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PDB: 51689 件

7PDZ
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BU of 7pdz by Molmil
Structure of capping protein bound to the barbed end of a cytoplasmic actin filament
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
著者Funk, J, Merino, F, Schacks, M, Rottner, K, Raunser, S, Bieling, P.
登録日2021-08-09
公開日2021-09-01
最終更新日2021-10-06
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献A barbed end interference mechanism reveals how capping protein promotes nucleation in branched actin networks.
Nat Commun, 12, 2021
6M4K
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BU of 6m4k by Molmil
X-ray crystal structure of wild type alpha-amylase I from Eisenia fetida
分子名称: ACETATE ION, Alpha-amylase, CALCIUM ION, ...
著者Hirano, Y, Tsukamoto, K, Ariki, S, Naka, Y, Ueda, M, Tamada, T.
登録日2020-03-07
公開日2020-09-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献X-ray crystallographic structural studies of alpha-amylase I from Eisenia fetida.
Acta Crystallogr D Struct Biol, 76, 2020
7PE9
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BU of 7pe9 by Molmil
cryo-EM structure of DEPTOR bound to human mTOR complex 2, DEPt-bound subset local refinement
分子名称: ACETYL GROUP, DEP domain-containing mTOR-interacting protein, INOSITOL HEXAKISPHOSPHATE, ...
著者Waelchli, M, Maier, T.
登録日2021-08-09
公開日2021-09-08
最終更新日2021-09-29
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
1WJB
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BU of 1wjb by Molmil
SOLUTION STRUCTURE OF THE N-TERMINAL ZN BINDING DOMAIN OF HIV-1 INTEGRASE (D FORM), NMR, 40 STRUCTURES
分子名称: HIV-1 INTEGRASE, ZINC ION
著者Clore, G.M, Cai, M, Caffrey, M, Gronenborn, A.M.
登録日1997-05-13
公開日1998-05-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the N-terminal zinc binding domain of HIV-1 integrase.
Nat.Struct.Biol., 4, 1997
7PEB
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BU of 7peb by Molmil
cryo-EM structure of DEPTOR bound to human mTOR complex 1, focussed on one protomer
分子名称: DEP domain-containing mTOR-interacting protein, INOSITOL HEXAKISPHOSPHATE, Regulatory-associated protein of mTOR, ...
著者Waelchli, M, Maier, T.
登録日2021-08-09
公開日2021-09-08
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.67 Å)
主引用文献Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
7PE8
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BU of 7pe8 by Molmil
cryo-EM structure of DEPTOR bound to human mTOR complex 2, focussed on one protomer
分子名称: ACETYL GROUP, DEP domain-containing mTOR-interacting protein, INOSITOL HEXAKISPHOSPHATE, ...
著者Waelchli, M, Maier, T.
登録日2021-08-09
公開日2021-09-08
最終更新日2021-09-29
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
6I48
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BU of 6i48 by Molmil
Structure of P. aeruginosa LpxC with compound 12: (2R)-4-(6-(2-Fluoro-4-methoxyphenyl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)-yl)-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide
分子名称: (2~{R})-4-[6-(2-fluoranyl-4-methoxy-phenyl)-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide, 1,2-ETHANEDIOL, UDP-3-O-acyl-N-acetylglucosamine deacetylase, ...
著者Surivet, J.-P, Panchaud, P, Specklin, J.-L, Diethelm, S, Blumstein, A.-C, Gauvin, J.-C, Jacob, L, Masse, F, Mathieu, G, Mirre, A, Schmitt, C, Enderlin-Paput, M, Lange, R, Bur, D, Tidten-Luksch, N, Gnerre, C, Seeland, S, Hermann, C, Locher, H.H, Seiler, P, Mac Sweeney, A, Hubschwerlen, C, Ritz, D, Rueedi, G.
登録日2018-11-09
公開日2019-12-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.196 Å)
主引用文献Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria.
J.Med.Chem., 63, 2020
7PEC
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BU of 7pec by Molmil
cryo-EM structure of DEPTOR bound to human mTOR complex 1, DEPt-bound subset local refinement
分子名称: DEP domain-containing mTOR-interacting protein, INOSITOL HEXAKISPHOSPHATE, Regulatory-associated protein of mTOR, ...
著者Waelchli, M, Maier, T.
登録日2021-08-09
公開日2021-09-08
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (4.24 Å)
主引用文献Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
6IBI
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BU of 6ibi by Molmil
Copper binding protein from Laetisaria arvalis (LaX325)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Auxiliary activity CAZyme, COPPER (II) ION, ...
著者Frandsen, K.E.H, Tandrup, T, Labourel, A, Haon, M, Berrin, J.-G, Lo Leggio, L.
登録日2018-11-30
公開日2019-11-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献A fungal family of lytic polysaccharide monooxygenase-like copper proteins.
Nat.Chem.Biol., 16, 2020
7PEA
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BU of 7pea by Molmil
cryo-EM structure of DEPTOR bound to human mTOR complex 1, overall refinement
分子名称: DEP domain-containing mTOR-interacting protein, INOSITOL HEXAKISPHOSPHATE, Regulatory-associated protein of mTOR, ...
著者Waelchli, M, Maier, T.
登録日2021-08-09
公開日2021-09-08
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (4.07 Å)
主引用文献Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
6TUO
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BU of 6tuo by Molmil
Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTACGTACAAT
分子名称: 5'-D(*AP*TP*TP*GP*TP*AP*CP*GP*TP*AP*CP*AP*AP*TP)-3', BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
著者Grazulis, S, Zaremba, M.
登録日2020-01-07
公開日2021-01-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTACGTACAAT
To be published
7PED
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BU of 7ped by Molmil
DEPTOR DEP domain tandem (DEPt)
分子名称: DEP domain-containing mTOR-interacting protein
著者Waelchli, M, Jakob, R, Maier, T.
登録日2021-08-09
公開日2021-09-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
7PE7
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BU of 7pe7 by Molmil
cryo-EM structure of DEPTOR bound to human mTOR complex 2, overall refinement
分子名称: ACETYL GROUP, DEP domain-containing mTOR-interacting protein, INOSITOL HEXAKISPHOSPHATE, ...
著者Waelchli, M, Maier, T.
登録日2021-08-09
公開日2021-09-15
最終更新日2021-09-29
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献Regulation of human mTOR complexes by DEPTOR.
Elife, 10, 2021
6U0V
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BU of 6u0v by Molmil
Atomic-Resolution Cryo-EM Structure of AAV2 VLP
分子名称: Capsid protein VP1
著者Agbandje-Mckenna, M, Bennett, A.
登録日2019-08-14
公開日2020-08-19
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Cryo-EM structure of the chimeric vector AAV2.7m8
To Be Published
4OAN
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BU of 4oan by Molmil
Crystal structure of a TRAP periplasmic solute binding protein from rhodopseudomonas palustris HaA2 (RPB_2686), TARGET EFI-510221, with density modeled as (S)-2-hydroxy-2-methyl-3-oxobutanoate ((S)-2-Acetolactate)
分子名称: (2S)-2-hydroxy-2-methyl-3-oxobutanoic acid, CHLORIDE ION, GLYCEROL, ...
著者Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2014-01-05
公開日2014-01-22
最終更新日2015-02-25
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
4OB1
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BU of 4ob1 by Molmil
Crystal Structure of Nitrile Hydratase from Pseudonocardia thermophila bound to Butaneboronic Acid via Co-crystallization
分子名称: 1-BUTANE BORONIC ACID, COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, ...
著者Rui, W, Salette, M, Ruslan, S, Richard, H, Dali, L.
登録日2014-01-06
公開日2014-11-26
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (1.631 Å)
主引用文献The active site sulfenic acid ligand in nitrile hydratases can function as a nucleophile.
J.Am.Chem.Soc., 136, 2014
6LQI
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BU of 6lqi by Molmil
Cryo-EM structure of the mouse Piezo1 isoform Piezo1.1
分子名称: Piezo-type mechanosensitive ion channel component 1
著者Geng, J, Liu, W, Zhou, H, Zhang, T, Wang, L, Zhang, M, Shen, B, Li, X, Xiao, B.
登録日2020-01-13
公開日2020-03-04
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献A Plug-and-Latch Mechanism for Gating the Mechanosensitive Piezo Channel.
Neuron, 106, 2020
1ST0
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BU of 1st0 by Molmil
Structure of DcpS bound to m7GpppG
分子名称: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, YTTRIUM (III) ION, mRNA decapping enzyme
著者Gu, M, Fabrega, C, Liu, S.W, Liu, H, Kiledjian, M, Lima, C.D.
登録日2004-03-24
公開日2004-04-13
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Insights into the structure, mechanism, and regulation of scavenger mRNA decapping activity
Mol.Cell, 14, 2004
6LS1
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BU of 6ls1 by Molmil
Ribonuclease from Hericium erinaceus active and GMP binding form
分子名称: DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1, ...
著者Takebe, K, Suzuki, M, Sangawa, T, Kobayashi, H, Itagaki, T.
登録日2020-01-16
公開日2021-01-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Ribonuclease from Hericium erinaceus active and GMP binding form
To Be Published
6TXR
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BU of 6txr by Molmil
Structural insights into cubane-modified aptamer recognition of a malaria biomarker
分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ...
著者Cheung, Y, Roethlisberger, P, Mechaly, A, Weber, P, Wong, A, Lo, Y, Haouz, A, Savage, P, Hollenstein, M, Tanner, J.
登録日2020-01-14
公開日2020-07-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Evolution of abiotic cubane chemistries in a nucleic acid aptamer allows selective recognition of a malaria biomarker.
Proc.Natl.Acad.Sci.USA, 117, 2020
6OXO
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BU of 6oxo by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR2-91
分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[{[4-(hydroxymethyl)phenyl]sulfonyl}(2-methylpropyl)amino]-1-phenylbutan-2-yl}carbamate, Protease NL4-3, SULFATE ION
著者Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
登録日2019-05-14
公開日2019-08-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.003 Å)
主引用文献HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019
1WTE
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BU of 1wte by Molmil
Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNA
分子名称: 5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3', EcoO109IR, ...
著者Hashimoto, H, Shimizu, T, Imasaki, T, Kato, M, Shichijo, N, Kita, K, Sato, M.
登録日2004-11-22
公開日2004-12-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA
J.Biol.Chem., 280, 2005
6OXP
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BU of 6oxp by Molmil
HIV-1 Protease NL4-3 WT in Complex with UMass3
分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-({[4-(hydroxymethyl)phenyl]sulfonyl}[(2S)-2-methylbutyl]amino)propyl]carbamate, Protease NL4-3, SULFATE ION
著者Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
登録日2019-05-14
公開日2019-08-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019
6LSE
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BU of 6lse by Molmil
Crystal structure of the enterovirus 71 polymerase elongation complex (C3S6A/C3S6B form)
分子名称: Genome polyprotein, PYROPHOSPHATE 2-, RNA (35-MER), ...
著者Wang, M, Shu, B, Jing, X, Gong, P.
登録日2020-01-17
公開日2020-04-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Stringent control of the RNA-dependent RNA polymerase translocation revealed by multiple intermediate structures.
Nat Commun, 11, 2020
6OXS
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BU of 6oxs by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR-76
分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[({4-[(1R)-1-hydroxyethyl]phenyl}sulfonyl)(2-methylpropyl)amino]-1-phenylbutan-2-yl}carbamate, Protease NL4-3
著者Lockbaum, G.J, Rusere, L.N, Lee, S.K, Henes, M, Kosovrasti, K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
登録日2019-05-14
公開日2019-08-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.989 Å)
主引用文献HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope.
J.Med.Chem., 62, 2019

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件を2024-09-04に公開中

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