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PDB: 141 results

7SHJ
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BU of 7shj by Molmil
Crystal structure of Acinetobacter baumannii ZnuA in the metal-free state
Descriptor: SODIUM ION, Zinc ABC transporter solute-binding protein
Authors:Luo, Z, McDevitt, C.A, Kobe, B.
Deposit date:2021-10-09
Release date:2022-10-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Structural and biochemical characterization of Acinetobacter baumannii ZnuA.
J.Inorg.Biochem., 231, 2022
4UTP
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BU of 4utp by Molmil
Crystal structure of pneumococcal surface antigen PsaA in the Cd- bound, closed state
Descriptor: CADMIUM ION, MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN
Authors:Luo, Z, Counago, R.M, Maher, M, Kobe, B.
Deposit date:2014-07-22
Release date:2014-08-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Dysregulation of transition metal ion homeostasis is the molecular basis for cadmium toxicity in Streptococcus pneumoniae.
Nat Commun, 6, 2015
4UTO
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BU of 4uto by Molmil
Crystal structure of pneumococcal surface antigen PsaA D280N in the Cd-bound, open state
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN
Authors:Luo, Z, Counago, R.M, Maher, M, Kobe, B.
Deposit date:2014-07-22
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Dysregulation of transition metal ion homeostasis is the molecular basis for cadmium toxicity in Streptococcus pneumoniae.
Nat Commun, 6, 2015
5HN2
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BU of 5hn2 by Molmil
Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex
Descriptor: RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), SODIUM ION
Authors:Luo, Z.P, Sheng, J.
Deposit date:2016-01-18
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res., 44, 2016
5HNJ
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Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex
Descriptor: RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), SODIUM ION
Authors:Luo, Z.P, Sheng, J.
Deposit date:2016-01-18
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res., 44, 2016
6LI0
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BU of 6li0 by Molmil
Crystal structure of GPR52 in complex with agonist c17
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CITRATE ANION, Chimera of G-protein coupled receptor 52 and Flavodoxin, ...
Authors:Luo, Z.P, Lin, X, Xu, F, Han, G.W.
Deposit date:2019-12-10
Release date:2020-02-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of ligand recognition and self-activation of orphan GPR52.
Nature, 579, 2020
6LI2
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BU of 6li2 by Molmil
Crystal structure of GPR52 ligand free form with rubredoxin fusion
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Chimera of G-protein coupled receptor 52 and Rubredoxin, DI(HYDROXYETHYL)ETHER, ...
Authors:Luo, Z.P, Lin, X, Xu, F, Han, G.W.
Deposit date:2019-12-10
Release date:2020-02-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of ligand recognition and self-activation of orphan GPR52.
Nature, 579, 2020
6VZB
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BU of 6vzb by Molmil
Crystal structure of cytochrome P450 NasF5053 S284A-V288A mutant variant from Streptomyces sp. NRRL F-5053 in the cyclo-L-Trp-L-Pro-bound state
Descriptor: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
Authors:Luo, Z, Jia, X, Sun, C, Qu, X, Kobe, B.
Deposit date:2020-02-28
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.
Nat Commun, 11, 2020
6VZA
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BU of 6vza by Molmil
Crystal structure of cytochrome P450 NasF5053 Q65I-A86G mutant variant from Streptomyces sp. NRRL F-5053 in the cyclo-L-Trp-L-Pro-bound state
Descriptor: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, CALCIUM ION, CHLORIDE ION, ...
Authors:Luo, Z, Jia, X, Sun, C, Qu, X, Kobe, B.
Deposit date:2020-02-28
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.
Nat Commun, 11, 2020
6VXV
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BU of 6vxv by Molmil
Crystal structure of cyclo-L-Trp-L-Pro-bound cytochrome P450 NasF5053 from Streptomyces sp. NRRL F-5053
Descriptor: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Luo, Z, Jia, X, Sun, C, Qu, X, Kobe, B.
Deposit date:2020-02-24
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.
Nat Commun, 11, 2020
6W0S
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BU of 6w0s by Molmil
Crystal structure of substrate free cytochrome P450 NasF5053 from Streptomyces sp. NRRL F-5053
Descriptor: BROMIDE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Luo, Z, Jia, X, Sun, C, Qu, X, Kobe, B.
Deposit date:2020-03-02
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.
Nat Commun, 11, 2020
8STB
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BU of 8stb by Molmil
The structure of abxF, an enzyme catalyzing the formation of the chiral spiroketal of an anthrabenzoxocinone antibiotic, (-)-ABX
Descriptor: CHLORIDE ION, GLYCEROL, Glyoxalase, ...
Authors:Luo, Z, Jia, X, Yan, X, Qu, X, Kobe, B.
Deposit date:2023-05-09
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:The crystal structure of abxF, an enzyme catalyzing the formation of the chiral spiroketal of an anthrabenzoxocinone antibiotic, (-)-ABX.
To Be Published
6AQV
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BU of 6aqv by Molmil
Crystal Structure of Z-DNA with 6-fold Twinning_Z3B
Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
Authors:Luo, Z, Dauter, Z, Gilski, M.
Deposit date:2017-08-21
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA.
Acta Crystallogr D Struct Biol, 73, 2017
6AQT
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BU of 6aqt by Molmil
Crystal Structure of Z-DNA with 6-fold Twinning_Z3A
Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
Authors:Luo, Z, Dauter, Z, Gilski, M.
Deposit date:2017-08-21
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA.
Acta Crystallogr D Struct Biol, 73, 2017
6AQW
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BU of 6aqw by Molmil
Crystal Structure of Z-DNA with 6-fold Twinning_Z4A
Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
Authors:Luo, Z, Dauter, Z, Gilski, M.
Deposit date:2017-08-21
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA.
Acta Crystallogr D Struct Biol, 73, 2017
8H7J
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BU of 8h7j by Molmil
The crystal structure of CD163 SRCR5-9
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Scavenger receptor cysteine-rich type 1 protein M130, ...
Authors:Luo, Z.P, Li, R, Ma, H.F.
Deposit date:2022-10-20
Release date:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of CD163 SRCR5-9
To Be Published
6BST
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BU of 6bst by Molmil
CRYSTAL STRUCTURE OF Z-DNA WITH UNTYPICALLY COORDINATED CA2+ ION
Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), N~1~-(3-azaniumylpropyl)butane-1,4-diaminium
Authors:LUO, Z, DAUTER, Z.
Deposit date:2017-12-04
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The crystal structure of Z-DNA with untypically coordinated Ca
J. Biol. Inorg. Chem., 23, 2018
6AQX
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BU of 6aqx by Molmil
Crystal Structure of Z-DNA with 6-fold Twinning_Z4B
Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
Authors:Luo, Z, Dauter, Z, Gilski, M.
Deposit date:2017-08-21
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA.
Acta Crystallogr D Struct Biol, 73, 2017
5HNQ
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BU of 5hnq by Molmil
Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex
Descriptor: 5fC modified RNA
Authors:Luo, Z, Sheng, J.
Deposit date:2016-01-18
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Base pairing and structural insights into the 5-formylcytosine in RNA duplex.
Nucleic Acids Res., 44, 2016
6CSL
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BU of 6csl by Molmil
Pneumococcal PhtD protein 269-339 fragment with bound Zn(II)
Descriptor: Histidine triad protein D, ZINC ION
Authors:Luo, Z, Pederick, V.G, Paton, J.C, McDevitt, C.A, Kobe, B.
Deposit date:2018-03-20
Release date:2018-06-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.921 Å)
Cite:Structural characterisation of the HT3 motif of the polyhistidine triad protein D from Streptococcus pneumoniae.
FEBS Lett., 592, 2018
7F5H
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BU of 7f5h by Molmil
The crystal structure of RBD-Nanobody complex, DL28 (SC4)
Descriptor: GLYCEROL, Nanobody DL28, PHOSPHATE ION, ...
Authors:Luo, Z.P, Li, T, Lai, Y, Zhou, Y, Tan, J, Li, D.
Deposit date:2021-06-22
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Characterization of a Neutralizing Nanobody With Broad Activity Against SARS-CoV-2 Variants.
Front Microbiol, 13, 2022
7LM5
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BU of 7lm5 by Molmil
Crystal structure of the Zn(II)-bound AdcAII H65A mutant variant of Streptococcus pneumoniae
Descriptor: Adhesion protein, CHLORIDE ION, SODIUM ION, ...
Authors:Luo, Z, Zupan, M, McDevitt, C.A, Kobe, B.
Deposit date:2021-02-05
Release date:2021-09-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformation of the Solute-Binding Protein AdcAII Influences Zinc Uptake in Streptococcus pneumoniae .
Front Cell Infect Microbiol, 11, 2021
6NSI
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BU of 6nsi by Molmil
Crystal structure of Fe(III)-bound YtgA from Chlamydia trachomatis
Descriptor: CALCIUM ION, FE (III) ION, Manganese-binding protein, ...
Authors:Luo, Z, Campbell, R, Begg, S.L, Kobe, B, McDevitt, C.A.
Deposit date:2019-01-24
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.00006342 Å)
Cite:Structure and Metal Binding Properties of Chlamydia trachomatis YtgA.
J.Bacteriol., 202, 2019
7JJA
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BU of 7jja by Molmil
Crystal structure of the ZinT-like domain of Streptococcus pneumoniae AdcA in the apo form
Descriptor: SODIUM ION, Zinc-binding lipoprotein AdcA, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
Authors:Luo, Z, More, J.R, Kobe, B, McDevitt, C.A.
Deposit date:2020-07-24
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:A Trap-Door Mechanism for Zinc Acquisition by Streptococcus pneumoniae AdcA.
Mbio, 12, 2021
7JJB
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BU of 7jjb by Molmil
Crystal structure of Zn(II)-bound ZinT-like domain of Streptococcus pneumoniae AdcA
Descriptor: MAGNESIUM ION, SODIUM ION, ZINC ION, ...
Authors:Luo, Z, More, J.R, Kobe, B, McDevitt, C.A.
Deposit date:2020-07-24
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:A Trap-Door Mechanism for Zinc Acquisition by Streptococcus pneumoniae AdcA.
Mbio, 12, 2021

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