
Authors:Yan, Y, Zhou, X.E, Novick, S, Shaw, S.J, Li, Y, Hitoshi, Y, Brunzelle, J.S, Griffin, P.R, Xu, H.E, Melcher, K.
Deposit date:2018-01-26
Release date:2018-11-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structures of AMP-activated protein kinase bound to novel pharmacological activators in phosphorylated, non-phosphorylated, and nucleotide-free states.
J. Biol. Chem., 294, 2019
5DQN
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BU of 5dqn by Molmil
Polyethylene 600-bound form of P450 CYP125A3 mutant from Myobacterium Smegmatis - W83Y
Descriptor: CITRIC ACID, Cytochrome P450 CYP125, PENTAETHYLENE GLYCOL, ...
Authors:Ortiz de Montellano, P.J, Frank, D.J, Waddling, C.A.
Deposit date:2015-09-15
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.262 Å)
Cite:Cytochrome P450 125A4, the Third Cholesterol C-26 Hydroxylase from Mycobacterium smegmatis.
Biochemistry, 54, 2015
6CAC
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BU of 6cac by Molmil
Crystal structure of NDM-1 metallo-beta-lactamase harboring an insertion of a Pro residue in L3 loop
Descriptor: CADMIUM ION, CALCIUM ION, COBALT (II) ION, ...
Authors:Alzari, P.M, Giannini, E, Palacios, A, Mojica, M, Bonomo, R, Llarrull, L, Vila, A.
Deposit date:2018-01-30
Release date:2018-10-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:The Reaction Mechanism of Metallo-beta-Lactamases Is Tuned by the Conformation of an Active-Site Mobile Loop.
Antimicrob. Agents Chemother., 63, 2019

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