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PDB: 509 results

8OWV
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BU of 8owv by Molmil
H6 and F2 nanobodies bound to SARS-CoV-2 spike RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, F2, GLYCEROL, ...
Authors:Mikolajek, H, Naismith, J.H, Owens, R.J.
Deposit date:2023-04-28
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Trimeric nanobodies potently neutralize Omicron variants of SARS-CoV-2
To Be Published
8OWT
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BU of 8owt by Molmil
SARS-CoV-2 spike RBD with A8 and H3 nanobodies bound
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody A8, ...
Authors:Mikolajek, H, Naismith, J.H, Owens, R.J.
Deposit date:2023-04-28
Release date:2024-05-08
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Trimeric nanobodies potently neutralize Omicron variants of SARS-CoV-2
To Be Published
4IHK
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BU of 4ihk by Molmil
Crystal structure of the Collagen VI alpha3 N5 domain R1061Q
Descriptor: Collagen alpha3(VI)
Authors:Mikolajek, H, Becker, A.K.A, Paulsson, M, Wagener, R, Werner, J.M.
Deposit date:2012-12-19
Release date:2013-12-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A structure of a collagen VI VWA domain displays N and C termini at opposite sides of the protein
Structure, 22, 2014
4IGI
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BU of 4igi by Molmil
Crystal structure of the Collagen VI alpha3 N5 domain
Descriptor: Collagen alpha3(VI)
Authors:Mikolajek, H, Becker, A.K.A, Paulsson, M, Wagener, R, Werner, J.M.
Deposit date:2012-12-17
Release date:2013-12-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:A structure of a collagen VI VWA domain displays N and C termini at opposite sides of the protein
Structure, 22, 2014
3L2Y
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BU of 3l2y by Molmil
The structure of C-reactive protein bound to phosphoethanolamine
Descriptor: C-reactive protein, CALCIUM ION, PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER
Authors:Mikolajek, H, Kolstoe, S.E, Wood, S.P, Pepys, M.B.
Deposit date:2009-12-15
Release date:2010-12-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of ligand specificity in the human pentraxins, C-reactive protein and serum amyloid P component.
J.Mol.Recognit., 24, 2011
3KQR
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BU of 3kqr by Molmil
The structure of serum amyloid p component bound to phosphoethanolamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, ...
Authors:Mikolajek, H, Kolstoe, S.E, Wood, S.P, Pepys, M.B.
Deposit date:2009-11-17
Release date:2010-12-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of ligand specificity in the human pentraxins, C-reactive protein and serum amyloid P component.
J.Mol.Recognit., 24, 2011
5OQH
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BU of 5oqh by Molmil
Crystal Structure of a disulfide trapped single chain trimer composed of the MHC I heavy chain H-2Kb Y84C K66A mutant, beta-2microglobulin, and ovalbumin-derived peptide
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M, Beton, M.E.
Deposit date:2017-08-11
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
5OQI
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BU of 5oqi by Molmil
Crystal Structure of a disulfide trapped single chain trimer composed of the MHC I heavy chain H-2Kb Y84C E63A mutant, beta-2microglobulin, and ovalbumin-derived peptide
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M, Beton, M.E.
Deposit date:2017-08-11
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
5OQF
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BU of 5oqf by Molmil
Crystal structure of a single chain trimer composed of the MHC 1 heavy chain H2-Kb WT, beta-2microglobulin, and ovalbumin derived peptide
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M.
Deposit date:2017-08-11
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
5OQG
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BU of 5oqg by Molmil
Crystal structure of a single chain trimer composed of the MHC I heavy chain H-2Kb W167A, beta-2microglobulin, and and ovalbumin-derived peptide.
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M.
Deposit date:2017-08-11
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
7ZCK
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BU of 7zck by Molmil
Room temperature crystal structure of PhnD from Synechococcus MITS9220 in complex with phosphate
Descriptor: CHLORIDE ION, PHOSPHATE ION, Phosphonate ABC type transporter/ substrate binding component
Authors:Mikolajek, H, Shah, B.S, Paulsen, I.T, Sandy, J, Sanchez-Weatherby, J.
Deposit date:2022-03-28
Release date:2022-05-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.
Iucrj, 10, 2023
7Z1A
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BU of 7z1a by Molmil
Nanobody H11 and F2 bound to RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, F2 Nanobody, H11 Nanobody, ...
Authors:Mikolajek, H, Naismith, J.H.
Deposit date:2022-02-24
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7Z1D
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BU of 7z1d by Molmil
Nanobody H11-H6 bound to RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, H11-H6 nanobody, ...
Authors:Mikolajek, H, Naismith, J.H.
Deposit date:2022-02-24
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7Z1C
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BU of 7z1c by Molmil
Nanobody H11-B5 and H11-F2 bound to RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Nanobody B5, ...
Authors:Mikolajek, H, Naismith, J.H.
Deposit date:2022-02-24
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7Z1B
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BU of 7z1b by Molmil
Nanobody H11-A10 and F2 bound to RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanobody A10, Nanobody F2, ...
Authors:Mikolajek, H, Naismith, J.H.
Deposit date:2022-02-24
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7Z1E
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BU of 7z1e by Molmil
Nanobody H11-H4 Q98R H100E bound to RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, H11-H4 Q98R H100E, ...
Authors:Mikolajek, H, Naismith, J.H.
Deposit date:2022-02-24
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Correlation between the binding affinity and the conformational entropy of nanobody SARS-CoV-2 spike protein complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
6ZH9
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BU of 6zh9 by Molmil
Ternary complex CR3022 H11-H4 and RBD (SARS-CoV-2)
Descriptor: CR3022 Light chain, CR3022 heavy, Nanobody H11-H4, ...
Authors:Naismith, J.H, Mikolajek, H, Le Bas, A.
Deposit date:2020-06-21
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Neutralizing nanobodies bind SARS-CoV-2 spike RBD and block interaction with ACE2.
Nat.Struct.Mol.Biol., 27, 2020
8ANX
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BU of 8anx by Molmil
E329A Mutant Thermogutta terrifontis endoglucanase catalytic domain with C-linker from glycoside hydrolase family 5 (TtEnd5A-CDC-E329A)
Descriptor: Endoglucanase
Authors:Hussain, N, Mikolajek, H, Naismith, J.H.
Deposit date:2022-08-06
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:TtEnd5A-CDC-E329A
To Be Published
8BS8
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BU of 8bs8 by Molmil
Bovine naive ultralong antibody AbD08 collected at 100K
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Heavy chain, Light chain
Authors:Clarke, J.D, Douangamath, A, Mikolajek, H, Stuart, D.I, Owens, R.J.
Deposit date:2022-11-24
Release date:2023-05-24
Last modified:2023-07-19
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.
Iucrj, 10, 2023
8CIF
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BU of 8cif by Molmil
Bovine naive ultralong antibody AbD08 collected at 293K
Descriptor: Heavy chain, Light chain
Authors:Clarke, J.D, Mikolajek, H, Stuart, D.I, Owens, R.J.
Deposit date:2023-02-09
Release date:2023-05-24
Last modified:2023-07-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.
Iucrj, 10, 2023
2IZP
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BU of 2izp by Molmil
BipD - an invasion protein associated with the type-III secretion system of Burkholderia pseudomallei.
Descriptor: PUTATIVE MEMBRANE ANTIGEN
Authors:Erskine, P.T, Knight, M.J, Ruaux, A, Mikolajek, H, Wong-Fat-Sang, N, Withers, J, Gill, R, Wood, S.P, Wood, M, Fox, G.C, Cooper, J.B.
Deposit date:2006-07-25
Release date:2006-09-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:High Resolution Structure of Bipd: An Invasion Protein Associated with the Type III Secretion System of Burkholderia Pseudomallei.
J.Mol.Biol., 363, 2006
7UG8
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BU of 7ug8 by Molmil
Crystal structure of a solute receptor from Synechococcus CC9311 in complex with alpha-ketovaleric and calcium
Descriptor: 1,2-ETHANEDIOL, 2-oxopentanoic acid, CALCIUM ION, ...
Authors:Shah, B.S, Mikolajek, H, Orr, C.M, Mykhaylyk, V, Owens, R.J, Paulsen, I.T.
Deposit date:2022-03-24
Release date:2023-04-19
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Crystal structure of a solute receptor from Synechococcus CC9311 in complex with alpha-ketovaleric and calcium
To Be Published
6RZP
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BU of 6rzp by Molmil
Multicrystal structure of Proteinase K at room temperature using a multilayer monochromator.
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Sandy, J, Sandy, E, Sanchez-Weatherby, J, Mikolajek, H.
Deposit date:2019-06-13
Release date:2019-07-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein-to-structure pipeline for ambient-temperature crystallography at VMXi
Iucrj, 2023
6SEL
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BU of 6sel by Molmil
Multicrystal structure of Thermolysin at room temperature using a multilayer monochromator.
Descriptor: CALCIUM ION, ISOLEUCINE, LYSINE, ...
Authors:Sandy, J, Sanchez-Weatherby, J, Mikolajek, H.
Deposit date:2019-07-30
Release date:2019-08-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein-to-structure pipeline for ambient-temperature crystallography at VMXi
Iucrj, 2023
6SVA
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BU of 6sva by Molmil
Multicrystal structure of equine Haemoglobin at room temperature using a multilayer monochromator.
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sandy, J, Sanchez-Weatherby, J, Mikolajek, H, Lewis, G, Angus, R.
Deposit date:2019-09-18
Release date:2019-11-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Protein-to-structure pipeline for ambient-temperature crystallography at VMXi
Iucrj, 2023

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