Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 70 件
6LFX
DownloadVisualize
BU of 6lfx by Molmil
Crystal structure of PCB4scFv(hN56D) in complex with PCB#77
分子名称: 1,2-bis(chloranyl)-4-(3-chloranyl-4-methoxy-phenyl)benzene, PCB4scFv(hN56D)
著者Nakamura, T, Yamagata, Y, Morioka, H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Crystal structure of PCB4scFv(hN56D) in complex with PCB#77
To Be Published
2LQH
DownloadVisualize
BU of 2lqh by Molmil
NMR structure of FOXO3a transactivation domains (CR2C-CR3) in complex with CBP KIX domain (2b3l conformation)
分子名称: CREB-binding protein, Forkhead box O3
著者Wang, F, Marshall, C.B, Yamamoto, K, Li, G.B, Gasmi-Seabrook, G.M.C, Okada, H, Mak, T.W, Ikura, M.
登録日2012-03-06
公開日2012-05-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment.
Proc.Natl.Acad.Sci.USA, 109, 2012
2D2P
DownloadVisualize
BU of 2d2p by Molmil
The solution structure of micelle-bound peptide
分子名称: Pituitary adenylate cyclase activating polypeptide-38
著者Tateishi, Y, Jee, J.G, Inooka, H, Tochio, H, Hiroaki, H, Shirakawa, M.
登録日2005-09-14
公開日2006-09-26
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献The solution structure of micelle-bound peptide
To be Published
6LFW
DownloadVisualize
BU of 6lfw by Molmil
Crystal structure of PCB4scFv(hN56D) in complex with PCB#126
分子名称: 1,2,3-tris(chloranyl)-5-(3-chloranyl-4-methoxy-phenyl)benzene, PCB4scFv(hN56D), SODIUM ION
著者Nakamura, T, Yamagata, Y, Morioka, H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Crystal structure of PCB4scFv(hN56D) in complex with PCB#126
To Be Published
6LCS
DownloadVisualize
BU of 6lcs by Molmil
Crystal structure of 73MuL9 Fv-clasp fragment in complex with GA-pyridine analogue
分子名称: (2~{S})-6-[4-(hydroxymethyl)-3-oxidanyl-pyridin-1-ium-1-yl]-2-(phenylmethoxycarbonylamino)hexanoic acid, PHOSPHATE ION, VH-SARAH, ...
著者Nakamura, T, Takagi, J, Yamagata, Y, Morioka, H.
登録日2019-11-19
公開日2020-11-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Molecular recognition of a single-chain Fv antibody specific for GA-pyridine, an advanced glycation end-product (AGE), elucidated using biophysical techniques and synthetic antigen analogues.
J.Biochem., 170, 2021
6LFV
DownloadVisualize
BU of 6lfv by Molmil
Crystal structure of PCB4scFv(hN56D)
分子名称: PCB4scFv(hN56D)
著者Nakamura, T, Yamagata, Y, Morioka, H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of PCB4scFv(hN56D)
To Be Published
2SSP
DownloadVisualize
BU of 2ssp by Molmil
LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA
分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*TP*(AAB)P*AP*TP*CP*TP*T)-3'), PROTEIN (URACIL-DNA GLYCOSYLASE)
著者Parikh, S.S, Mol, C.D, Slupphaug, G, Bharati, S, Krokan, H.E, Tainer, J.A.
登録日1999-04-28
公開日1999-05-06
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.
EMBO J., 17, 1998
2ZWS
DownloadVisualize
BU of 2zws by Molmil
Crystal Structure Analysis of neutral ceramidase from Pseudomonas aeruginosa
分子名称: FORMIC ACID, GLYCEROL, MAGNESIUM ION, ...
著者Kakuta, Y, Okino, N, Inoue, T, Okano, H, Ito, M.
登録日2008-12-17
公開日2009-03-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase.
J.Biol.Chem., 284, 2009
1ITY
DownloadVisualize
BU of 1ity by Molmil
Solution structure of the DNA binding domain of human TRF1
分子名称: TRF1
著者Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-02-15
公開日2002-03-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a telomeric DNA complex of human TRF1
Structure, 9, 2001
1IV6
DownloadVisualize
BU of 1iv6 by Molmil
Solution Structure of the DNA Complex of Human TRF1
分子名称: 5'-D(*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3', 5'-D(*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3', TELOMERIC REPEAT BINDING FACTOR 1
著者Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-14
公開日2002-04-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a telomeric DNA complex of human TRF1.
Structure, 9, 2001
4BWS
DownloadVisualize
BU of 4bws by Molmil
Crystal structure of the heterotrimer of PQBP1, U5-15kD and U5-52kD.
分子名称: CD2 ANTIGEN CYTOPLASMIC TAIL-BINDING PROTEIN 2, POLYGLUTAMINE-BINDING PROTEIN 1, THIOREDOXIN-LIKE PROTEIN 4A
著者Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Morimoto, T, Nabeshima, Y, Okazawa, H.
登録日2013-07-04
公開日2014-04-30
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
1EMJ
DownloadVisualize
BU of 1emj by Molmil
URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT
分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3'), URACIL, ...
著者Parikh, S.S, Walcher, G, Jones, G.D, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A.
登録日2000-03-16
公開日2000-05-16
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
Proc.Natl.Acad.Sci.USA, 97, 2000
1UGH
DownloadVisualize
BU of 1ugh by Molmil
CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE IN COMPLEX WITH A PROTEIN INHIBITOR: PROTEIN MIMICRY OF DNA
分子名称: PROTEIN (URACIL-DNA GLYCOSYLASE INHIBITOR), PROTEIN (URACIL-DNA GLYCOSYLASE)
著者Mol, C.D, Arvai, A.S, Sanderson, R.J, Slupphaug, G, Kavli, B, Krokan, H.E, Mosbaugh, D.W, Tainer, J.A.
登録日1999-02-05
公開日1999-02-16
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: protein mimicry of DNA.
Cell(Cambridge,Mass.), 82, 1995
1EMH
DownloadVisualize
BU of 1emh by Molmil
CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA
分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3'), URACIL-DNA GLYCOSYLASE
著者Parikh, S.S, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A.
登録日2000-03-16
公開日2000-05-16
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects.
Proc.Natl.Acad.Sci.USA, 97, 2000
2RS2
DownloadVisualize
BU of 2rs2 by Molmil
1H, 13C, and 15N Chemical Shift Assignments for Musashi1 RBD1:r(GUAGU) complex
分子名称: RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1
著者Ohyama, T, Nagata, T, Tsuda, K, Imai, T, Okano, H, Yamazaki, T, Katahira, M.
登録日2011-06-27
公開日2011-12-28
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
Nucleic Acids Res., 2011
4SKN
DownloadVisualize
BU of 4skn by Molmil
A NUCLEOTIDE-FLIPPING MECHANISM FROM THE STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO DNA
分子名称: DNA (5'-D(*AP*AP*AP*GP*CP*CP*GP*CP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*GP*(D1P)P*GP*GP*CP*TP*T)-3'), PROTEIN (URACIL-DNA GLYCOSYLASE), ...
著者Slupphaug, G, Mol, C.D, Kavli, B, Arvai, A.S, Krokan, H.E, Tainer, J.A.
登録日1999-02-20
公開日1999-02-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA.
Nature, 384, 1996
2LQI
DownloadVisualize
BU of 2lqi by Molmil
NMR structure of FOXO3a transactivation domains (CR2C-CR3) in complex with CBP KIX domain (2l3b conformation)
分子名称: CREB-binding protein, Forkhead box O3
著者Wang, F, Marshall, C.B, Yamamoto, K, Li, G.B, Gasmi-Seabrook, G.M.C, Okada, H, Mak, T.W, Ikura, M.
登録日2012-03-06
公開日2012-05-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment.
Proc.Natl.Acad.Sci.USA, 109, 2012
1SSP
DownloadVisualize
BU of 1ssp by Molmil
WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA
分子名称: 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*(D1P)P*AP*TP*CP*TP*T)-3', URACIL, ...
著者Parikh, S.S, Mol, C.D, Slupphaug, G, Bharati, S, Krokan, H.E, Tainer, J.A.
登録日1999-04-28
公開日1999-05-06
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.
EMBO J., 17, 1998
4CDO
DownloadVisualize
BU of 4cdo by Molmil
Crystal structure of PQBP1 bound to spliceosomal U5-15kD
分子名称: THIOREDOXIN-LIKE PROTEIN 4A, POLYGLUTAMINE-BINDING PROTEIN
著者Mizuguchi, M, Obita, T, Serita, T, Kojima, R, Nabeshima, Y, Okazawa, H.
登録日2013-11-05
公開日2014-04-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mutations in the Pqbp1 Gene Prevent its Interaction with the Spliceosomal Protein U5-15Kd.
Nat.Commun., 5, 2014
2Z33
DownloadVisualize
BU of 2z33 by Molmil
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
分子名称: 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
著者Yamane, T, Okamura, H, Ikeguchi, M, Nishimura, Y, Kidera, A.
登録日2007-05-31
公開日2008-04-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
<123

 

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon