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PDB: 51689 件

1WEK
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Crystal structure of the conserved hypothetical protein TT1465 from Thermus thermophilus HB8
分子名称: PHOSPHATE ION, hypothetical protein TT1465
著者Kukimoto-Niino, M, Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-25
公開日2004-11-25
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8
Protein Sci., 13, 2004
7Q1B
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Crystal structure of Trypanosoma cruzi histone deacetylase DAC2 complexed with Quisinostat
分子名称: 2-[4-[[(1-methylindol-3-yl)methylamino]methyl]piperidin-1-yl]-~{N}-oxidanyl-pyrimidine-5-carboxamide, GLYCEROL, Histone deacetylase DAC2, ...
著者Marek, M, Ramos-Morales, E, Romier, C.
登録日2021-10-18
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Species-selective targeting of pathogens revealed by the atypical structure and active site of Trypanosoma cruzi histone deacetylase DAC2.
Cell Rep, 37, 2021
6I59
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Long wavelength native-SAD phasing of Sen1 helicase
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
著者Basu, S, Olieric, V, Matsugaki, N, Kawano, Y, Takashi, T, Huang, C.Y, Leonarski, F, Yamada, Y, Vera, L, Olieric, N, Basquin, J, Wojdyla, J.A, Diederichs, K, Yamamoto, M, Bunk, O, Wang, M.
登録日2018-11-13
公開日2019-03-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Long-wavelength native-SAD phasing: opportunities and challenges.
Iucrj, 6, 2019
6RLC
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Crystal structure of the PDZ tandem of syntenin in complex with fragment F13
分子名称: (2~{S})-2-[3-(4-chlorophenyl)sulfanylpropanoylamino]-3-methyl-butanoic acid, ACETATE ION, Syntenin-1
著者Feracci, M, Barral, K.
登録日2019-05-02
公開日2021-02-03
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Pharmacological inhibition of syntenin PDZ2 domain impairs breast cancer cell activities and exosome loadifing with syndecan and EpCAM cargo.
J Extracell Vesicles, 10, 2020
7Q1C
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Crystal structure of Trypanosoma cruzi histone deacetylase DAC2 complexed with a hydroxamate inhibitor
分子名称: (E)-3-dibenzofuran-4-yl-N-oxidanyl-prop-2-enamide, Histone deacetylase DAC2, POTASSIUM ION, ...
著者Ramos-Morales, E, Marek, M, Romier, C.
登録日2021-10-18
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Species-selective targeting of pathogens revealed by the atypical structure and active site of Trypanosoma cruzi histone deacetylase DAC2.
Cell Rep, 37, 2021
5DZC
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Crystal structure of the cGMP-dependent protein kinase PKG from Plasmodium Vivax - AMPPNP bound
分子名称: CHLORIDE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SODIUM ION, ...
著者Walker, J.R, El Bakkouri, M, Loppnau, P, Graslund, S, He, H, Seitova, A, Hutchinson, A, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Hui, R, Amani, M, Structural Genomics Consortium (SGC)
登録日2015-09-25
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation.
Proc.Natl.Acad.Sci.USA, 116, 2019
7PDU
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BU of 7pdu by Molmil
Pre-catalytic complex of 10-23 DNAzyme with RNA target
分子名称: 10-23 DNAzyme (33-MER), RNA target (19-MER)
著者Etzkorn, M, Borggrafe, J, Viegas, A.
登録日2021-08-07
公開日2021-12-15
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Time-resolved structural analysis of an RNA-cleaving DNA catalyst.
Nature, 601, 2022
1WTG
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Human Factor Viia-Tissue Factor Complexed with ethylsulfonamide-D-biphenylalanine-Gln-p-aminobenzamidine
分子名称: 2-(3-BIPHENYL-4-YL-2-ETHANESULFONYLAMINO-PROPIONYLAMINO)-PENTANEDIOIC ACID 5-AMIDE 1-(4-CARBAMIMIDOYL-BENZYLAMIDE), CALCIUM ION, Coagulation factor VII, ...
著者Kadono, S, Sakamoto, S, Kikuchi, Y, Oh-Eda, M, Yabuta, N, Kitazawa, K, Yoshihashi, T, Suzuki, T, Koga, T, Hattori, K, Shiraishi, T, Kodama, M, Haramura, H, Ono, Y, Esaki, T, Sato, H, Watanabe, Y, Itoh, S, Ohta, M, Kozono, T.
登録日2004-11-23
公開日2005-11-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Novel interactions of large P3 moiety and small P4 moiety in the binding of the peptide mimetic factor VIIa inhibitor
Biochem.Biophys.Res.Commun., 326, 2005
7PQS
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SRPK1 in complex with MSC2711186
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ...
著者Schroeder, M, Leiendecker, M, Knapp, S, Structural Genomics Consortium (SGC)
登録日2021-09-20
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献SRPK1 in complex with MSC2711186
To Be Published
4ZDI
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Crystal structure of the M. tuberculosis CTP synthase PyrG (apo form)
分子名称: CALCIUM ION, CTP synthase
著者Bellinzoni, M, Barilone, N, Alzari, P.M.
登録日2015-04-17
公開日2015-07-01
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.52 Å)
主引用文献Thiophenecarboxamide Derivatives Activated by EthA Kill Mycobacterium tuberculosis by Inhibiting the CTP Synthetase PyrG.
Chem.Biol., 22, 2015
6RZV
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Structure of s-Mgm1 decorating the inner surface of tubulated lipid membranes
分子名称: Putative mitochondrial dynamin protein
著者Faelber, K, Dietrich, L, Noel, J.K, Sanchez, R, Kudryashev, M, Kuelbrandt, W, Daumke, O.
登録日2019-06-13
公開日2019-07-24
最終更新日2020-11-18
実験手法ELECTRON MICROSCOPY (20.6 Å)
主引用文献Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1.
Nature, 571, 2019
7DKJ
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BU of 7dkj by Molmil
Hemagglutinin Influenza A virus (A/Okuda/1957(H2N2) bound with a neutralizing antibody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fv-clasp heavy chain, Fv-clasp light chain, ...
著者Shirouzu, M.
登録日2020-11-24
公開日2021-11-24
最終更新日2023-06-14
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Hemagglutinin Influenza A virus (A/Okuda/1957(H2N2) bound with a neutralizing antibody
To Be Published
7PVD
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Structure of the membrane soluble spike complex from the Lassa virus in a C1-symmetric map focused on the ectodomain
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G2, ...
著者Diskin, R, Katz, M.
登録日2021-10-02
公開日2021-12-29
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure and receptor recognition by the Lassa virus spike complex.
Nature, 603, 2022
7PUY
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Structure of the membrane soluble spike complex from the Lassa virus in a C3-symmetric map
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G2, ...
著者Diskin, R, Katz, M.
登録日2021-10-01
公開日2021-12-29
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure and receptor recognition by the Lassa virus spike complex.
Nature, 603, 2022
4ZQM
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Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Mycobacterium tuberculosis in the complex with XMP and NAD
分子名称: Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, XANTHOSINE-5'-MONOPHOSPHATE
著者Kim, Y, Maltseva, N, Makowska-Grzyska, M, Gu, M, Kavitha, M, Hedstrom, L, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2015-05-10
公開日2015-06-17
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.602 Å)
主引用文献Mycobacterium tuberculosis IMPDH in Complexes with Substrates, Products and Antitubercular Compounds.
Plos One, 10, 2015
1IPA
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BU of 1ipa by Molmil
CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE
分子名称: RNA 2'-O-RIBOSE METHYLTRANSFERASE
著者Nureki, O, Shirouzu, M, Hashimoto, K, Ishitani, R, Terada, T, Tamakoshi, M, Oshima, T, Chijimatsu, M, Takio, K, Vassylyev, D.G, Shibata, T, Inoue, Y, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-02
公開日2002-07-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献An enzyme with a deep trefoil knot for the active-site architecture.
Acta Crystallogr.,Sect.D, 58, 2002
5HWA
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Crystal Structure of MH-K1 chitosanase in substrate-bound form
分子名称: 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose, ACETIC ACID, CACODYLATE ION, ...
著者Suzuki, M, Saito, A, Ando, A, Miki, K, Saito, J.
登録日2016-01-29
公開日2017-02-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of the GH-46 subclass III chitosanase from Bacillus circulans MH-K1 in complex with chitotetraose
Biomed.Biochim.Acta, 1868, 2024
1IU2
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The first PDZ domain of PSD-95
分子名称: PSD-95
著者Long, J.-F, Tochio, H, Wang, P, Sala, C, Niethammer, M, Sheng, M, Zhang, M.
登録日2002-02-19
公開日2003-03-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Supramodular structure and synergistic target binding of the N-terminal tandem PDZ domains of PSD-95
J.MOL.BIOL., 327, 2003
1WDV
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Crystal structure of hypothetical protein APE2540
分子名称: hypothetical protein APE2540
著者Murayama, K, Kato-Murayama, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-18
公開日2004-11-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
Acta Crystallogr.,Sect.F, 61, 2005
7Z0U
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Crystal structure of AtWRKY18 DNA-binding domain in complex with W-box DNA
分子名称: DNA (5'-D(*CP*GP*CP*CP*TP*TP*GP*AP*CP*CP*AP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*CP*TP*GP*GP*TP*CP*AP*AP*GP*GP*CP*G)-3'), WRKY transcription factor 18, ...
著者Grzechowiak, M, Jaskolski, M, Ruszkowski, M.
登録日2022-02-23
公開日2022-06-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献New aspects of DNA recognition by group II WRKY transcription factor revealed by structural and functional study of AtWRKY18 DNA binding domain.
Int.J.Biol.Macromol., 213, 2022
6EII
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The crystal structure of CK2alpha in complex with compound 18
分子名称: (3-chloranyl-4-phenyl-phenyl)methyl-(3-phenylpropyl)azanium, ACETATE ION, Casein kinase II subunit alpha, ...
著者Brear, P, De Fusco, C, Iegre, J, Yoshida, M, Mitchell, S, Rossmann, M, Carro, L, Sore, H, Hyvonen, M, Spring, D.
登録日2017-09-19
公開日2018-02-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.935 Å)
主引用文献Second-generation CK2 alpha inhibitors targeting the alpha D pocket.
Chem Sci, 9, 2018
5EJE
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Crystal structure of E. coli Adenylate kinase G56C/T163C double mutant in complex with Ap5a
分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, COBALT (II) ION
著者Sauer, U.H, Kovermann, M, Grundstrom, C, Wolf-Watz, M, Sauer-Eriksson, A.E.
登録日2015-11-01
公開日2016-11-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for ligand binding to an enzyme by a conformational selection pathway.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7Z45
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Central part (C10) of bacteriophage SU10 capsid
分子名称: Major head protein
著者Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
登録日2022-03-03
公開日2022-08-24
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z0R
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BU of 7z0r by Molmil
AtWRKY18 DNA-binding domain
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, NITRATE ION, ...
著者Grzechowiak, M, Jaskolski, M, Ruszkowski, M.
登録日2022-02-23
公開日2022-06-22
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献New aspects of DNA recognition by group II WRKY transcription factor revealed by structural and functional study of AtWRKY18 DNA binding domain.
Int.J.Biol.Macromol., 213, 2022
3LTM
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Structure of a new family of artificial alpha helicoidal repeat proteins (alpha-Rep) based on thermostable HEAT-like repeats
分子名称: Alpha-Rep4, DODECAETHYLENE GLYCOL, GLYCEROL, ...
著者Urvoas, A, Guellouz, A, Graille, M, van Tilbeurgh, H, Desmadril, M, Minard, P.
登録日2010-02-16
公開日2010-10-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins ( alpha Rep) based on thermostable HEAT-like repeats
J.Mol.Biol., 404, 2010

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件を2024-09-04に公開中

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