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PDB: 51630 results

7MJ6
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HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, Insulin-like growth factor-binding protein-like 1 peptide, ...
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
8ORV
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BU of 8orv by Molmil
Crystal structure of monkeypox virus poxin in complex with the STING agonist MD1203
Descriptor: 9-[(1~{S},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one, MPXVgp165
Authors:Duchoslav, V, Klima, M, Boura, E.
Deposit date:2023-04-17
Release date:2023-12-20
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Fluorinated cGAMP analogs, which act as STING agonists and are not cleavable by poxins: Structural basis of their function.
Structure, 32, 2024
8P44
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Crystal structure of monkeypox virus poxin in complex with the STING agonist MD1202D
Descriptor: 9-[(1~{S},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one, MPXVgp165
Authors:Duchoslav, V, Klima, M, Boura, E.
Deposit date:2023-05-19
Release date:2023-12-20
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Fluorinated cGAMP analogs, which act as STING agonists and are not cleavable by poxins: Structural basis of their function.
Structure, 32, 2024
8P45
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BU of 8p45 by Molmil
Crystal structure of human STING in complex with the agonist MD1202D
Descriptor: 9-[(1~{S},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one, Stimulator of interferon genes protein
Authors:Klima, M, Boura, E.
Deposit date:2023-05-19
Release date:2023-12-20
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Fluorinated cGAMP analogs, which act as STING agonists and are not cleavable by poxins: Structural basis of their function.
Structure, 32, 2024
5VAB
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BU of 5vab by Molmil
Crystal structure of ATXR5 PHD domain in complex with histone H3
Descriptor: ATXR5 PHD domain, Histone H3 peptide, ZINC ION
Authors:Bergamin, E, Sarvan, S, Malette, J, Eram, M, Yeung, S, Mongeon, V, Joshi, M, Brunzelle, J.S, Michaels, S.D, Blais, A, Vedadi, M, Couture, J.-F.
Deposit date:2017-03-24
Release date:2017-04-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Molecular basis for the methylation specificity of ATXR5 for histone H3.
Nucleic Acids Res., 45, 2017
7MJ7
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BU of 7mj7 by Molmil
HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, Insulin-like growth factor-binding protein-like 1 peptide, ...
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
8ORW
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BU of 8orw by Molmil
Crystal structure of human STING in complex with the agonist MD1203
Descriptor: 9-[(1~{S},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one, Stimulator of interferon protein
Authors:Klima, M, Boura, E.
Deposit date:2023-04-17
Release date:2023-12-20
Last modified:2024-04-17
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Fluorinated cGAMP analogs, which act as STING agonists and are not cleavable by poxins: Structural basis of their function.
Structure, 32, 2024
5DO6
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BU of 5do6 by Molmil
Crystal structure of Dendroaspis polylepis venom mambalgin-1 T23A mutant
Descriptor: 1,2-ETHANEDIOL, IODIDE ION, Mambalgin-1, ...
Authors:Stura, E.A, Tepshi, L, Kessler, P, Gilles, M, Servent, D.
Deposit date:2015-09-10
Release date:2015-12-30
Last modified:2017-01-25
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:Mambalgin-1 Pain-relieving Peptide, Stepwise Solid-phase Synthesis, Crystal Structure, and Functional Domain for Acid-sensing Ion Channel 1a Inhibition.
J.Biol.Chem., 291, 2016
7MJA
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BU of 7mja by Molmil
HLA-A*24:02 bound to Neuroblastoma derived PHOX2B peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
5DRW
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BU of 5drw by Molmil
Crystal structure of the BCR Fab fragment from subset #4 case CLL183
Descriptor: CLL183 BCR antibody heavy chain, CLL183 BCR antibody light chain
Authors:Minici, C, Degano, M.
Deposit date:2015-09-16
Release date:2016-09-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Distinct homotypic B-cell receptor interactions shape the outcome of chronic lymphocytic leukaemia.
Nat Commun, 8, 2017
7MJ8
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BU of 7mj8 by Molmil
HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, Insulin-like growth factor-binding protein-like 1 peptide, ...
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
6OHL
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BU of 6ohl by Molmil
Crystal structure of Fusobacterium nucleatum flavodoxin bound to flavin mononucleotide
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin, GLYCEROL, ...
Authors:Kolesnikov, M, Murphy, M.E.P.
Deposit date:2019-04-05
Release date:2019-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural insight into the high reduction potentials observed for Fusobacterium nucleatum flavodoxin.
Protein Sci., 28, 2019
8OIW
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BU of 8oiw by Molmil
Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under oxidising conditions (space group P 21 21 21)
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, CHLORIDE ION, ...
Authors:Di Palma, M, Chegkazi, M, Bui, S, Mori, G, Percudani, R, Steiner, R.A.
Deposit date:2023-03-23
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism.
Mol.Biol.Evol., 40, 2023
2C9F
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BU of 2c9f by Molmil
THE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON DODECAHEDRON
Descriptor: FIBER, PENTON PROTEIN
Authors:Fuschiotti, P, Schoehn, G, Fender, P, Fabry, C.M.S, Hewat, E.A, Chroboczek, J, Ruigrok, R.W.H, Conway, J.F.
Deposit date:2005-12-12
Release date:2006-03-02
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (16.5 Å)
Cite:Structure of the Dodecahedral Penton Particle from Human Adenovirus Type 3.
J.Mol.Biol., 356, 2006
8DG8
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BU of 8dg8 by Molmil
Cryo-EM Structure of HPIV3 prefusion F trimer in complex with 3x1 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3x1 monoclonal antibody, VH region, ...
Authors:Rodarte, J.V, Pancera, M.
Deposit date:2022-06-23
Release date:2023-02-22
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Cross-protective antibodies against common endemic respiratory viruses.
Nat Commun, 14, 2023
8DG9
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BU of 8dg9 by Molmil
Cryo-EM Structure of RSV prefusion F trimer in complex with three MxR Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F0, mAb MxR Heavy Chain, ...
Authors:Rodarte, J.V, Pancera, M.
Deposit date:2022-06-23
Release date:2023-02-22
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:Cross-protective antibodies against common endemic respiratory viruses.
Nat Commun, 14, 2023
5E28
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BU of 5e28 by Molmil
Crystal structure of human carbonic anhydrase II in complex with the 4-(4-aminophenyl)benzenesulfonamide inhibitor
Descriptor: 4'-aminobiphenyl-4-sulfonamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Ferraroni, M, Supuran, C.T.
Deposit date:2015-09-30
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:4-Arylbenzenesulfonamides as Human Carbonic Anhydrase Inhibitors (hCAIs): Synthesis by Pd Nanocatalyst-Mediated Suzuki-Miyaura Reaction, Enzyme Inhibition, and X-ray Crystallographic Studies.
J.Med.Chem., 59, 2016
2HKE
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BU of 2hke by Molmil
Mevalonate diphosphate decarboxylase from Trypanosoma brucei
Descriptor: Diphosphomevalonate decarboxylase, putative, SULFATE ION
Authors:Byres, E, Alphey, M.S, Hunter, W.N.
Deposit date:2006-07-04
Release date:2007-06-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Trypanosoma brucei and Staphylococcus aureus Mevalonate Diphosphate Decarboxylase Inform on the Determinants of Specificity and Reactivity
J.Mol.Biol., 371, 2007
8OT1
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BU of 8ot1 by Molmil
unseeded Abeta(1-40) amyloid fibril (morphology i)
Descriptor: Amyloid-beta A4 protein
Authors:Pfeiffer, P.B, Schmidt, M, Faendrich, M.
Deposit date:2023-04-20
Release date:2024-02-07
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Cryo-EM Analysis of the Effect of Seeding with Brain-derived A beta Amyloid Fibrils.
J.Mol.Biol., 436, 2023
8OT3
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BU of 8ot3 by Molmil
unseeded Abeta(1-40) amyloid fibril (morphology ii)
Descriptor: Amyloid-beta A4 protein
Authors:Pfeiffer, P.B, Schmidt, M, Faendrich, M.
Deposit date:2023-04-20
Release date:2024-02-07
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Cryo-EM Analysis of the Effect of Seeding with Brain-derived A beta Amyloid Fibrils.
J.Mol.Biol., 436, 2023
8OT4
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BU of 8ot4 by Molmil
seeded Abeta(1-40) amyloid fibril (morphology I)
Descriptor: Amyloid-beta A4 protein
Authors:Pfeiffer, P.B, Schmidt, M, Faendrich, M.
Deposit date:2023-04-20
Release date:2024-02-07
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Cryo-EM Analysis of the Effect of Seeding with Brain-derived A beta Amyloid Fibrils.
J.Mol.Biol., 436, 2023
7M98
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BU of 7m98 by Molmil
ATAD2 bromodomain complexed with histone H4K5ac (res 1-10) ligand
Descriptor: ATPase family AAA domain-containing protein 2, Histone H4
Authors:Malone, K.L, Phillips, M, Nix, J.C, Glass, K.C.
Deposit date:2021-03-30
Release date:2021-09-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Coordination of Di-Acetylated Histone Ligands by the ATAD2 Bromodomain.
Int J Mol Sci, 22, 2021
6OL8
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BU of 6ol8 by Molmil
Crystal structure of NDM-12 metallo-beta-lactamase in complex with hydrolyzed ampicillin
Descriptor: (2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, Metallo-beta-lactamase NDM-12, ...
Authors:Raczynska, J.E, Imiolczyk, B, Jaskolski, M.
Deposit date:2019-04-16
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Flexible loops of New Delhi metallo-beta-lactamase modulate its activity towards different substrates.
Int.J.Biol.Macromol., 158, 2020
5VGU
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BU of 5vgu by Molmil
Structure of Halothece sp. PCC 7418 CcmK4
Descriptor: Microcompartments protein
Authors:Sutter, M, Sommer, M, Kerfeld, C.A.
Deposit date:2017-04-11
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.80719328 Å)
Cite:Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells.
Plant Physiol., 179, 2019
6TLO
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BU of 6tlo by Molmil
HUMAN CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 4,5,6-TRIBROMOBENZOTRIAZOLE
Descriptor: 5,6,7-tris(bromanyl)-1~{H}-benzotriazole, CHLORIDE ION, Casein kinase II subunit alpha, ...
Authors:Czapinska, H, Piasecka, A, Winiewska-Szajewska, M, Bochtler, M, Poznanski, J.
Deposit date:2019-12-03
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2.
J.Phys.Chem.B, 125, 2021

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PDB entries from 2024-08-28

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