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PDB: 152 件

2ATE
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BU of 2ate by Molmil
Structure of the complex of PurE with NitroAIR
分子名称: ((2R,3S,4R,5R)-5-(5-AMINO-4-NITRO-1H-IMIDAZOL-1-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL)METHYL DIHYDROGEN PHOSPHATE, Phosphoribosylaminoimidazole carboxylase catalytic subunit
著者Kappock, T.J, Mathews, I.I, Zaugg, J.B, Peng, P, Hoskins, A.A, Okamoto, A, Ealick, S.E, Stubbe, J.
登録日2005-08-24
公開日2006-08-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献N5-CAIR mutase: role of a CO2 binding site and substrate movement in catalysis.
Biochemistry, 46, 2007
4D8P
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BU of 4d8p by Molmil
Structural and functional studies of the trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) molecule
分子名称: GLYCEROL, HLA-DQA1 protein, Peptide from Gamma-gliadin,HLA class II histocompatibility antigen, ...
著者Kim, C.-Y, Hotta, K, Mathews, I.I, Chen, X.
登録日2012-01-11
公開日2012-03-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural and functional studies of trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) protein molecule
J.Biol.Chem., 287, 2012
9BC4
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Transglutaminase 2 - Intermediate State
分子名称: CALCIUM ION, GLYCEROL, HB-225 (gluten peptidomimetic TG2 inhibitor), ...
著者Sewa, A.S, Mathews, I.I, Khosla, C.
登録日2024-04-07
公開日2024-07-03
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural and mechanistic analysis of Ca 2+ -dependent regulation of transglutaminase 2 activity using a Ca 2+ -bound intermediate state.
Proc.Natl.Acad.Sci.USA, 121, 2024
6APM
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BU of 6apm by Molmil
Hen egg-white lysozyme (WT), solved with serial millisecond crystallography using synchrotron radiation
分子名称: Lysozyme C, SODIUM ION
著者Lyubimov, A.Y, Mathews, I.I, Uervivojnangkoorn, M, Soltis, S.M, Cohen, A.E.
登録日2017-08-17
公開日2018-04-04
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.
Biochemistry, 56, 2017
6APK
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BU of 6apk by Molmil
Trans-acting transferase from Disorazole synthase solved by serial femtosecond XFEL crystallography
分子名称: DisD protein
著者Lyubimov, A.Y, Mathews, I.I, Uervivojnangkoorn, M, Khosla, C, Soltis, S.M, Cohen, A.E.
登録日2017-08-17
公開日2018-04-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.
Biochemistry, 56, 2017
2BKL
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BU of 2bkl by Molmil
Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, N-[(BENZYLOXY)CARBONYL]-L-ALANYL-L-PROLINE, PROLYL ENDOPEPTIDASE, ...
著者Khosla, C, Shan, L, Mathews, I.I.
登録日2005-02-16
公開日2005-03-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Interdomain Dynamics in Catalysis and Specificity
Proc.Natl.Acad.Sci.USA, 102, 2005
4RA0
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BU of 4ra0 by Molmil
An engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
著者Kariolis, M.S, Kapur, S, Mathews, I.I, Cochran, J.R.
登録日2014-09-09
公開日2014-09-24
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.07 Å)
主引用文献An engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis.
Nat.Chem.Biol., 10, 2014
6C9U
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Crystal structure of [KS3][AT3] didomain from module 3 of 6-deoxyerthronolide B synthase in complex with antibody fragment (Fab)
分子名称: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4, Heavy chain of Fab 1B2, ...
著者Deis, L.N, Li, X, Mathews, I.I, Khosla, C.
登録日2018-01-28
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structure-Function Analysis of the Extended Conformation of a Polyketide Synthase Module.
J. Am. Chem. Soc., 140, 2018
4RDS
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BU of 4rds by Molmil
Lysozyme crystallized with red food coloring dye
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
著者Irimpan, E.M, Mathews, I.I.
登録日2014-09-19
公開日2015-01-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Lysozyme crystallized with red food coloring dye.
To be Published
7RRH
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BU of 7rrh by Molmil
Crystal structure of fast switching R66M/M159T mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.747 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7RRJ
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Crystal structure of fast switching M159Q mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7RRI
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BU of 7rri by Molmil
Crystal structure of fast switching S142A/M159T mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.643 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
7RRK
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BU of 7rrk by Molmil
Crystal structure of fast switching M159E mutant of fluorescent protein Dronpa (Dronpa2)
分子名称: Fluorescent protein Dronpa
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2021-08-09
公開日2021-10-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.929 Å)
主引用文献Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme.
J.Am.Chem.Soc., 144, 2022
8DDZ
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BU of 8ddz by Molmil
TEM-1 beta-lactamase A237Y
分子名称: Beta-lactamase TEM
著者Ji, Z, Boxer, S.G, Mathews, I.I.
登録日2022-06-19
公開日2022-09-07
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of beta-Lactamases.
J.Am.Chem.Soc., 144, 2022
8DE1
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BU of 8de1 by Molmil
TEM-1 beta-lactamase A237Y mutant covalently bound to avibactam
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase TEM
著者Ji, Z, Boxer, S.G, Mathews, I.I.
登録日2022-06-19
公開日2022-09-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of beta-Lactamases.
J.Am.Chem.Soc., 144, 2022
8DE2
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BU of 8de2 by Molmil
TEM-1 beta-lactamase A237Y mutant covalently bound to avibactam, a room temperature structure
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase TEM
著者Ji, Z, Boxer, S.G, Mathews, I.I.
登録日2022-06-19
公開日2022-09-07
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of beta-Lactamases.
J.Am.Chem.Soc., 144, 2022
8DE0
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BU of 8de0 by Molmil
TEM-1 beta-lactamase covalently bound to avibactam
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase TEM
著者Ji, Z, Boxer, S.G, Mathews, I.I.
登録日2022-06-19
公開日2022-09-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of beta-Lactamases.
J.Am.Chem.Soc., 144, 2022
8DGG
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BU of 8dgg by Molmil
Structure of glycosylated LAG-3 homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Silberstein, J.L, Mathews, I.I, Frank, J.A, Chan, K.-W, Fernandez, D, Du, J, Wang, J, Kong, X.-P, Cochran, J.R.
登録日2022-06-23
公開日2022-08-17
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (3.78 Å)
主引用文献Structural insights reveal interplay between LAG-3 homodimerization, ligand binding, and function.
Proc.Natl.Acad.Sci.USA, 121, 2024
3HAT
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BU of 3hat by Molmil
ACTIVE SITE MIMETIC INHIBITION OF THROMBIN
分子名称: FPAM (FIBRINOPEPTIDE A MIMIC), Hirudin variant-2, Thrombin heavy chain, ...
著者Tulinsky, A, Mathews, I.I.
登録日1994-10-16
公開日1995-02-27
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Active-site mimetic inhibition of thrombin.
Acta Crystallogr.,Sect.D, 51, 1995
1YR2
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BU of 1yr2 by Molmil
Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity
分子名称: GLYCEROL, prolyl oligopeptidase
著者Shan, L, Mathews, I.I, Khosla, C.
登録日2005-02-02
公開日2005-03-15
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Interdomain Dynamics in Catalysis and Specificity
Proc.Natl.Acad.Sci.USA, 102, 2005
6V2J
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BU of 6v2j by Molmil
Crystal structure of ClC-ec1 triple mutant (E113Q, E148Q, E203Q)
分子名称: CHLORIDE ION, H(+)/Cl(-) exchange transporter ClcA
著者Maduke, M, Mathews, I.I, Chavan, T.S.
登録日2019-11-24
公開日2020-05-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献A CLC-ec1 mutant reveals global conformational change and suggests a unifying mechanism for the CLC Cl - /H + transport cycle.
Elife, 9, 2020
6W7S
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BU of 6w7s by Molmil
Ketoreductase from module 1 of the 6-deoxyerythronolide B synthase (KR1) in complex with antibody fragment (Fab) 2G10
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2G10 (Fab heavy chain), 2G10 (Fab light chain), ...
著者Cogan, D.P, Mathews, I.I, Khosla, C.
登録日2020-03-19
公開日2020-09-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Antibody Probes of Module 1 of the 6-Deoxyerythronolide B Synthase Reveal an Extended Conformation During Ketoreduction.
J.Am.Chem.Soc., 142, 2020
6WH9
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Ketoreductase from module 1 of the 6-deoxyerythronolide B synthase (KR1) in complex with antibody fragment (Fab) 1D10
分子名称: 1D10 (Fab heavy chain), 1D10 (Fab light chain), KR1, ...
著者Cogan, D.P, Mathews, I.I, Khosla, C.
登録日2020-04-07
公開日2020-09-09
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Antibody Probes of Module 1 of the 6-Deoxyerythronolide B Synthase Reveal an Extended Conformation During Ketoreduction.
J.Am.Chem.Soc., 142, 2020
7MHA
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BU of 7mha by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; W252V mutant
分子名称: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
著者Boxer, S.G, Mathews, I.I, Weaver, J.B.
登録日2021-04-14
公開日2022-04-27
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Photosynthetic reaction center variants made via genetic code expansion indicate tyrosine at M210 tunes the mechanism for primary electron transfer
Thesis Ph.D. Stanford University, 2022
6OFN
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Crystal structure of green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51)
分子名称: Green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51)
著者Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
登録日2019-03-31
公開日2019-07-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.649 Å)
主引用文献Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019

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件を2024-10-30に公開中

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