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PDB: 137 results

8JCD
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BU of 8jcd by Molmil
Human H2BFWTH100R nucleosome with 601 DNA
Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ...
Authors:Ding, D.B, Ishibashi, T, Nguyen, T.T.
Deposit date:2023-05-11
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Human H2BFWTH100R nucleosome with 601 DNA
to be published
8JBX
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Human canonical 601 DNA nucleosome
Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-C/E/F/G/I, ...
Authors:Ding, D.B, Ishibashi, T, Nguyen, T.T.
Deposit date:2023-05-09
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Human canonical 601 DNA nucleosome
to be published
8OX0
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Structure of apo telomeric nucleosome
Descriptor: Histone H2A type 1-C, Histone H2B type 1-C/E/F/G/I, Histone H3.1, ...
Authors:Hu, H, van Roon, A.M.M, Ghanim, G.E, Ahsan, B, Oluwole, A, Peak-Chew, S, Robinson, C.V, Nguyen, T.H.D.
Deposit date:2023-04-28
Release date:2023-08-30
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structural basis of telomeric nucleosome recognition by shelterin factor TRF1.
Sci Adv, 9, 2023
8OX1
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Structure of TRF1core in complex with telomeric nucleosome
Descriptor: Histone H2A type 1-C, Histone H2B type 1-C/E/F/G/I, Histone H3.1, ...
Authors:Hu, H, van Roon, A.M.M, Ghanim, G.E, Ahsan, B, Oluwole, A, Peak-Chew, S, Robinson, C.V, Nguyen, T.H.D.
Deposit date:2023-04-28
Release date:2023-08-30
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural basis of telomeric nucleosome recognition by shelterin factor TRF1.
Sci Adv, 9, 2023
7A4X
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BU of 7a4x by Molmil
tRNA-guanine transglycosylase C158S/C281S/Y330C/H333A mutant in complex with dimethyl sulfoxide
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Nguyen, D, Nguyen, T.X.P, Heine, A, Klebe, G.
Deposit date:2020-08-20
Release date:2021-06-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Targeting a Cryptic Pocket in a Protein-Protein Contact by Disulfide-Induced Rupture of a Homodimeric Interface.
Acs Chem.Biol., 16, 2021
5JNM
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BU of 5jnm by Molmil
Crystal structure of MtlD from Staphylococcus aureus at 1.7-Angstrom resolution
Descriptor: Mannitol-1-phosphate 5-dehydrogenase, SULFATE ION
Authors:Ta, H.M, Nguyen, T, Kim, T, Kim, K.K.
Deposit date:2016-04-30
Release date:2017-11-08
Last modified:2019-09-04
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Targeting Mannitol Metabolism as an Alternative Antimicrobial Strategy Based on the Structure-Function Study of Mannitol-1-Phosphate Dehydrogenase in Staphylococcus aureus.
Mbio, 10, 2019
8SZJ
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BU of 8szj by Molmil
Human glutaminase C (Y466W) with L-Gln and Pi, filamentous form
Descriptor: GLUTAMINE, Glutaminase kidney isoform, mitochondrial, ...
Authors:Feng, S, Aplin, C, Nguyen, T.-T.T, Milano, S.K, Cerione, R.A.
Deposit date:2023-05-29
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Filament formation drives catalysis by glutaminase enzymes important in cancer progression.
Nat Commun, 15, 2024
8T0Z
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BU of 8t0z by Molmil
Human liver-type glutaminase (K253A) with L-Gln, filamentous form
Descriptor: GLUTAMINE, Glutaminase liver isoform, mitochondrial
Authors:Feng, S, Aplin, C, Nguyen, T.-T.T, Milano, S.K, Cerione, R.A.
Deposit date:2023-06-01
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Filament formation drives catalysis by glutaminase enzymes important in cancer progression.
Nat Commun, 15, 2024
7YIZ
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BU of 7yiz by Molmil
Crystal structure of anti-mPEG h15-2b Fab W104Y mutant
Descriptor: 15-2b W104Y heavy chain, 15-2b light chain, 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL
Authors:Chang, C.Y, Nguyen, T.M.T, Li, Y.C, Su, Y.C.
Deposit date:2022-07-18
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Crystal structure of anti-mPEG h15-2b Fab W104Y mutant
To Be Published
8PK0
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BU of 8pk0 by Molmil
human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
Descriptor: 16S rRNA + pre-H68-71 segment, 39S ribosomal protein L10, mitochondrial, ...
Authors:Kummer, E, Nguyen, T.G, Ritter, C.
Deposit date:2023-06-23
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome.
Nat Commun, 14, 2023
8QSJ
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BU of 8qsj by Molmil
Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7
Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
Authors:Ritter, C, Nguyen, T.G, Kummer, E.
Deposit date:2023-10-10
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome.
Nat Commun, 14, 2023
8OUE
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BU of 8oue by Molmil
The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in a semi-closed conformation
Descriptor: H/ACA ribonucleoprotein complex subunit 1, H/ACA ribonucleoprotein complex subunit 2, H/ACA ribonucleoprotein complex subunit 3, ...
Authors:Ghanim, G.E, Sekne, Z, van Roon, A.M.M, Balch, S, Nguyen, T.H.D.
Deposit date:2023-04-22
Release date:2024-01-31
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:2.7 angstrom cryo-EM structure of human telomerase H/ACA ribonucleoprotein.
Nat Commun, 15, 2024
8OUF
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The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in an open conformation
Descriptor: H/ACA ribonucleoprotein complex subunit 1, H/ACA ribonucleoprotein complex subunit 2, H/ACA ribonucleoprotein complex subunit 3, ...
Authors:Ghanim, G.E, Sekne, Z, van Roon, A.M.M, Balch, S, Nguyen, T.H.D.
Deposit date:2023-04-22
Release date:2024-01-31
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:2.7 angstrom cryo-EM structure of human telomerase H/ACA ribonucleoprotein.
Nat Commun, 15, 2024
8SZL
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BU of 8szl by Molmil
Human liver-type glutaminase (Apo form)
Descriptor: Glutaminase liver isoform, mitochondrial
Authors:Feng, S, Aplin, C, Nguyen, T.-T.T, Milano, S.K, Cerione, R.A.
Deposit date:2023-05-30
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Filament formation drives catalysis by glutaminase enzymes important in cancer progression.
Nat Commun, 15, 2024
8JCE
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BU of 8jce by Molmil
Cryo-EM Structure of Chikungunya Virus Nonstructural Protein 1 with m7GpppAmU
Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, ...
Authors:Zhang, K, Law, M.C.Y, Nguyen, T.M, Tan, Y.B, Wirawan, M, Law, Y.S, Luo, D.H.
Deposit date:2023-05-11
Release date:2023-11-15
Last modified:2023-12-06
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Chikungunya virus nonstructural protein 1 is a versatile RNA capping and decapping enzyme.
J.Biol.Chem., 299, 2023
7COK
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BU of 7cok by Molmil
Crystal structure of ligand-free form of 5-ketofructose reductase of Gluconobacter sp. strain CHM43
Descriptor: 5-ketofructose reductase
Authors:Noda, S, Hodoya, Y, Nguyen, T.M, Kataoka, N, Adachi, O, Matsutani, M, Matsushita, K, Yakushi, T, Goto, M.
Deposit date:2020-08-04
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The 5-Ketofructose Reductase of Gluconobacter sp. Strain CHM43 Is a Novel Class in the Shikimate Dehydrogenase Family.
J.Bacteriol., 203, 2021
7COL
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BU of 7col by Molmil
Crystal structure of 5-ketofructose reductase complexed with NADPH
Descriptor: 5-ketofructose reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Hodoya, Y, Noda, S, Nguyen, T.M, Kataoka, N, Adachi, O, Matsutani, M, Matsushita, K, Yakushi, T, Goto, M.
Deposit date:2020-08-04
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The 5-Ketofructose Reductase of Gluconobacter sp. Strain CHM43 Is a Novel Class in the Shikimate Dehydrogenase Family.
J.Bacteriol., 203, 2021
5M9F
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BU of 5m9f by Molmil
Structure of the two C-terminal domains of bacteriophage K gp144
Descriptor: ACETATE ION, ORF68, SODIUM ION
Authors:Liu, A, Nguyen, T.H, van Raaij, M.J.
Deposit date:2016-11-01
Release date:2017-12-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of a Putative Receptor-Binding Protein of Staphylococcus Virus K
To Be Published
5OF4
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BU of 5of4 by Molmil
The cryo-EM structure of human TFIIH
Descriptor: General transcription factor IIH subunit 2, General transcription factor IIH subunit 3, General transcription factor IIH subunit 4,p52,General transcription factor IIH subunit 4, ...
Authors:Greber, B.J, Nguyen, T.H.D, Fang, J, Afonine, P.V, Adams, P.D, Nogales, E.
Deposit date:2017-07-10
Release date:2017-09-13
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:The cryo-electron microscopy structure of human transcription factor IIH.
Nature, 549, 2017
6LD8
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BU of 6ld8 by Molmil
Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with aminoacrylate and cysteine
Descriptor: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid, CYSTEINE, Cystathionine gamma-synthase
Authors:Ngo, H.P.T, Nguyen, T.D.Q, Kang, L.W.
Deposit date:2019-11-20
Release date:2020-11-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with aminoacrylate and cysteine
To Be Published
6LGO
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Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with homolanthionine
Descriptor: (2~{S})-2-azanyl-4-[(3~{S})-3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonomethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-4-oxidanylidene-butyl]sulfanyl-butanoic acid, Cystathionine gamma-synthase
Authors:Ngo, H.P.T, Nguyen, T.D.Q, Kang, L.W.
Deposit date:2019-12-05
Release date:2020-12-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with homolanthionine
To Be Published
6LD9
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Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with cystathionine
Descriptor: (2~{S})-4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]sulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid, Cystathionine gamma-synthase
Authors:Ngo, H.P.T, Nguyen, T.D.Q, Kang, L.W.
Deposit date:2019-11-20
Release date:2020-11-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of cystathionine gamma synthase from Xanthomonas oryzae pv. oryzae in complex with cystathionine
To Be Published
6LD7
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Native Structure of cystathionine gamma synthase (XometB) from Xanthomonas oryzae pv. oryzae
Descriptor: Cystathionine gamma-synthase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
Authors:Ngo, H.P.T, Nguyen, T.D.Q, Kang, L.W.
Deposit date:2019-11-20
Release date:2020-11-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Native Structure of cystathionine gamma synthase (XometB) from Xanthomonas oryzae pv. oryzae
To Be Published
7FGI
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BU of 7fgi by Molmil
Cryo-EM Structure of Chikungunya Virus Nonstructural Protein 1 with m7Gppp-AU
Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, ...
Authors:Zhang, K, Law, M.C.Y, Nguyen, T.M, Tan, Y.B, Wirawan, M, Law, Y.S, Luo, D.H.
Deposit date:2021-07-27
Release date:2022-07-27
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Molecular basis of specific viral RNA recognition and 5'-end capping by the Chikungunya virus nsP1.
Cell Rep, 40, 2022
7QXS
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BU of 7qxs by Molmil
Cryo-EM structure of human telomerase-DNA-TPP1-POT1 complex (with POT1 side chains)
Descriptor: Adrenocortical dysplasia homolog (Mouse), isoform CRA_a, Histone H2A, ...
Authors:Sekne, Z, Ghanim, G.E, van Roon, A.M.M, Nguyen, T.H.D.
Deposit date:2022-01-27
Release date:2022-03-02
Last modified:2022-03-23
Method:ELECTRON MICROSCOPY (3.91 Å)
Cite:Structural basis of human telomerase recruitment by TPP1-POT1.
Science, 375, 2022

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