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PDB: 51938 results

1Z66
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NMR solution structure of domain III of E-protein of tick-borne Langat flavivirus (no RDC restraints)
Descriptor: Major envelope protein E
Authors:Mukherjee, M, Dutta, K, White, M.A, Cowburn, D, Fox, R.O.
Deposit date:2005-03-21
Release date:2006-03-28
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR solution structure and backbone dynamics of domain III of the E protein of tick-borne Langat flavivirus suggests a potential site for molecular recognition.
Protein Sci., 15, 2006
1ZO3
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BU of 1zo3 by Molmil
The P-site and P/E-site tRNA structures fitted to P/I site codon.
Descriptor: tRNA
Authors:Allen, G.S, Zavialov, A, Gursky, R, Ehrenberg, M, Frank, J.
Deposit date:2005-05-12
Release date:2005-06-14
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (13.8 Å)
Cite:The Cryo-EM Structure of a Translation Initiation Complex from Escherichia coli.
Cell(Cambridge,Mass.), 121, 2005
6UNT
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BU of 6unt by Molmil
Barrier-to-autointegration factor soaked in DMSO: 1 of 14 in MSCS set
Descriptor: Barrier-to-autointegration factor, ETHANOL
Authors:Agarwal, S, Smith, M, De La Rosa, I, Kliment, A.V, Swartz, P, Segura-Totten, M, Mattos, C.
Deposit date:2019-10-13
Release date:2020-10-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor.
Acta Crystallogr D Struct Biol, 76, 2020
8JHK
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BU of 8jhk by Molmil
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Descriptor: Dedicator of cytokinesis protein 5, Engulfment and cell motility protein 1
Authors:Kukimoto-Niino, M, Katsura, K, Ishizuka-Katsura, Y, Mishima-Tsumagari, C, Yonemochi, M, Inoue, M, Nakagawa, R, Kaushik, R, Zhang, K.Y.J, Shirouzu, M.
Deposit date:2023-05-23
Release date:2024-05-29
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.76 Å)
Cite:RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state.
J.Biol.Chem., 300, 2024
1Z4A
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BU of 1z4a by Molmil
Ferritin from T. maritima
Descriptor: EICOSANE, ferritin
Authors:Steinbacher, S, Schiffmann, S, Bacher, A, Fischer, M.
Deposit date:2005-03-15
Release date:2006-10-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of T. maritima ferritin
To be Published
1ZGT
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BU of 1zgt by Molmil
Structure of hydrogenated rat gamma E crystallin in H2O
Descriptor: ACETATE ION, Gamma crystallin E
Authors:Artero, J.B, Hartlein, M, McSweeney, S, Timmins, P.
Deposit date:2005-04-22
Release date:2005-11-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A comparison of refined X-ray structures of hydrogenated and perdeuterated rat gammaE-crystallin in H2O and D2O.
Acta Crystallogr.,Sect.D, 61, 2005
7RQ6
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BU of 7rq6 by Molmil
Cryo-EM structure of SARS-CoV-2 spike in complex with non-neutralizing NTD-directed CV3-13 Fab isolated from convalescent individual
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CV3-13 Fab heavy chain, ...
Authors:Chen, Y, Pozharski, E, Tolbert, W.D, Pazgier, M.
Deposit date:2021-08-05
Release date:2022-04-20
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:A Fc-enhanced NTD-binding non-neutralizing antibody delays virus spread and synergizes with a nAb to protect mice from lethal SARS-CoV-2 infection.
Cell Rep, 38, 2022
1Z83
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BU of 1z83 by Molmil
Crystal structure of human AK1A in complex with AP5A
Descriptor: Adenylate kinase 1, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, SULFATE ION, ...
Authors:Filippakopoulos, P, Bunkoczi, G, Jansson, A, Schreurs, A, Knapp, S, Edwards, A, von Delft, F, Sundstrom, M, Structural Genomics Consortium (SGC)
Deposit date:2005-03-29
Release date:2005-04-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human AK1A in complex with AP5A
To be Published
1Z92
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structure of interleukin-2 with its alpha receptor
Descriptor: Interleukin-2, Interleukin-2 receptor alpha chain
Authors:Rickert, M, Wang, X.Q, Goriatcheva, N, Boulanger, M.J, Garcia, K.C.
Deposit date:2005-03-31
Release date:2005-06-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The structure of interleukin-2 complexed with its alpha receptor.
Science, 308, 2005
1ZIR
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BU of 1zir by Molmil
Deuterated gammaE crystallin in H2O solvent
Descriptor: ACETATE ION, Gamma crystallin E
Authors:Artero, J.B, Hartlein, M, McSweeney, S, Timmins, P.
Deposit date:2005-04-27
Release date:2005-11-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:A comparison of refined X-ray structures of hydrogenated and perdeuterated rat gammaE-crystallin in H2O and D2O.
Acta Crystallogr.,Sect.D, 61, 2005
1Z9Z
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BU of 1z9z by Molmil
Crystal structure of yeast sla1 SH3 domain 3
Descriptor: Cytoskeleton assembly control protein SLA1, SULFATE ION
Authors:Kursula, P, Kursula, I, Salmazo, A.P.T, Zou, P, Song, Y.H, Lehmann, F, Wilmanns, M.
Deposit date:2005-04-05
Release date:2006-04-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Yeast SH3 domain three-dimensional proteome
To be Published
5JOG
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BU of 5jog by Molmil
CRYSTAL STRUCTURE OF CSN5(2-257) IN COMPLEX WITH CNS5i-3
Descriptor: 3-(difluoromethyl)-N-{6-[(5S,6S)-6-hydroxy-6,7,8,9-tetrahydro-5H-imidazo[1,5-a]azepin-5-yl][1,1'-biphenyl]-3-yl}-1-(propan-2-yl)-1H-pyrazole-5-carboxamide, COP9 signalosome complex subunit 5, ZINC ION
Authors:Renatus, M, Wiesmann, C.
Deposit date:2016-05-02
Release date:2016-11-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Targeted inhibition of the COP9 signalosome for treatment of cancer.
Nat Commun, 7, 2016
1LP3
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BU of 1lp3 by Molmil
The Atomic Structure of Adeno-Associated Virus (AAV-2), a Vector for Human Gene Therapy
Descriptor: AAV-2 capsid protein
Authors:Xie, Q, Bu, W, Bhatia, S, Hare, J, Somasundaram, T, Azzi, A, Chapman, M.S.
Deposit date:2002-05-07
Release date:2002-08-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:The atomic structure of adeno-associated virus (AAV-2), a vector for human gene therapy.
Proc.Natl.Acad.Sci.USA, 99, 2002
1ZBL
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BU of 1zbl by Molmil
Bacillus halodurans RNase H catalytic domain mutant D192N in complex with 12-mer RNA/DNA hybrid
Descriptor: 5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3', 5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3', MAGNESIUM ION, ...
Authors:Nowotny, M, Gaidamakov, S.A, Crouch, R.J, Yang, W.
Deposit date:2005-04-08
Release date:2005-07-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis.
Cell(Cambridge,Mass.), 121, 2005
1ZF4
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BU of 1zf4 by Molmil
ATC Four-stranded DNA Holliday Junction
Descriptor: 5'-D(*CP*CP*GP*AP*TP*AP*TP*CP*GP*G)-3', SODIUM ION
Authors:Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
Deposit date:2005-04-19
Release date:2005-05-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZFF
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BU of 1zff by Molmil
TTC Duplex B-DNA
Descriptor: 5'-D(*CP*CP*GP*AP*AP*TP*TP*CP*GP*G)-3'
Authors:Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
Deposit date:2005-04-20
Release date:2005-05-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZG2
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BU of 1zg2 by Molmil
Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.
Descriptor: Hypothetical UPF0213 protein BH0048
Authors:Aramini, J.M, Swapna, G.V.T, Xiao, R, Ma, L, Shastry, R, Ciano, M, Acton, T.B, Liu, J, Rost, B, Cort, J.R, Kennedy, M.A, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-04-20
Release date:2005-06-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.
To be Published
6F4N
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BU of 6f4n by Molmil
Human JMJD5 in complex with MN and 2OG.
Descriptor: 2-OXOGLUTARIC ACID, JmjC domain-containing protein 5, MANGANESE (II) ION
Authors:Chowdhury, R, Islam, M.S, Schofield, C.J.
Deposit date:2017-11-29
Release date:2018-04-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.541 Å)
Cite:JMJD5 is a human arginyl C-3 hydroxylase.
Nat Commun, 9, 2018
1ZOH
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BU of 1zoh by Molmil
Crystal structure of protein kinase CK2 in complex with TBB-derivatives inhibitors
Descriptor: 1,2-ETHANEDIOL, 5,6,7,8-TETRABROMO-1-METHYL-2,3-DIHYDRO-1H-IMIDAZO[1,2-A]BENZIMIDAZOLE, CHLORIDE ION, ...
Authors:Battistutta, R, Mazzorana, M, Sarno, S, Kazimierczuk, Z, Zanotti, G, Pinna, L.A.
Deposit date:2005-05-13
Release date:2005-11-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Inspecting the structure-activity relationship of protein kinase CK2 inhibitors derived from tetrabromo-benzimidazole.
Chem.Biol., 12, 2005
6B5M
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BU of 6b5m by Molmil
Structure of PfCSP peptide 21 with human protective antibody CIS43
Descriptor: 1,2-ETHANEDIOL, CIS43 Fab Heavy chain, CIS43 Fab Light chain, ...
Authors:Pancera, M, Weidle, C.
Deposit date:2017-09-29
Release date:2018-03-21
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018
8E74
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BU of 8e74 by Molmil
Mycobacterium tuberculosis RNAP paused elongation complex with NusG transcription factor
Descriptor: DNA (54-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Delbeau, M, Darst, S.A, Campbell, E.A.
Deposit date:2022-08-23
Release date:2023-03-22
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structural and functional basis of the universal transcription factor NusG pro-pausing activity in Mycobacterium tuberculosis.
Mol.Cell, 83, 2023
1ZOW
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BU of 1zow by Molmil
Crystal Structure of S. aureus FabH, beta-ketoacyl carrier protein synthase III
Descriptor: 3-oxoacyl-[acyl-carrier-protein] synthase III
Authors:Qiu, X, Choudhry, A.E, Janson, C.A, Grooms, M, Daines, R.A, Lonsdale, J.T, Khandekar, S.S.
Deposit date:2005-05-15
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and substrate specificity of the beta-ketoacyl-acyl carrier protein synthase III (FabH) from Staphylococcus aureus.
Protein Sci., 14, 2005
6B5T
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BU of 6b5t by Molmil
Structure of PfCSP peptide 29 with human antibody CIS42
Descriptor: AMMONIUM ION, CIS42 Fab Heavy chain, CIS42 Fab Light chain, ...
Authors:Pancera, M, Weidle, C.
Deposit date:2017-09-29
Release date:2018-03-21
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (2.222 Å)
Cite:A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018
1LT9
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BU of 1lt9 by Molmil
Crystal Structure of Recombinant Human Fibrinogen Fragment D
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrinogen alpha/alpha-E chain, ...
Authors:Kostelansky, M.S, Betts, L, Gorkun, O.V, Lord, S.T.
Deposit date:2002-05-20
Release date:2002-11-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:2.8 A Crystal Structures of Recombinant Fibrinogen Fragment D with and without Two Peptide Ligands: GHRP Binding to the "b" Site Disrupts Its Nearby Calcium-binding Site.
Biochemistry, 41, 2002
8E82
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Mycobacterium tuberculosis RNAP elongation complex with NusG transcription factor
Descriptor: DNA (54-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Delbeau, M, Darst, S.A, Campbell, E.A.
Deposit date:2022-08-25
Release date:2023-03-22
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structural and functional basis of the universal transcription factor NusG pro-pausing activity in Mycobacterium tuberculosis.
Mol.Cell, 83, 2023

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