Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Pectobacterium carotovorum

Summary for 4Z9Y

Related4Z9X 4ZA2
Descriptor2-deoxy-D-gluconate 3-dehydrogenase, SULFATE ION (3 entities in total)
Functional Keywordspectin metabolism, short-chain dehydrogenase/reductase, rossmann fold, dual coenzyme specificity, oxidoreductase
Biological sourcePectobacterium carotovorum subsp. carotovorum
Total number of polymer chains4
Total molecular weight109553.13
Takase, R.,Maruyama, Y.,Oiki, S.,Mikami, B.,Murata, K.,Hashimoto, W. (deposition date: 2015-04-13, release date: 2015-04-29, Last modification date: 2020-02-19)
Primary citation
Takase, R.,Maruyama, Y.,Oiki, S.,Mikami, B.,Murata, K.,Hashimoto, W.
Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Proteins, 84:934-947, 2016
PubMed: 27028675 (PDB entries with the same primary citation)
DOI: 10.1002/prot.25042
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.208100 4.9%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-28