Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 7397 results

5JBT
DownloadVisualize
BU of 5jbt by Molmil
Mesotrypsin in complex with cleaved amyloid precursor like protein 2 inhibitor (APLP2)
Descriptor: Amyloid-like protein 2, CALCIUM ION, PRSS3 protein, ...
Authors:Kayode, O, Wang, R, Pendlebury, D, Soares, A, Radisky, E.S.
Deposit date:2016-04-13
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:An Acrobatic Substrate Metamorphosis Reveals a Requirement for Substrate Conformational Dynamics in Trypsin Proteolysis.
J. Biol. Chem., 291, 2016
5XHL
DownloadVisualize
BU of 5xhl by Molmil
Crystal Structure of HasAp with Gallium Phthalocyanine
Descriptor: Heme acquisition protein HasAp, Phthalocyanine containing GA
Authors:Shoji, O, Shisaka, Y, Iwai, Y, Sugimoto, H, Shiro, Y, Watanabe, Y.
Deposit date:2017-04-21
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of HasAp with Gallium Phthalocyanine
to be published
5XUS
DownloadVisualize
BU of 5xus by Molmil
Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TTTA PAM)
Descriptor: 1,2-ETHANEDIOL, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*A)-3'), ...
Authors:Yamano, T, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2017-06-26
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1.
Mol. Cell, 67, 2017
5XHJ
DownloadVisualize
BU of 5xhj by Molmil
Crystal Structure of P450BM3 with 5-Cyclohexylvaleroyl-L-Tryptophan
Descriptor: 5-cyclohexylpentanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Suzuki, K, Shoji, O, Stanfield, J.K, Kasai, C, Sugimoto, H, Shiro, Y, Watanabe, Y.
Deposit date:2017-04-21
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Control of stereoselectivity of benzylic hydroxylation catalysed by wild-type cytochrome P450BM3 using decoy molecules
CATALYSIS SCIENCE AND TECHNOLOGY, 7, 2017
5XH6
DownloadVisualize
BU of 5xh6 by Molmil
Crystal structure of the Acidaminococcus sp. BV3L6 Cpf1 RVR variant in complex with crRNA and target DNA (TATA PAM)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CRISPR-associated endonuclease Cpf1, ...
Authors:Nishimasu, H, Yamano, T, Ishitani, R, Nureki, O.
Deposit date:2017-04-19
Release date:2017-06-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Altered PAM Recognition by Engineered CRISPR-Cpf1
Mol. Cell, 67, 2017
5XIE
DownloadVisualize
BU of 5xie by Molmil
Crystal Structure of HasAp with 5-ethynyl-10,20-diphenylporphyrin
Descriptor: 5-Ethynyl-10,20-diphenylporphyrin containing FE, Heme acquisition protein HasAp
Authors:Shoji, O, Uehara, H, Sugimoto, H, Shiro, Y, Watanabe, Y.
Deposit date:2017-04-26
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group
Angew. Chem. Int. Ed. Engl., 56, 2017
5ITQ
DownloadVisualize
BU of 5itq by Molmil
Crystal Structure of Human NEIL1, Free Protein
Descriptor: Endonuclease 8-like 1
Authors:Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C.
Deposit date:2016-03-17
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair
Proc.Natl.Acad.Sci.USA, 113, 2016
3BTM
DownloadVisualize
BU of 3btm by Molmil
THE CRYSTAL STRUCTURES OF THE COMPLEXES BETWEEN BOVINE BETA-TRYPSIN AND TEN P1 VARIANTS OF BPTI
Descriptor: CALCIUM ION, PROTEIN (PANCREATIC TRYPSIN INHIBITOR), PROTEIN (TRYPSIN), ...
Authors:Helland, R, Otlewski, J, Sundheim, O, Dadlez, M, Smalas, A.O.
Deposit date:1999-03-10
Release date:2000-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structures of the complexes between bovine beta-trypsin and ten P1 variants of BPTI.
J.Mol.Biol., 287, 1999
5ITY
DownloadVisualize
BU of 5ity by Molmil
Crystal Structure of Human NEIL1(P2G) bound to duplex DNA containing Thymine Glycol
Descriptor: DNA (26-MER), Endonuclease 8-like 1, GLYCEROL
Authors:Zhu, C, Lu, L, Zhang, J, Yue, Z, Song, J, Zong, S, Liu, M, Stovicek, O, Gao, Y, Yi, C.
Deposit date:2016-03-17
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair
Proc.Natl.Acad.Sci.USA, 113, 2016
5J3T
DownloadVisualize
BU of 5j3t by Molmil
Crystal structure of S. pombe Dcp2:Dcp1:Edc1 mRNA decapping complex
Descriptor: Edc1, FORMIC ACID, MAGNESIUM ION, ...
Authors:Valkov, E, Muthukumar, S, Chang, C.T, Jonas, S, Weichenrieder, O, Izaurralde, E.
Deposit date:2016-03-31
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.
Nat.Struct.Mol.Biol., 23, 2016
5XUU
DownloadVisualize
BU of 5xuu by Molmil
Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (TCCA PAM)
Descriptor: 1,2-ETHANEDIOL, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*TP*CP*CP*A)-3'), ...
Authors:Yamano, T, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2017-06-26
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1.
Mol. Cell, 67, 2017
1ZUA
DownloadVisualize
BU of 1zua by Molmil
Crystal Structure Of AKR1B10 Complexed With NADP+ And Tolrestat
Descriptor: Aldo-keto reductase family 1 member B10, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TOLRESTAT
Authors:Gallego, O, Ruiz, F.X, Ardevol, A, Dominguez, M, Alvarez, R, de Lera, A.R, Rovira, C, Farres, J, Fita, I, Pares, X.
Deposit date:2005-05-30
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural basis for the high all-trans-retinaldehyde reductase activity of the tumor marker AKR1B10.
Proc.Natl.Acad.Sci.USA, 104, 2007
1ZVX
DownloadVisualize
BU of 1zvx by Molmil
Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (R-enantiomer)
Descriptor: (1R)-1-{[(4'-METHOXY-1,1'-BIPHENYL-4-YL)SULFONYL]AMINO}-2-METHYLPROPYLPHOSPHONIC ACID, CALCIUM ION, Neutrophil collagenase, ...
Authors:Pochetti, G, Gavuzzo, E, Campestre, C, Agamennone, M, Tortorella, P, Consalvi, V, Gallina, C, Hiller, O, Tschesche, H, Tucker, P.A, Mazza, F.
Deposit date:2005-06-03
Release date:2006-05-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural insight into the stereoselective inhibition of MMP-8 by enantiomeric sulfonamide phosphonates.
J.Med.Chem., 49, 2006
6VJ2
DownloadVisualize
BU of 6vj2 by Molmil
3.10 Angstrom Resolution Crystal Structure of Foldase Protein (PrsA) from Lactococcus lactis
Descriptor: Foldase
Authors:Minasov, G, Shuvalova, L, Kiryukhina, O, Endres, M, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-01-14
Release date:2020-02-05
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:3.10 Angstrom Resolution Crystal Structure of Foldase Protein (PrsA) from Lactococcus lactis
To Be Published
3J7Z
DownloadVisualize
BU of 3j7z by Molmil
Structure of the E. coli 50S subunit with ErmCL nascent chain
Descriptor: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Arenz, S, Meydan, S, Starosta, A.L, Berninghausen, O, Beckmann, R, Vazquez-Laslop, N, Wilson, D.N.
Deposit date:2014-08-27
Release date:2014-10-22
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
Mol.Cell, 56, 2014
3JT1
DownloadVisualize
BU of 3jt1 by Molmil
Legionella pneumophila glucosyltransferase Lgt1, UDP-bound form
Descriptor: Putative uncharacterized protein, URIDINE-5'-DIPHOSPHATE
Authors:Lu, W, Du, J, Belyi, Y, Stahl, M, Zivilikidis, T, Gerhardt, S, Aktories, K, Einsle, O.
Deposit date:2009-09-11
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of the Action of Glucosyltransferase Lgt1 from Legionella pneumophila.
J.Mol.Biol., 2009
3JQW
DownloadVisualize
BU of 3jqw by Molmil
Crystal structure of Clostridium histolyticum colH collagenase collagen-binding domain 3 at 2 Angstrom resolution in presence of calcium
Descriptor: CALCIUM ION, ColH protein
Authors:Sakon, J, Philominathan, S.T.L, Matsushita, O, Bauer, R.
Deposit date:2009-09-08
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Comparison of ColH and ColG Collagen-Binding Domains from Clostridium histolyticum.
J.Bacteriol., 195, 2013
3KA4
DownloadVisualize
BU of 3ka4 by Molmil
Frog M-ferritin with cobalt
Descriptor: CHLORIDE ION, COBALT (II) ION, Ferritin, ...
Authors:Tosha, T, Ng, H.L, Theil, E, Alber, T, Bhattasali, O.
Deposit date:2009-10-18
Release date:2010-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Moving Metal Ions through Ferritin-Protein Nanocages from Three-Fold Pores to Catalytic Sites.
J.Am.Chem.Soc., 132, 2010
1ZS0
DownloadVisualize
BU of 1zs0 by Molmil
Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (S-enantiomer)
Descriptor: (1S)-1-{[(4'-METHOXY-1,1'-BIPHENYL-4-YL)SULFONYL]AMINO}-2-METHYLPROPYLPHOSPHONIC ACID, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Pochetti, G, Gavuzzo, E, Campestre, C, Agamennone, M, Tortorella, P, Consalvi, V, Gallina, C, Hiller, O, Tschesche, H, Tucker, P.A, Mazza, F.
Deposit date:2005-05-23
Release date:2006-05-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural insight into the stereoselective inhibition of MMP-8 by enantiomeric sulfonamide phosphonates.
J.Med.Chem., 49, 2006
3KA6
DownloadVisualize
BU of 3ka6 by Molmil
Frog M-ferritin, EED mutant, with cobalt
Descriptor: CHLORIDE ION, COBALT (II) ION, Ferritin, ...
Authors:Tosha, T, Ng, H.L, Theil, E, Alber, T, Bhattasali, O.
Deposit date:2009-10-18
Release date:2010-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Moving Metal Ions through Ferritin-Protein Nanocages from Three-Fold Pores to Catalytic Sites.
J.Am.Chem.Soc., 132, 2010
1ZZP
DownloadVisualize
BU of 1zzp by Molmil
Solution structure of the F-actin binding domain of Bcr-Abl/c-Abl
Descriptor: Proto-oncogene tyrosine-protein kinase ABL1
Authors:Hantschel, O, Wiesner, S, Guttler, T, Mackereth, C.D, Rix, L.L.R, Mikes, Z, Dehne, J, Gorlich, D, Sattler, M, Superti-Furga, G.
Deposit date:2005-06-14
Release date:2005-08-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Basis for the Cytoskeletal Association of Bcr-Abl/c-Abl.
Mol.Cell, 19, 2005
2AAF
DownloadVisualize
BU of 2aaf by Molmil
Structure of H278A arginine deiminase with L-arginine forming a S-alkylthiouronium reaction intermediate
Descriptor: Arginine deiminase
Authors:Galkin, A, Lu, X, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2005-07-13
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase.
J.Biol.Chem., 280, 2005
2A1C
DownloadVisualize
BU of 2a1c by Molmil
Solution structure of CSP1
Descriptor: CSP1
Authors:Johnsborg, O, Kristiansen, P.E.
Deposit date:2005-06-20
Release date:2006-05-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A Hydrophobic Patch in the Pneumococcal Competence Pheromone CSP is Essential for Specificity and Biological Activity
To be Published
3K9U
DownloadVisualize
BU of 3k9u by Molmil
Crystal structure of paia acetyltransferase (ta0374) from thermoplasma acidophilum
Descriptor: ACETYL COENZYME *A, BROMIDE ION, CHLORIDE ION, ...
Authors:Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-10-16
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the novel PaiA N-acetyltransferase from Thermoplasma acidophilum involved in the negative control of sporulation and degradative enzyme production.
Proteins, 79, 2011
3JQX
DownloadVisualize
BU of 3jqx by Molmil
Crystal structure of Clostridium histolyticum colH collagenase collagen binding domain 3 at 2.2 Angstrom resolution in the presence of calcium and cadmium
Descriptor: CADMIUM ION, CALCIUM ION, ColH protein
Authors:Sakon, J, Philominathan, S.T.L, Bauer, R, Matsushita, O.
Deposit date:2009-09-08
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Comparison of ColH and ColG Collagen-Binding Domains from Clostridium histolyticum.
J.Bacteriol., 195, 2013

223532

数据于2024-08-07公开中

PDB statisticsPDBj update infoContact PDBjnumon