4XIG
| Crystal structure of bacterial alginate ABC transporter determined through humid air and glue-coating method | Descriptor: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgM1, AlgM2, ... | Authors: | Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W. | Deposit date: | 2015-01-07 | Release date: | 2016-01-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (3.402 Å) | Cite: | A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate. J.Biol.Chem., 292, 2017
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5HXI
| 2-Methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, 5HN bound | Descriptor: | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, 5-hydroxypyridine-3-carboxylic acid, BETA-MERCAPTOETHANOL, ... | Authors: | Kobayashi, J, Mikami, B. | Deposit date: | 2016-01-30 | Release date: | 2016-10-12 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Role of the Tyr270 residue in 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase from Mesorhizobium loti J. Biosci. Bioeng., 123, 2017
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6A4U
| The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, Ferritin, ... | Authors: | Masuda, T, Mikami, B, Zang, J, Zhao, G. | Deposit date: | 2018-06-21 | Release date: | 2018-08-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.16 Å) | Cite: | The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin Protein Sci., 27, 2018
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1FXZ
| CRYSTAL STRUCTURE OF SOYBEAN PROGLYCININ A1AB1B HOMOTRIMER | Descriptor: | GLYCININ G1 | Authors: | Adachi, M, Takenaka, Y, Gidamis, A.B, Mikami, B, Utsumi, S. | Deposit date: | 2000-09-28 | Release date: | 2001-10-03 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of soybean proglycinin A1aB1b homotrimer. J.Mol.Biol., 305, 2001
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4XVB
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8Y1M
| Xylanase R from Bacillus sp. TAR-1 complexed with xylobiose. | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | Authors: | Nakamura, T, Kuwata, K, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K. | Deposit date: | 2024-01-25 | Release date: | 2024-05-22 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR. Sci Rep, 14, 2024
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6M1W
| Structure of the 2-Aminoisobutyric acid Monooxygenase Hydroxylase | Descriptor: | Amidohydrolase, CHLORIDE ION, FE (III) ION, ... | Authors: | Hibi, M, Mikami, B, Ogawa, J. | Deposit date: | 2020-02-26 | Release date: | 2021-01-06 | Last modified: | 2021-01-27 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes. Commun Biol, 4, 2021
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6M2I
| Structure of the 2-Aminoisobutyric acid Monooxygenase Hydroxylase | Descriptor: | 1,2-ETHANEDIOL, Amidohydrolase, FE (III) ION, ... | Authors: | Hibi, M, Mikami, B, Ogawa, J. | Deposit date: | 2020-02-27 | Release date: | 2021-01-06 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes. Commun Biol, 4, 2021
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4Z9Y
| Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Pectobacterium carotovorum | Descriptor: | 2-deoxy-D-gluconate 3-dehydrogenase, SULFATE ION | Authors: | Takase, R, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | Deposit date: | 2015-04-13 | Release date: | 2015-04-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.63 Å) | Cite: | Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity Proteins, 84, 2016
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4ZA2
| Crystal structure of Pectobacterium carotovorum 2-keto-3-deoxy-D-gluconate dehydrogenase complexed with NAD+ | Descriptor: | 2-deoxy-D-gluconate 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Takase, R, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | Deposit date: | 2015-04-13 | Release date: | 2015-04-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity Proteins, 84, 2016
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2RGK
| Functional annotation of Escherichia coli yihS-encoded protein | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Uncharacterized sugar isomerase yihS | Authors: | Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-03 | Release date: | 2008-08-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase J.Mol.Biol., 377, 2008
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5SW1
| Thaumatin Structure at pH 6.0 | Descriptor: | (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID, Thaumatin I | Authors: | Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B. | Deposit date: | 2016-08-08 | Release date: | 2017-08-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Thaumatin Structure at pH 6.0 To Be Published
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5SW2
| Thaumatin Structure at pH 6.0, orthorhombic type1 | Descriptor: | GLYCEROL, Thaumatin I | Authors: | Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B. | Deposit date: | 2016-08-08 | Release date: | 2017-08-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | Thaumatin Structure at pH 6.0, orthorhombic type1 To Be Published
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5SW0
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5CL2
| Crystal structure of Spo0M, sporulation control protein, from Bacillus subtilis. | Descriptor: | SODIUM ION, Sporulation-control protein spo0M | Authors: | Sonoda, Y, Mizutani, K, Mikami, B. | Deposit date: | 2015-07-16 | Release date: | 2015-12-16 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structure of Spo0M, a sporulation-control protein from Bacillus subtilis. Acta Crystallogr.,Sect.F, 71, 2015
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1CQY
| STARCH BINDING DOMAIN OF BACILLUS CEREUS BETA-AMYLASE | Descriptor: | BETA-AMYLASE | Authors: | Yoon, H.J, Hirata, A, Adachi, M, Sekine, A, Utsumi, S, Mikami, B. | Deposit date: | 1999-08-12 | Release date: | 1999-08-20 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structure of Separated Starch-Binding Domain of Bacillus cereus B-amylase To be Published
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8XY0
| Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR | Descriptor: | CALCIUM ION, DI(HYDROXYETHYL)ETHER, Endo-1,4-beta-xylanase A | Authors: | Nakamura, T, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K. | Deposit date: | 2024-01-19 | Release date: | 2024-05-22 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR. Sci Rep, 14, 2024
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8YVW
| Crystal structure of D12N mutant of L-azetidine-2-carboxylate hydrolase | Descriptor: | (S)-2-haloacid dehalogenase, FORMIC ACID, IMIDAZOLE, ... | Authors: | Toyoda, M, Mizutani, K, Mikami, B, Wackett, L.P, Esaki, N, Kurihara, T. | Deposit date: | 2024-03-29 | Release date: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.19 Å) | Cite: | Research for the crystal structure of L-azetidine-2-carboxylate hydrolase To Be Published
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8X3H
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8YWO
| Crystal structure of L-azetidine-2-carboxylate hydrolase soaked in (S)-azetidine-2-carboxylic acid | Descriptor: | (2S)-azetidine-2-carboxylic acid, (S)-2-haloacid dehalogenase | Authors: | Toyoda, M, Mizutani, K, Mikami, B, Wackett, L.P, Esaki, N, Kurihara, T. | Deposit date: | 2024-03-31 | Release date: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | Research for the crystal structure of L-azetidine-2-carboxylate hydrolase To Be Published
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6L8S
| High resolution crystal structure of crustacean hemocyanin. | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... | Authors: | Masuda, T, Mikami, B, Baba, S. | Deposit date: | 2019-11-07 | Release date: | 2020-05-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | The high-resolution crystal structure of lobster hemocyanin shows its enzymatic capability as a phenoloxidase. Arch.Biochem.Biophys., 688, 2020
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1FP3
| CRYSTAL STRUCTURE OF N-ACYL-D-GLUCOSAMINE 2-EPIMERASE FROM PORCINE KIDNEY | Descriptor: | N-ACYL-D-GLUCOSAMINE 2-EPIMERASE | Authors: | Itoh, T, Mikami, B, Maru, I, Ohta, Y, Hashimoto, W, Murata, K. | Deposit date: | 2000-08-30 | Release date: | 2000-11-22 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of N-acyl-D-glucosamine 2-epimerase from porcine kidney at 2.0 A resolution. J.Mol.Biol., 303, 2000
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3Q9T
| Crystal structure analysis of formate oxidase | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, ... | Authors: | Doubayashi, D, Ootake, T, Maeda, Y, Oki, M, Tokunaga, Y, Sakurai, A, Nagaosa, Y, Mikami, B, Uchida, H. | Deposit date: | 2011-01-09 | Release date: | 2011-09-21 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.24 Å) | Cite: | Formate oxidase, an enzyme of the glucose-methanol-choline oxidoreductase family, has a His-Arg pair and 8-formyl-FAD at the catalytic site. Biosci.Biotechnol.Biochem., 75, 2011
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3KSC
| Crystal structure of pea prolegumin, an 11S seed globulin from Pisum sativum L. | Descriptor: | GLYCEROL, LegA class, SULFATE ION | Authors: | Tandang-Silvas, M.R.G, Fukuda, T, Fukuda, C, Prak, K, Cabanos, C, Kimura, A, Itoh, T, Mikami, B, Maruyama, N, Utsumi, S. | Deposit date: | 2009-11-21 | Release date: | 2010-04-21 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.606 Å) | Cite: | Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta, 1804, 2010
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1OVT
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