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PDB: 157 results

7XOE
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Cryo-EM structure of S glycoprotein encoded by the Covid-19 mRNA vaccine candidate RQ3013 (Prefusion state)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,peptide
Authors:Wu, Z, Yu, Z, Tan, S, Lu, J, Lu, G, Lin, J.
Deposit date:2022-05-01
Release date:2024-02-14
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Preclinical evaluation of RQ3013, a broad-spectrum mRNA vaccine against SARS-CoV-2 variants.
Sci Bull (Beijing), 68, 2023
7XOG
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Cryo-EM structure of S glycoprotein encoded by the Covid-19 mRNA vaccine candidate RQ3013 (Postfusion state)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,peptide, ...
Authors:Wu, Z, Yu, Z, Tan, S, Lu, J, Lu, G, Lin, J.
Deposit date:2022-05-01
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Preclinical evaluation of RQ3013, a broad-spectrum mRNA vaccine against SARS-CoV-2 variants.
Sci Bull (Beijing), 68, 2023
6LSA
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Complex structure of bovine herpesvirus 1 glycoprotein D and bovine nectin-1 IgV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein D, ...
Authors:Yue, D, Chen, Z.J, Yang, F.L, Ye, F, Lin, S, Cheng, Y.W, Wang, J.C, Chen, Z.M, Lin, X, Yang, J, Chen, H, Zhang, Z.L, You, Y, Sun, H.L, Wen, A, Wang, L.L, Zheng, Y, Cao, Y, Li, Y.H, Lu, G.W.
Deposit date:2020-01-17
Release date:2020-06-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Crystal structure of bovine herpesvirus 1 glycoprotein D bound to nectin-1 reveals the basis for its low-affinity binding to the receptor.
Sci Adv, 6, 2020
6LS9
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Crystal structure of bovine herpesvirus 1 glycoprotein D
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein D
Authors:Yue, D, Chen, Z.J, Yang, F.L, Ye, F, Lin, S, Cheng, Y.W, Wang, J.C, Chen, Z.M, Lin, X, Yang, J, Chen, H, Zhang, Z.L, You, Y, Sun, H.L, Wen, A, Wang, L.L, Zheng, Y, Cao, Y, Li, Y.H, Lu, G.W.
Deposit date:2020-01-17
Release date:2020-06-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Crystal structure of bovine herpesvirus 1 glycoprotein D bound to nectin-1 reveals the basis for its low-affinity binding to the receptor.
Sci Adv, 6, 2020
7XBK
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Structure and mechanism of a mitochondrial AAA+ disaggregase CLPB
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Isoform 2 of Caseinolytic peptidase B protein homolog, MAGNESIUM ION, ...
Authors:Wu, D, Liu, Y, Dai, Y, Wang, G, Lu, G, Chen, Y, Li, N, Lin, J, Gao, N.
Deposit date:2022-03-21
Release date:2023-01-25
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Comprehensive structural characterization of the human AAA+ disaggregase CLPB in the apo- and substrate-bound states reveals a unique mode of action driven by oligomerization.
Plos Biol., 21, 2023
7XK0
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Cryo-EM strucrture of Oryza sativa plastid glycyl-tRNA synthetase in complex with tRNA (tRNA locked state)
Descriptor: Glycine--tRNA ligase, tRNA(gly)
Authors:Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
Deposit date:2022-04-19
Release date:2023-05-03
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
7XJZ
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Cryo-EM strucrture of Oryza sativa plastid glycyl-tRNA synthetase in complex with tRNA (tRNA binding state)
Descriptor: Glycine--tRNA ligase, tRNA(gly)
Authors:Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
Deposit date:2022-04-19
Release date:2023-05-03
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
7XK1
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Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (both in tRNA binding states)
Descriptor: Glycine--tRNA ligase, tRNA(gly)
Authors:Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
Deposit date:2022-04-19
Release date:2023-05-03
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
8Y38
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Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Li, Y, Lu, G, Li, J, Pei, X, Lin, J.
Deposit date:2024-01-28
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Synthetic macrolides overcoming MLS B K-resistant pathogens.
Cell Discov, 10, 2024
8Y36
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cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.
Descriptor: 23S ribosomal RNA, 5S ribosomal RNA, 7-[4-[3-[[(1~{S},2~{R},5~{R},6~{S},7~{S},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-6-yl]oxycarbonylamino]propoxy]but-1-ynyl]-1-methyl-4-oxidanylidene-quinoline-3-carboxylic acid, ...
Authors:Li, Y, Lu, G, Li, J, Pei, X, Lin, J.
Deposit date:2024-01-28
Release date:2024-07-24
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:Synthetic macrolides overcoming MLS B K-resistant pathogens.
Cell Discov, 10, 2024
8Y37
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BU of 8y37 by Molmil
Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
Descriptor: 23S ribosomal RNA, 5S ribosomal RNA, 7-[4-[3-[[(1~{S},2~{R},5~{R},6~{S},7~{S},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-9-methoxy-1,5,7,9,11,13-hexamethyl-4,12,16-tris(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-6-yl]oxycarbonylamino]propoxy]but-1-ynyl]-1-methyl-4-oxidanylidene-quinoline-3-carboxylic acid, ...
Authors:Li, Y, Lu, G, Li, J, Pei, X, Lin, J.
Deposit date:2024-01-28
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Synthetic macrolides overcoming MLS B K-resistant pathogens.
Cell Discov, 10, 2024
8Y39
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BU of 8y39 by Molmil
cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Li, Y, Lu, G, Li, J, Pei, X, Lin, J.
Deposit date:2024-01-28
Release date:2024-07-24
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Synthetic macrolides overcoming MLS B K-resistant pathogens.
Cell Discov, 10, 2024
4EWJ
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BU of 4ewj by Molmil
structure of the enloase from Streptococcus suis serotype 2
Descriptor: Enolase 2
Authors:Lu, Q, Lu, H, Qi, J, Lu, G, Gao, G.F.
Deposit date:2012-04-27
Release date:2012-10-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.403 Å)
Cite:An octamer of enolase from Streptococcus suis.
Protein Cell, 3, 2012
7XC5
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BU of 7xc5 by Molmil
Crystal structure of the ANK domain of CLPB
Descriptor: Isoform 2 of Caseinolytic peptidase B protein homolog
Authors:Liu, Y, Wu, D, Lu, G, Gao, N, Lin, J.
Deposit date:2022-03-23
Release date:2023-01-18
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Comprehensive structural characterization of the human AAA+ disaggregase CLPB in the apo- and substrate-bound states reveals a unique mode of action driven by oligomerization.
Plos Biol., 21, 2023
7XJY
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BU of 7xjy by Molmil
Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase (apo form)
Descriptor: Glycine--tRNA ligase
Authors:Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J.
Deposit date:2022-04-19
Release date:2023-05-03
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.
Nucleic Acids Res., 51, 2023
3U1M
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BU of 3u1m by Molmil
Structure of the mRNA splicing complex component Cwc2
Descriptor: Pre-mRNA-splicing factor CWC2, ZINC ION
Authors:Lu, P, Lu, G, Yan, C, Wang, L, Li, W, Yin, P.
Deposit date:2011-09-30
Release date:2011-11-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the mRNA splicing complex component Cwc2: insights into RNA recognition
Biochem.J., 441, 2012
3U1L
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BU of 3u1l by Molmil
Structure of the mRNA splicing complex component Cwc2
Descriptor: Pre-mRNA-splicing factor CWC2, ZINC ION
Authors:Lu, P, Lu, G, Yan, C, Wang, L, Li, W, Yin, P.
Deposit date:2011-09-30
Release date:2011-11-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure of the mRNA splicing complex component Cwc2: insights into RNA recognition
Biochem.J., 441, 2012
4NFB
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BU of 4nfb by Molmil
Structure of paired immunoglobulin-like type 2 receptor (PILR )
Descriptor: Paired immunoglobulin-like type 2 receptor alpha
Authors:Lu, Q, Lu, G, Qi, J, Li, Y, Zhang, Y, Wang, H, Fan, Z, Yan, J, Gao, G.
Deposit date:2013-10-31
Release date:2014-05-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:PILR alpha and PILR beta have a siglec fold and provide the basis of binding to sialic acid
Proc.Natl.Acad.Sci.USA, 111, 2014
4NFC
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Structure of paired immunoglobulin-like type 2 receptor (PILR )
Descriptor: Paired immunoglobulin-like type 2 receptor beta
Authors:Lu, Q, Lu, G, Qi, J, Li, Y, Zhang, Y, Wang, H, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-10-31
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:PILR alpha and PILR beta have a siglec fold and provide the basis of binding to sialic acid
Proc.Natl.Acad.Sci.USA, 111, 2014
4NFD
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BU of 4nfd by Molmil
Structure of PILR L108W mutant in complex with sialic acid
Descriptor: N-acetyl-alpha-neuraminic acid, Paired immunoglobulin-like type 2 receptor beta
Authors:Lu, Q, Lu, G, Qi, J, Li, Y, Zhang, Y, Wang, H, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-10-31
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.708 Å)
Cite:PILR alpha and PILR beta have a siglec fold and provide the basis of binding to sialic acid
Proc.Natl.Acad.Sci.USA, 111, 2014
7XOF
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BU of 7xof by Molmil
Crystal structure of Oryza sativa plastid glycyl-tRNA synthetase
Descriptor: Glycine--tRNA ligase
Authors:Yu, Z, Lu, G, Li, J.
Deposit date:2022-05-01
Release date:2023-05-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Crystal structure of Oryza sativa plastid glycyl-tRNA synthetase
To be published
5DO2
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BU of 5do2 by Molmil
Complex structure of MERS-RBD bound with 4C2 antibody
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4C2 heavy chain, 4C2 light chain, ...
Authors:Li, Y, Wan, Y, Liu, P, Zhao, J, Lu, G, Qi, J, Wang, Q, Lu, X, Wu, Y, Liu, W, Yuen, K.Y, Perlman, S, Gao, G.F, Yan, J.
Deposit date:2015-09-10
Release date:2015-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.409 Å)
Cite:A humanized neutralizing antibody against MERS-CoV targeting the receptor-binding domain of the spike protein.
Cell Res., 25, 2015
3BUE
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BU of 3bue by Molmil
Crystal structure of the C-terminal domain hexamer of ArgR from Mycobacterium tuberculosis
Descriptor: Arginine repressor ArgR
Authors:Cherney, L.T, Cherney, M.M, Garen, C.R, Lu, G.J, James, M.N.G, TB Structural Genomics Consortium (TBSGC)
Deposit date:2008-01-02
Release date:2008-01-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of the C-terminal domain of the arginine repressor protein from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.D, 64, 2008
1C40
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BAR-HEADED GOOSE HEMOGLOBIN (AQUOMET FORM)
Descriptor: PROTEIN (HEMOGLOBIN (ALPHA CHAIN)), PROTEIN (HEMOGLOBIN (BETA CHAIN)), PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, S, Liu, X, Jing, H, Hua, Z, Zhang, R, Lu, G.
Deposit date:1999-08-03
Release date:1999-08-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Avian haemoglobins and structural basis of high affinity for oxygen: structure of bar-headed goose aquomet haemoglobin.
Acta Crystallogr.,Sect.D, 57, 2001
7YTU
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BU of 7ytu by Molmil
Crystal structure of vaccinia virus G3/L5 sub-complex (SeMet-labeled, P31 space group)
Descriptor: Protein G3, Protein L5
Authors:Lin, S, Yue, D, Lu, G.W.
Deposit date:2022-08-16
Release date:2023-02-08
Method:X-RAY DIFFRACTION (1.504 Å)
Cite:Crystal structure of vaccinia virus G3/L5 sub-complex reveals a novel fold with extended inter-molecule interactions conserved among orthopoxviruses.
Emerg Microbes Infect, 12, 2023

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PDB entries from 2024-10-30

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