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PDB: 52230 results

8VRV
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BU of 8vrv by Molmil
GII.4c H2-tri HBGA norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein, FORMIC ACID, ...
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2024-01-22
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Advancement of norovirus therapies
To Be Published
5NC7
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BU of 5nc7 by Molmil
ENAH EVH1 in complex with Ac-WPPPPTEDEL-NH2
Descriptor: ActA-derived 10-mer Ac-FPPPPTEDEL-NH2 with acetylated (Ac) and amidated (NH2) termini. Phe is substitued by Trp to increase affinity for crystallization, Protein enabled homolog
Authors:Barone, M, Roske, Y.
Deposit date:2017-03-03
Release date:2018-03-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells.
Proc.Natl.Acad.Sci.USA, 117, 2020
5ND0
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BU of 5nd0 by Molmil
ENAH EVH1 in complex with Ac-[2-Cl-F]-PP-[ProM-1]-TEDEL-NH2
Descriptor: 5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE, NITRATE ION, Protein enabled homolog, ...
Authors:Barone, M, Roske, Y.
Deposit date:2017-03-07
Release date:2018-03-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells.
Proc.Natl.Acad.Sci.USA, 117, 2020
8VRU
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BU of 8vru by Molmil
GII.4c apo norovirus protruding domain
Descriptor: 1,2-ETHANEDIOL, Capsid protein, FORMIC ACID
Authors:Kher, G, Prewitt, A, Pancera, M, Hansman, G.
Deposit date:2024-01-22
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Advancement of norovirus therapies
To Be Published
5NEG
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BU of 5neg by Molmil
ENAH EVH1 in complex with Ac-[2-Cl-F]-[ProM-2]-[ProM-13]-OEt
Descriptor: NITRATE ION, Protein enabled homolog, SULFATE ION, ...
Authors:Barone, M, Roske, Y.
Deposit date:2017-03-10
Release date:2018-03-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells.
Proc.Natl.Acad.Sci.USA, 117, 2020
6MBI
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BU of 6mbi by Molmil
Crystal Structure of SNX15 PX domain in domain swapped conformation form 2
Descriptor: Sorting nexin-15
Authors:Chandra, M, Collins, B.M.
Deposit date:2018-08-29
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.834 Å)
Cite:Classification of the human phox homology (PX) domains based on their phosphoinositide binding specificities.
Nat Commun, 10, 2019
5D4I
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BU of 5d4i by Molmil
Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
1R4C
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BU of 1r4c by Molmil
N-Truncated Human Cystatin C; Dimeric Form With 3D Domain Swapping
Descriptor: Cystatin C
Authors:Janowski, R, Abrahamson, M, Grubb, A, Jaskolski, M.
Deposit date:2003-10-06
Release date:2004-09-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Domain swapping in N-truncated human cystatin C.
J.Mol.Biol., 341, 2004
8DA2
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BU of 8da2 by Molmil
Acinetobacter baumannii L,D-transpeptidase
Descriptor: L,D-transpeptidase family protein
Authors:Toth, M, Stewart, N.K, Smith, C.A, Vakulenko, S.B.
Deposit date:2022-06-12
Release date:2022-09-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The l,d-Transpeptidase Ldt Ab from Acinetobacter baumannii Is Poorly Inhibited by Carbapenems and Has a Unique Structural Architecture.
Acs Infect Dis., 8, 2022
2QRW
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BU of 2qrw by Molmil
Crystal structure of Mycobacterium tuberculosis trHbO WG8F mutant
Descriptor: CYANIDE ION, Hemoglobin-like protein HbO, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Milani, M, Bolognesi, M.
Deposit date:2007-07-30
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:The Roles of Tyr(CD1) and Trp(G8) in Mycobacterium tuberculosis Truncated Hemoglobin O in Ligand Binding and on the Heme Distal Site Architecture
Biochemistry, 46, 2007
6S69
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BU of 6s69 by Molmil
Crystal structure of hTEAD2 in complex with a trisubstituted pyrazole inhibitor
Descriptor: 3-[3-(3,4-dichlorophenyl)-4-(2-phenylethylcarbamoyl)pyrazol-1-yl]propanoic acid, MYRISTIC ACID, Transcriptional enhancer factor TEF-4
Authors:Sturbaut, M, Allemand, F, Guichou, J.F.
Deposit date:2019-07-02
Release date:2020-07-22
Last modified:2022-02-02
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of a cryptic site at the interface 2 of TEAD - Towards a new family of YAP/TAZ-TEAD inhibitors.
Eur.J.Med.Chem., 226, 2021
7A0O
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BU of 7a0o by Molmil
NMR structure of flagelliform spidroin (FlagSp) N-terminal domain from Trichonephila clavipes at pH 5.5
Descriptor: Flagelliform spidroin variant 1
Authors:Sarr, M, Kitoka, K, Walsh-White, K.-A, Kaldmae, M, Landreh, M, Rising, A, Johansson, J, Jaudzems, K, Kronqvist, N.
Deposit date:2020-08-10
Release date:2021-08-18
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The dimerization mechanism of the N-terminal domain of spider silk proteins is conserved despite extensive sequence divergence.
J.Biol.Chem., 298, 2022
7QKA
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BU of 7qka by Molmil
Crystal structure of SARS-CoV-2 Main Protease in complex with covalently bound GC376
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide
Authors:Reinke, P.Y.A, Falke, S, Lieske, J, Ewert, W, Loboda, J, Rahmani Mashhour, A, Hauser, M, Karnicar, K, Usenik, A, Lindic, N, Lach, M, Boehler, H, Beck, T, Cox, R, Chapman, H.N, Hinrichs, W, Turk, D, Guenther, S, Meents, A.
Deposit date:2021-12-17
Release date:2022-12-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Calpeptin is a potent cathepsin inhibitor and drug candidate for SARS-CoV-2 infections.
Commun Biol, 6, 2023
5VAL
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BU of 5val by Molmil
BRAF in Complex with N-(3-(tert-butyl)phenyl)-4-methyl-3-(6-morpholinopyrimidin-4-yl)benzamide
Descriptor: N-(3-tert-butylphenyl)-4-methyl-3-[6-(morpholin-4-yl)pyrimidin-4-yl]benzamide, Serine/threonine-protein kinase B-raf
Authors:Mamo, M, Appleton, B.A.
Deposit date:2017-03-27
Release date:2017-06-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Design and Discovery of N-(2-Methyl-5'-morpholino-6'-((tetrahydro-2H-pyran-4-yl)oxy)-[3,3'-bipyridin]-5-yl)-3-(trifluoromethyl)benzamide (RAF709): A Potent, Selective, and Efficacious RAF Inhibitor Targeting RAS Mutant Cancers.
J. Med. Chem., 60, 2017
5NBX
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BU of 5nbx by Molmil
ENAH EVH1 in complex with Ac-[2-Cl-F]-PP-[ProM-9]-OH
Descriptor: ACY-2L5-PRO-PRO-8SN, BROMIDE ION, Protein enabled homolog
Authors:Barone, M, Roske, Y.
Deposit date:2017-03-02
Release date:2018-03-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells.
Proc.Natl.Acad.Sci.USA, 117, 2020
7A0I
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BU of 7a0i by Molmil
NMR structure of flagelliform spidroin (FlagSp) N-terminal domain from Trichonephila clavipes at pH 7.2
Descriptor: Flagelliform spidroin variant 1
Authors:Sarr, M, Kitoka, K, Walsh-White, K.-A, Kaldmae, M, Landreh, M, Rising, A, Johansson, J, Jaudzems, K, Kronqvist, N.
Deposit date:2020-08-09
Release date:2021-08-18
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The dimerization mechanism of the N-terminal domain of spider silk proteins is conserved despite extensive sequence divergence.
J.Biol.Chem., 298, 2022
5NDU
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BU of 5ndu by Molmil
ENAH EVH1 in complex with Ac-[2-Cl-F]-[ProM-2]-[ProM-12]-OMe
Descriptor: GLYCEROL, NITRATE ION, Protein enabled homolog, ...
Authors:Barone, M, Roske, Y.
Deposit date:2017-03-09
Release date:2018-03-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UVS
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BU of 6uvs by Molmil
Human Connexin-26 (Low pH open conformation)
Descriptor: Gap junction beta-2 protein
Authors:Khan, A.K, Jagielnicki, M, Purdy, M.D, Yeager, M.
Deposit date:2019-11-04
Release date:2020-04-29
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:A Steric "Ball-and-Chain" Mechanism for pH-Mediated Regulation of Gap Junction Channels.
Cell Rep, 31, 2020
6V1Z
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BU of 6v1z by Molmil
genome-containing AAVrh.39 particles
Descriptor: Capsid protein VP1, DNA (5'-D(*CP*A)-3')
Authors:Mietzsch, M, Agbandje-McKenna, M.
Deposit date:2019-11-21
Release date:2019-12-11
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8.
J.Virol., 94, 2020
6PIK
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BU of 6pik by Molmil
Tetrameric cryo-EM ArnA
Descriptor: Bifunctional polymyxin resistance protein ArnA, UDP-4-amino-4-deoxy-L-arabinose formyltransferase
Authors:Yang, M, Gehring, K.
Deposit date:2019-06-26
Release date:2019-07-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Cryo-electron microscopy structures of ArnA, a key enzyme for polymyxin resistance, revealed unexpected oligomerizations and domain movements.
J.Struct.Biol., 208, 2019
6MFX
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BU of 6mfx by Molmil
Crystal structure of a 4-domain construct of a mutant of LgrA in the substrate donation state
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Linear gramicidin synthase subunit A, N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide, ...
Authors:Reimer, J.M, Eivaskhani, M, Schmeing, T.M.
Deposit date:2018-09-12
Release date:2019-11-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
6MFZ
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BU of 6mfz by Molmil
Crystal structure of dimodular LgrA in a condensation state
Descriptor: 4'-PHOSPHOPANTETHEINE, Linear gramicidin synthase subunit A
Authors:Reimer, J.M, Eivaskhani, M, Harb, I, Schmeing, T.M.
Deposit date:2018-09-12
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (6 Å)
Cite:Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
8W2F
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BU of 8w2f by Molmil
Plasmodium falciparum 20S proteasome bound to an inhibitor
Descriptor: (3S)-1-[(2-fluoroethoxy)acetyl]-N-{[(4P)-4-(6-methylpyridin-3-yl)-1,3-thiazol-2-yl]methyl}piperidine-3-carboxamide, Proteasome endopeptidase complex, Proteasome subunit alpha type, ...
Authors:Han, Y, Deng, X, Ray, S, Chen, Z, Phillips, M.
Deposit date:2024-02-20
Release date:2024-07-31
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Identification of potent and reversible piperidine carboxamides that are species-selective orally active proteasome inhibitors to treat malaria.
Cell Chem Biol, 31, 2024
6S1V
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BU of 6s1v by Molmil
Crystal structure of dimeric M-PMV protease D26N mutant in complex with inhibitor
Descriptor: Gag-Pro-Pol polyprotein, PRO-0A1-VAL-PSA-ALA-MET-THR
Authors:Wosicki, S, Gilski, M, Jaskolski, M, Zabranska, H, Pichova, I.
Deposit date:2019-06-19
Release date:2019-10-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Comparison of a retroviral protease in monomeric and dimeric states.
Acta Crystallogr D Struct Biol, 75, 2019
7APF
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BU of 7apf by Molmil
Crystal structure of JAK3 in complex with FM601 (compound 10a)
Descriptor: 1,2-ETHANEDIOL, 1-phenylurea, 3-[3-(propanoylamino)phenyl]-1~{H}-pyrrolo[2,3-b]pyridine-5-carboxamide, ...
Authors:Chaikuad, A, Forster, M, Gehringer, M, Laufer, S, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-10-16
Release date:2020-12-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Discovery of a Novel Class of Covalent Dual Inhibitors Targeting the Protein Kinases BMX and BTK.
Int J Mol Sci, 21, 2020

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PDB entries from 2024-11-06

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