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PDB: 17204 results

8HRJ
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SARS-CoV-2 Delta variant spike protein
Descriptor: Spike glycoprotein
Authors:Xu, J, Cheng, H, Liu, N, Wang, H.W.
Deposit date:2022-12-15
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Self-assembled monolayers guided free-standing atomic-crystal/molecule superstructure
To Be Published
8HRN
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Cryo-EM structure of ACE2
Descriptor: Angiotensin-converting enzyme 2
Authors:Xu, J, Liu, N, Wang, H.W.
Deposit date:2022-12-15
Release date:2023-12-20
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Self-assembled monolayers guided free-standing atomic-crystal/molecule superstructure
To Be Published
8HVB
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BU of 8hvb by Molmil
Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, lacto-N-biose complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Lacto-N-biosidase, beta-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of glycoside hydrolase family 20 lacto-N-biosidase from soil bacterium Streptomyces sp. strain 142
to be published
8HVC
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Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, galacto-N-biose complex 1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of glycoside hydrolase family 20 lacto-N-biosidase from soil bacterium Streptomyces sp. strain 142
to be published
8HVD
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Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, galacto-N-biose complex 2
Descriptor: Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of glycoside hydrolase family 20 lacto-N-biosidase from soil bacterium Streptomyces sp. strain 142
to be published
8HT7
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The N-terminal region of Cdc6 specifically recognizes human DNA G-quadruplex
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*TP*GP*GP*G)-3'), GLN-ALA-GLN-ALA-THR-ILE-SER-PHE-PRO-LYS-ARG-LYS-LEU-SER-TRP
Authors:Liu, C, Zhu, G, Geng, Y, Xu, N.
Deposit date:2022-12-20
Release date:2023-12-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The N-terminal region of Cdc6 specifically recognizes human DNA G-quadruplex.
Int.J.Biol.Macromol., 260, 2024
8HUD
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BU of 8hud by Molmil
Cryo-EM structure of the EvCas9-sgRNA-target DNA ternary complex
Descriptor: CRISPR-associated endonuclease Cas9, Non-target DNA strand, Target DNA strand, ...
Authors:Tang, N, Wu, Z, Gao, Y, Chen, W, Su, M, Wang, Z, Ji, Q.
Deposit date:2022-12-23
Release date:2023-12-27
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Molecular Basis and Genome Editing Applications of a Compact Eubacterium ventriosum CRISPR-Cas9 System.
Acs Synth Biol, 13, 2024
2MWQ
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BU of 2mwq by Molmil
Solution structure of PsbQ from spinacia oleracea
Descriptor: Oxygen-evolving enhancer protein 3, chloroplastic
Authors:Rathner, P, Mueller, N, Wimmer, R, Chandra, K.
Deposit date:2014-11-19
Release date:2015-07-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR and molecular dynamics reveal a persistent alpha helix within the dynamic region of PsbQ from photosystem II of higher plants.
Proteins, 83, 2015
8HYF
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BU of 8hyf by Molmil
Crystal Structure of Banana Lectin In-complex with Fucose at 2.95 A Resolution
Descriptor: CADMIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Rasheed, S, Arif, R, Huda, N, Ahmad, M.S, Mateen, S.M.
Deposit date:2023-01-06
Release date:2024-01-17
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Crystal Structure of Banana Lectin in-Complex with L-Fucose at 2.95 A Resolution
To Be Published
8I7W
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BU of 8i7w by Molmil
Cryo-EM structure of GSK256073 bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Descriptor: 8-chloranyl-3-pentyl-7H-purine-2,6-dione, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Park, J.H, Ishimoto, N, Park, S.Y.
Deposit date:2023-02-02
Release date:2024-02-07
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structural basis for ligand recognition and signaling of hydroxy-carboxylic acid receptor 2.
Nat Commun, 14, 2023
8I7V
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Cryo-EM structure of Acipimox bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Descriptor: 5-methyl-4-oxidanyl-pyrazin-4-ium-2-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Park, J.H, Ishimoto, N, Park, S.Y.
Deposit date:2023-02-02
Release date:2024-02-07
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Structural basis for ligand recognition and signaling of hydroxy-carboxylic acid receptor 2.
Nat Commun, 14, 2023
3D21
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Crystal structure of a poplar wild-type thioredoxin h, PtTrxh4
Descriptor: Thioredoxin H-type
Authors:Koh, C.S, Didierjean, C, Corbier, C, Rouhier, N, Jacquot, J.P, Gelhaye, E.
Deposit date:2008-05-07
Release date:2008-07-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:An Atypical Catalytic Mechanism Involving Three Cysteines of Thioredoxin.
J.Biol.Chem., 283, 2008
8I41
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BU of 8i41 by Molmil
Cryo-EM structure of nanodisc (asolectin) reconstituted GLIC at pH 7.5
Descriptor: DIUNDECYL PHOSPHATIDYL CHOLINE, Proton-gated ion channel
Authors:Bharambe, N, Li, Z, Basak, S.
Deposit date:2023-01-18
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I42
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Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 7.5
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Proton-gated ion channel
Authors:Bharambe, N, Li, Z, Basak, S.
Deposit date:2023-01-18
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I48
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Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 4 in closed state
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CHLORIDE ION, Proton-gated ion channel
Authors:Bharambe, N, Li, Z, Basak, S.
Deposit date:2023-01-18
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8I47
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BU of 8i47 by Molmil
Cryo-EM structure of nanodisc (PE:PS:PC) reconstituted GLIC at pH 5.5
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Proton-gated ion channel
Authors:Bharambe, N, Li, Z, Basak, S.
Deposit date:2023-01-18
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment.
Nat Commun, 15, 2024
8HU1
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BU of 8hu1 by Molmil
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-12-22
Release date:2024-04-03
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine.
Nat.Struct.Mol.Biol., 31, 2024
8HTZ
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BU of 8htz by Molmil
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-12-22
Release date:2024-04-03
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine.
Nat.Struct.Mol.Biol., 31, 2024
8HSP
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BU of 8hsp by Molmil
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-12-20
Release date:2024-04-03
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.32 Å)
Cite:Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine.
Nat.Struct.Mol.Biol., 31, 2024
6JP6
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BU of 6jp6 by Molmil
The X-ray structure of yeast tRNA methyltransferase complex of Trm7 and Trm734 essential for 2'-O-methylation at the first position of anticodon in specific tRNAs
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, tRNA (cytidine(34)/guanosine(34)-2'-O)-methyltransferase, ...
Authors:Hirata, A, Okada, K, Yoshii, K, Shiraisi, H, Saijo, S, Yonezawa, K, Sihimzu, N, Hori, H.
Deposit date:2019-03-26
Release date:2019-10-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.699 Å)
Cite:Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition.
Nucleic Acids Res., 47, 2019
6TRT
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BU of 6trt by Molmil
Chaetomium thermophilum UDP-Glucose Glucosyl Transferase (UGGT) double cysteine mutant S180C/T742C.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, TERBIUM(III) ION, UDP-glucose-glycoprotein glucosyltransferase-like protein, ...
Authors:Roversi, P, Zitzmann, N, Ibba, R, Hensen, M.
Deposit date:2019-12-19
Release date:2020-01-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (4.58 Å)
Cite:Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase.
Structure, 29, 2021
8IP9
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BU of 8ip9 by Molmil
Wheat 40S ribosome in complex with a tRNAi
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S23, 40S ribosomal protein eS1, ...
Authors:Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T.
Deposit date:2023-03-14
Release date:2024-02-21
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1.
Nat.Chem.Biol., 20, 2024
8IPB
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BU of 8ipb by Molmil
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Descriptor: 18S ribosomal RNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 40S ribosomal protein eL8, ...
Authors:Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T.
Deposit date:2023-03-14
Release date:2024-02-21
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1.
Nat.Chem.Biol., 20, 2024
8IYR
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BU of 8iyr by Molmil
The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate
Descriptor: Cellobiose phosphorylase, PHOSPHATE ION
Authors:Iriya, S, Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2023-04-05
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate
To Be Published
3ZNU
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Crystal structure of ClcF in crystal form 2
Descriptor: 1,2-ETHANEDIOL, 5-CHLOROMUCONOLACTONE DEHALOGENASE, CHLORIDE ION, ...
Authors:Roth, C, Groening, J.A.D, Kaschabek, S.R, Schloemann, M, Straeter, N.
Deposit date:2013-02-18
Release date:2013-02-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure and Catalytic Mechanism of Chloromuconolactone Dehalogenase Clcf from Rhodococcus Opacus 1Cp.
Mol.Microbiol., 88, 2013

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