Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 247 results

4Q0P
DownloadVisualize
BU of 4q0p by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
2ZE0
DownloadVisualize
BU of 2ze0 by Molmil
Alpha-glucosidase GSJ
Descriptor: Alpha-glucosidase, CALCIUM ION
Authors:Shirai, T, Hung, V.S, Morinaka, K, Kobayashi, T, Ito, S.
Deposit date:2007-12-04
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria
Proteins, 73, 2008
1YXK
DownloadVisualize
BU of 1yxk by Molmil
Crystal structure of human lectin-like oxidized low-density lipoprotein receptor 1 (LOX-1) disulfide-linked dimer
Descriptor: oxidised low density lipoprotein (lectin-like) receptor 1
Authors:Ohki, I, Ishigaki, T, Oyama, T, Matsunaga, S, Xie, Q, Ohnishi-Kameyama, M, Murata, T, Tsuchiya, D, Machida, S, Morikawa, K, Tate, S.
Deposit date:2005-02-22
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL.
Structure, 13, 2005
2CFM
DownloadVisualize
BU of 2cfm by Molmil
ATP-DEPENDENT DNA LIGASE FROM PYROCOCCUS FURIOSUS
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, THERMOSTABLE DNA LIGASE
Authors:Nishida, H, Ishino, Y, Morikawa, K.
Deposit date:2006-02-22
Release date:2006-07-12
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Closed Structure of an Archaeal DNA Ligase from Pyrococcus Furiosus.
J.Mol.Biol., 360, 2006
1GLN
DownloadVisualize
BU of 1gln by Molmil
ARCHITECTURES OF CLASS-DEFINING AND SPECIFIC DOMAINS OF GLUTAMYL-TRNA SYNTHETASE
Descriptor: GLUTAMYL-TRNA SYNTHETASE
Authors:Nureki, O, Vassylyev, D.G, Katayanagi, K, Shimizu, T, Sekine, S, Kigawa, T, Miyazawa, T, Yokoyama, S, Morikawa, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1994-07-20
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Architectures of class-defining and specific domains of glutamyl-tRNA synthetase.
Science, 267, 1995
2DI4
DownloadVisualize
BU of 2di4 by Molmil
Crystal structure of the FtsH protease domain
Descriptor: Cell division protein ftsH homolog, MERCURY (II) ION
Authors:Suno, R, Niwa, H, Tsuchiya, D, Zhang, X, Yoshida, M, Morikawa, K.
Deposit date:2006-03-28
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structure of the Whole Cytosolic Region of ATP-Dependent Protease FtsH
Mol.Cell, 22, 2006
2D3T
DownloadVisualize
BU of 2d3t by Molmil
Fatty Acid beta-oxidation multienzyme complex from Pseudomonas Fragi, Form V
Descriptor: 3-ketoacyl-CoA thiolase, ACETYL COENZYME *A, Fatty oxidation complex alpha subunit, ...
Authors:Tsuchiya, D, Shimizu, N, Ishikawa, M, Suzuki, Y, Morikawa, K.
Deposit date:2005-10-01
Release date:2006-02-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Ligand-Induced Domain Rearrangement of Fatty Acid beta-Oxidation Multienzyme Complex
Structure, 14, 2006
3AN3
DownloadVisualize
BU of 3an3 by Molmil
Human PPAR gamma ligand binding domain in complex with a gamma selective agonist MO3S
Descriptor: (2S)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Oyama, T, Ohashi, M, Waku, T, Miyachi, H, Morikawa, K.
Deposit date:2010-08-30
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPAR gamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship
J.Med.Chem., 54, 2011
3AN4
DownloadVisualize
BU of 3an4 by Molmil
Human PPAR gamma ligand binding domain in complex with a gamma selective agonist MO4R
Descriptor: (2R)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:Oyama, T, Ohashi, M, Waku, T, Miyachi, H, Morikawa, K.
Deposit date:2010-08-30
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPAR gamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship
J.Med.Chem., 54, 2011
1VSR
DownloadVisualize
BU of 1vsr by Molmil
VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI
Descriptor: PROTEIN (VSR ENDONUCLEASE), ZINC ION
Authors:Tsutakawa, S.E, Muto, T, Jingami, H, Kunishima, N, Ariyoshi, M, Kohda, D, Nakagawa, M, Morikawa, K.
Deposit date:1999-02-13
Release date:1999-10-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic and functional studies of very short patch repair endonuclease.
Mol.Cell, 3, 1999
1WXL
DownloadVisualize
BU of 1wxl by Molmil
Solution Structure of the HMG-box domain in the SSRP1 subunit of FACT
Descriptor: Single-strand recognition protein
Authors:Kasai, N, Tsunaka, Y, Ohki, I, Hirose, S, Morikawa, K, Tate, S.
Deposit date:2005-01-26
Release date:2005-08-16
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the HMG-box domain in the SSRP1 subunit of FACT
J.Biomol.Nmr, 32, 2005
2YY2
DownloadVisualize
BU of 2yy2 by Molmil
Crystal structure of the human Phosphodiesterase 9A catalytic domain complexed with IBMX
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, MAGNESIUM ION, ...
Authors:Handa, N, Shirouzu, M, Terada, T, Omori, K, Kotera, J, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the human Phosphodiesterase 9A catalytic domain
To be Published
2E4Z
DownloadVisualize
BU of 2e4z by Molmil
Crystal structure of the ligand-binding region of the group III metabotropic glutamate receptor
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Metabotropic glutamate receptor 7
Authors:Muto, T, Tsuchiya, D, Morikawa, K, Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
2EGK
DownloadVisualize
BU of 2egk by Molmil
Crystal Structure of Tamalin PDZ-Intrinsic Ligand Fusion Protein
Descriptor: General receptor for phosphoinositides 1-associated scaffold protein, PHOSPHATE ION
Authors:Sugi, T, Oyama, T, Muto, T, Nakanishi, S, Morikawa, K, Jingami, H.
Deposit date:2007-03-01
Release date:2007-05-08
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structures of autoinhibitory PDZ domain of Tamalin: implications for metabotropic glutamate receptor trafficking regulation
Embo J., 26, 2007
2E4W
DownloadVisualize
BU of 2e4w by Molmil
Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with 1S,3S-ACPD
Descriptor: (1S,3S)-1-aminocyclopentane-1,3-dicarboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 3
Authors:Muto, T, Tsuchiya, D, Morikawa, K, Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E4V
DownloadVisualize
BU of 2e4v by Molmil
Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with DCG-IV
Descriptor: (1R,2R)-3-[(S)-amino(carboxy)methyl]cyclopropane-1,2-dicarboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 3
Authors:Muto, T, Tsuchiya, D, Morikawa, K, Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
2EGO
DownloadVisualize
BU of 2ego by Molmil
Crystal Structure of Tamalin PDZ Domain
Descriptor: General receptor for phosphoinositides 1-associated scaffold protein
Authors:Sugi, T, Oyama, T, Muto, T, Nakanishi, S, Morikawa, K, Jingami, H.
Deposit date:2007-03-01
Release date:2007-05-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of autoinhibitory PDZ domain of Tamalin: implications for metabotropic glutamate receptor trafficking regulation
Embo J., 26, 2007
4Z2N
DownloadVisualize
BU of 4z2n by Molmil
Crystal structure of human FACT SPT16 middle domain
Descriptor: FACT complex subunit SPT16
Authors:Tsunaka, Y, Fujiwara, Y, Oyama, T, Hirose, S, Morikawa, K.
Deposit date:2015-03-30
Release date:2016-03-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.923 Å)
Cite:Integrated molecular mechanism directing nucleosome reorganization by human FACT.
Genes Dev., 30, 2016
4Z2M
DownloadVisualize
BU of 4z2m by Molmil
Crystal structure of human SPT16 Mid-AID/H3-H4 tetramer FACT Histone complex
Descriptor: FACT complex subunit SPT16, Histone H3.1, Histone H4
Authors:Tsunaka, Y, Fujiwara, Y, Oyama, T, Hirose, S, Morikawa, K.
Deposit date:2015-03-30
Release date:2016-03-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.981 Å)
Cite:Integrated molecular mechanism directing nucleosome reorganization by human FACT.
Genes Dev., 30, 2016
2ZMF
DownloadVisualize
BU of 2zmf by Molmil
Crystal structure of the C-terminal GAF domain of human phosphodiesterase 10A
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A
Authors:Handa, N, Kishishita, S, Mizohata, E, Omori, K, Kotera, J, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-04-17
Release date:2008-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of the GAF-B Domain from Human Phosphodiesterase 10A Complexed with Its Ligand, cAMP
J.Biol.Chem., 283, 2008
2ZVT
DownloadVisualize
BU of 2zvt by Molmil
Cys285Ser mutant PPARgamma ligand-binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2
Descriptor: (5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid, Peroxisome proliferator-activated receptor gamma
Authors:Waku, T, Oyama, T, Shiraki, T, Morikawa, K.
Deposit date:2008-11-19
Release date:2009-10-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure of mutant PPARgamma LBD complexed with 15d-PGJ2: novel modulation mechanism of PPARgamma/RXRalpha function by covalently bound ligands
Febs Lett., 583, 2009
2EGN
DownloadVisualize
BU of 2egn by Molmil
Crystal Structure of Tamalin PDZ Domain in Complex with mGluR5 C-terminal Peptide
Descriptor: General receptor for phosphoinositides 1-associated scaffold protein, mGluR5 C-terminal peptide
Authors:Sugi, T, Oyama, T, Muto, T, Nakanishi, S, Morikawa, K, Jingami, H.
Deposit date:2007-03-01
Release date:2007-05-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of autoinhibitory PDZ domain of Tamalin: implications for metabotropic glutamate receptor trafficking regulation
Embo J., 26, 2007
2E4X
DownloadVisualize
BU of 2e4x by Molmil
Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with 1S,3R-ACPD
Descriptor: (1S,3R)-1-AMINOCYCLOPENTANE-1,3-DICARBOXYLIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 3
Authors:Muto, T, Tsuchiya, D, Morikawa, K, Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E4U
DownloadVisualize
BU of 2e4u by Molmil
Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with L-glutamate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, Metabotropic glutamate receptor 3
Authors:Muto, T, Tsuchiya, D, Morikawa, K, Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007
2E4Y
DownloadVisualize
BU of 2e4y by Molmil
Crystal structure of the extracellular region of the group II metabotropic glutamate receptor complexed with 2R,4R-APDC
Descriptor: (2R,4R)-4-aminopyrrolidine-2,4-dicarboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 3
Authors:Muto, T, Tsuchiya, D, Morikawa, K, Jingami, H.
Deposit date:2006-12-17
Release date:2007-02-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structures of the extracellular regions of the group II/III metabotropic glutamate receptors
Proc.Natl.Acad.Sci.Usa, 104, 2007

221716

数据于2024-06-26公开中

PDB statisticsPDBj update infoContact PDBjnumon