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PDB: 51938 results

3DZD
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BU of 3dzd by Molmil
Crystal structure of sigma54 activator NTRC4 in the inactive state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, SODIUM ION, Transcriptional regulator (NtrC family)
Authors:Batchelor, J.D, Doucleff, M, Lee, C.-J, Matsubara, K, De Carlo, S, Heideker, J, Lamers, M.M, Pelton, J.G, Wemmer, D.E.
Deposit date:2008-07-29
Release date:2008-11-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
J.Mol.Biol., 384, 2008
3DKZ
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BU of 3dkz by Molmil
Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.
Descriptor: Thioesterase superfamily protein
Authors:Vorobiev, S.M, Su, M, Seetharaman, J, Wang, D, Ciccosanti, C, Foote, E.L, Mao, L, Xiao, R, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-26
Release date:2008-08-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis.
To be Published
7QBH
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BU of 7qbh by Molmil
Selenocarbamates as a novel prodrug-based approach towards Carbonic Anhydrase inhibition (hCA II)
Descriptor: Carbonic anhydrase 2, ZINC ION, phenylmethaneselenol
Authors:Angeli, A, Ferraroni, M.
Deposit date:2021-11-19
Release date:2022-03-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.223 Å)
Cite:Selenocarbamates As a Prodrug-Based Approach to Carbonic Anhydrase Inhibition.
Chemmedchem, 17, 2022
7Q7X
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BU of 7q7x by Molmil
Crystal structure of the methyltransferase-ribozyme 1 (with 1-methyl-adenosine)
Descriptor: GUANINE, MAGNESIUM ION, RNA 1, ...
Authors:Mieczkowski, M, Hoebartner, C.
Deposit date:2021-11-09
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
7Q80
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BU of 7q80 by Molmil
Crystal structure of the methyltransferase-ribozyme 1, no Magnesium condition (with 1-methyl-adenosine)
Descriptor: GUANINE, RNA 1, RNA 2, ...
Authors:Mieczkowski, M, Hoebartner, C.
Deposit date:2021-11-09
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
7QHY
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BU of 7qhy by Molmil
Structure of a Kluyveromyces lactis protein involved in RNA decay
Descriptor: GLYCEROL, Nonsense-mediated decay protein 4,Nonsense-mediated decay protein 4,Nonsense mediated mRNA decay protein 4 (Nmd4), SULFATE ION
Authors:Barbarin-Bocahu, I, Graille, M.
Deposit date:2021-12-14
Release date:2022-03-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The X-ray crystallography phase problem solved thanks to AlphaFold and RoseTTAFold models: a case-study report.
Acta Crystallogr D Struct Biol, 78, 2022
7Q82
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BU of 7q82 by Molmil
Crystal structure of the methyltransferase-ribozyme 1, Thallium derivative (with 1-methyl-adenosine)
Descriptor: GUANINE, MAGNESIUM ION, RNA 1, ...
Authors:Mieczkowski, M, Hoebartner, C.
Deposit date:2021-11-09
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
7Q7Y
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BU of 7q7y by Molmil
Crystal structure of the methyltransferase-ribozyme 1 (1-benzyl-adenosine derivative)
Descriptor: GUANINE, MAGNESIUM ION, RNA 1, ...
Authors:Mieczkowski, M, Hoebartner, C.
Deposit date:2021-11-09
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
8FH4
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BU of 8fh4 by Molmil
Crystal structure of HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with 3-[6-chloro-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undec-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile
Descriptor: (3P)-3-[6-chloro-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undecan-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile, Mitogen-activated protein kinase kinase kinase kinase 1, SULFATE ION
Authors:McTigue, M, Johnson, E, Cronin, C.
Deposit date:2022-12-13
Release date:2023-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.827 Å)
Cite:Design and Synthesis of Functionally Active 5-Amino-6-Aryl Pyrrolopyrimidine Inhibitors of Hematopoietic Progenitor Kinase 1.
J.Med.Chem., 66, 2023
8FKO
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BU of 8fko by Molmil
Crystal structure of HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with 3-{4-[(2S,5R)-5-Amino-2-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile
Descriptor: (3P)-3-{4-[(2S,5R)-5-amino-2-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile, Mitogen-activated protein kinase kinase kinase kinase 1
Authors:McTigue, M, Johnson, E, Cronin, C.
Deposit date:2022-12-21
Release date:2023-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Design and Synthesis of Functionally Active 5-Amino-6-Aryl Pyrrolopyrimidine Inhibitors of Hematopoietic Progenitor Kinase 1.
J.Med.Chem., 66, 2023
7QWQ
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BU of 7qwq by Molmil
Ternary complex of ribosome nascent chain with SRP and NAC
Descriptor: 28S rRNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Jomaa, A, Gamerdinger, M, Hsieh, H, Wallisch, A, Chandrasekaran, V, Ulusoy, Z, Scaiola, A, Hegde, R, Shan, S, Ban, N, Deuerling, E.
Deposit date:2022-01-25
Release date:2022-03-16
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Mechanism of signal sequence handover from NAC to SRP on ribosomes during ER-protein targeting.
Science, 375, 2022
7Q7Z
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BU of 7q7z by Molmil
Crystal structure of the methyltransferase-ribozyme 1 (with 1-benzylamine-adenosine)
Descriptor: GUANINE, MAGNESIUM ION, RNA 1, ...
Authors:Mieczkowski, M, Hoebartner, C.
Deposit date:2021-11-09
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
7Q81
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BU of 7q81 by Molmil
Crystal structure of the methyltransferase-ribozyme 1, 2'-Selenomethyl-Uridine modified (with 1-methyl-adenosine)
Descriptor: GUANINE, MAGNESIUM ION, RNA 2, ...
Authors:Mieczkowski, M, Hoebartner, C.
Deposit date:2021-11-09
Release date:2022-03-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
1ZSN
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BU of 1zsn by Molmil
Synthesis, Biological Activity, and X-Ray Crystal Structural Analysis of Diaryl Ether Inhibitors of Malarial Enoyl ACP Reductase. Part 1:4'-Substituted Triclosan Derivatives
Descriptor: 5-CHLORO-2-(2-CHLORO-4-NITROPHENOXY)PHENOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, enoyl-acyl carrier reductase
Authors:Freundlich, J.S, Anderson, J.W, Sarantakis, D, Shieh, H.M, Yu, M, Lucumi, E, Kuo, M, Schiehser, G.A, Jacobus, D.P, Jacobs Jr, W.R, Fidock, D.A, Sacchettini, J.C.
Deposit date:2005-05-24
Release date:2006-05-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.992 Å)
Cite:Synthesis, biological activity, and X-ray crystal structural analysis of diaryl ether inhibitors of malarial enoyl acyl carrier protein reductase. Part 1: 4'-Substituted triclosan derivatives.
Bioorg.Med.Chem.Lett., 15, 2005
8FJZ
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BU of 8fjz by Molmil
Crystal structure of HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with 3-{4-[(3R,5S)-3-Amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile
Descriptor: (3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile, Mitogen-activated protein kinase kinase kinase kinase 1
Authors:McTigue, M, Johnson, E, Cronin, C.
Deposit date:2022-12-20
Release date:2023-04-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Design and Synthesis of Functionally Active 5-Amino-6-Aryl Pyrrolopyrimidine Inhibitors of Hematopoietic Progenitor Kinase 1.
J.Med.Chem., 66, 2023
3DXS
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BU of 3dxs by Molmil
Crystal structure of a copper binding domain from HMA7, a P-type ATPase
Descriptor: Copper-transporting ATPase RAN1, LITHIUM ION, ZINC ION
Authors:Zimmermann, M, Xiao, Z, Clarke, O.B, Gulbis, J.M, Wedd, A.G.
Deposit date:2008-07-25
Release date:2009-08-11
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Metal binding affinities of Arabidopsis zinc and copper transporters: selectivities match the relative, but not the absolute, affinities of their amino-terminal domains.
Biochemistry, 48, 2009
7QDW
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BU of 7qdw by Molmil
Solution structure of the complex between plasmodial ZNHIT3 and NUFIP1 proteins
Descriptor: NUFIP1 domain-containing protein, Zinc finger protein, putative
Authors:Chagot, M.E, Quinternet, M.
Deposit date:2021-11-30
Release date:2022-03-30
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural Analysis of the Plasmodial Proteins ZNHIT3 and NUFIP1 Provides Insights into the Selectivity of a Conserved Interaction.
Biochemistry, 61, 2022
3DTR
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BU of 3dtr by Molmil
E(L212)Q, L(L227)F double mutant structure of photosynthetic reaction center from Rhodobacter sphaeroides
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Pokkuluri, P.R, Schiffer, M.
Deposit date:2008-07-15
Release date:2009-06-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Restoring proton transfer in L212Q mutant of photosynthetic reaction center
To be Published
7QTO
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BU of 7qto by Molmil
Structural biology of the NS1 avian influenza protein subversion on the Scribble cell polarity module
Descriptor: Non-structural protein 1, Protein scribble homolog
Authors:Javorsky, A, Humbert, P.O, Kvansakul, M.
Deposit date:2022-01-15
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Basis of the Avian Influenza NS1 Protein Interactions with the Cell Polarity Regulator Scribble.
Viruses, 14, 2022
7QTP
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BU of 7qtp by Molmil
Structural biology of the NS1 avian influenza protein subversion on the Scribble cell polarity module
Descriptor: Non-structural protein 1, Protein scribble homolog
Authors:Javorsky, A, Humbert, P.O, Kvansakul, M.
Deposit date:2022-01-15
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis of the Avian Influenza NS1 Protein Interactions with the Cell Polarity Regulator Scribble.
Viruses, 14, 2022
3DV3
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BU of 3dv3 by Molmil
MEK1 with PF-04622664 Bound
Descriptor: 3,4-difluoro-2-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)-5-[(2-hydroxyethoxy)methyl]benzamide, ADENOSINE-5'-TRIPHOSPHATE, Dual specificity mitogen-activated protein kinase kinase 1, ...
Authors:Kazmirski, S.L, Kothe, M, Ding, Y.-H.
Deposit date:2008-07-18
Release date:2009-07-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Beyond the MEK-pocket: can current MEK kinase inhibitors be utilized to synthesize novel type III NCKIs? Does the MEK-pocket exist in kinases other than MEK?
Bioorg.Med.Chem.Lett., 19, 2009
7QBP
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BU of 7qbp by Molmil
Crystal structure of R2-like ligand-binding oxidase from Saccharopolyspora Erythraea
Descriptor: FE (III) ION, MANGANESE (III) ION, PALMITIC ACID, ...
Authors:Srinivas, V, Diamanti, R, Lebrette, H, Hogbom, M.
Deposit date:2021-11-19
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.
Febs Lett., 596, 2022
7QBK
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BU of 7qbk by Molmil
Crystal structure of a second homolog of R2-like ligand-binding oxidase in Sulfolobus acidocaldarius (SaR2loxII)
Descriptor: FE (III) ION, MANGANESE (III) ION, R2-like ligand-binding oxidase (homolog II) from Sulfolobus acidocaldarius
Authors:Lebrette, H, Diamanti, R, Srinivas, V, Hogbom, M.
Deposit date:2021-11-19
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.
Febs Lett., 596, 2022
7QTU
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BU of 7qtu by Molmil
Structural biology of the NS1 avian influenza protein subversion on the Scribble cell polarity module
Descriptor: Non-structural protein 1, Protein scribble homolog
Authors:Javorsky, A, Humbert, P.O, Kvansakul, M.
Deposit date:2022-01-16
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Structural Basis of the Avian Influenza NS1 Protein Interactions with the Cell Polarity Regulator Scribble.
Viruses, 14, 2022
7PN1
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BU of 7pn1 by Molmil
Apo HsPepT1 in the outward facing open conformation
Descriptor: Solute carrier family 15 member 1
Authors:Killer, M, Wald, J, Pieprzyk, J, Marlovits, T.C, Loew, C.
Deposit date:2021-09-04
Release date:2021-10-20
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural snapshots of human PepT1 and PepT2 reveal mechanistic insights into substrate and drug transport across epithelial membranes.
Sci Adv, 7, 2021

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