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PDB: 665 件
5W3O
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BU of 5w3o by Molmil
CryoEM structure of rhinovirus B14 in complex with C5 Fab (33 degrees Celsius, molar ratio 1:3, empty particle)
分子名称: C5 antibody variable heavy domain, C5 antibody variable light domain, viral protein 1, ...
著者Liu, Y, Dong, Y, Rossmann, M.G.
登録日2017-06-08
公開日2017-07-12
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献Antibody-induced uncoating of human rhinovirus B14.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5W3L
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BU of 5w3l by Molmil
CryoEM structure of rhinovirus B14 in complex with C5 Fab (4 degrees Celsius, molar ratio 1:3, full particle)
分子名称: C5 antibody variable heavy domain, C5 antibody variable light domain, viral protein 1, ...
著者Liu, Y, Dong, Y, Rossmann, M.G.
登録日2017-06-08
公開日2017-07-12
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (2.71 Å)
主引用文献Antibody-induced uncoating of human rhinovirus B14.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5W3E
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BU of 5w3e by Molmil
CryoEM structure of rhinovirus B14 in complex with C5 Fab (33 degrees Celsius, molar ratio 1:3, full particle)
分子名称: C5 antibody variable heavy domain, C5 antibody variable light domain, viral protein 1, ...
著者Liu, Y, Dong, Y, Rossmann, M.G.
登録日2017-06-07
公開日2017-07-12
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (2.53 Å)
主引用文献Antibody-induced uncoating of human rhinovirus B14.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5YVX
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Crystal structure of SDG8 CW domain in complex with H3K4me1 peptide
分子名称: H3K4me1, Histone-lysine N-methyltransferase ASHH2, ZINC ION
著者Liu, Y, Huang, Y.
登録日2017-11-27
公開日2018-03-14
最終更新日2018-05-09
実験手法X-RAY DIFFRACTION (1.591 Å)
主引用文献Uncovering the mechanistic basis for specific recognition of monomethylated H3K4 by the CW domain ofArabidopsishistone methyltransferase SDG8.
J. Biol. Chem., 293, 2018
7DZY
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BU of 7dzy by Molmil
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 2490
分子名称: Fab Heavy chain of enhancing antibody 2490, Fab light chain of enhancing antibody 2490, Spike glycoprotein
著者Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日2021-01-26
公開日2021-06-02
最終更新日2023-08-02
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
7DZX
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BU of 7dzx by Molmil
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 8D2
分子名称: Fab Heavy chain of enhancing antibody, Fab light chain of enhancing antibody, Spike glycoprotein
著者Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日2021-01-26
公開日2021-06-02
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.53 Å)
主引用文献An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
7DZW
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BU of 7dzw by Molmil
Apo spike protein from SARS-CoV2
分子名称: Spike glycoprotein
著者Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H.
登録日2021-01-26
公開日2021-06-02
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies.
Cell, 184, 2021
3VFN
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BU of 3vfn by Molmil
crystal structure of HLA B*3508LPEP151A, HLA mutant Ala151
分子名称: Beta-2-microglobulin, LPEP peptide from EBV, LPEPLPQGQLTAY, ...
著者Liu, Y, Rossjohn, J, Gras, S.
登録日2012-01-10
公開日2012-03-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The Energetic Basis Underpinning T-cell Receptor Recognition of a Super-bulged Peptide Bound to a Major Histocompatibility Complex Class I Molecule.
J.Biol.Chem., 287, 2012
6JPI
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BU of 6jpi by Molmil
Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
分子名称: DNA (28-MER), HTH cro/C1-type domain-containing protein
著者Liu, Y, Gao, Z, Zhang, H, Dong, Y.
登録日2019-03-27
公開日2020-04-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.143 Å)
主引用文献Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
To Be Published
6LB3
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Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa
分子名称: DNA (5'-D(P*AP*CP*CP*CP*TP*TP*AP*AP*CP*GP*TP*TP*AP*AP*GP*CP*GP*T)-3'), DNA (5'-D(P*AP*CP*GP*CP*TP*TP*AP*AP*CP*GP*TP*TP*AP*AP*GP*GP*GP*T)-3'), HTH cro/C1-type domain-containing protein, ...
著者Liu, Y, Zhang, H, Gao, Z, Dong, Y.
登録日2019-11-13
公開日2020-11-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.497 Å)
主引用文献Crystal structure of PA4674 in complex with its operator DNA (18bp) from Pseudomonas aeruginosa
To Be Published
7XV6
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BU of 7xv6 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain with C-terminal extension (DBD-CTE) Homodimer Bound to DR1 Response Element
分子名称: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), NR2C2 protein, ...
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XVA
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BU of 7xva by Molmil
Crystal structure of the Human TR4 Ligand Binding Domain in complex with the JAZF1 corepressor fragment
分子名称: Juxtaposed with another zinc finger protein 1, Nuclear receptor subfamily 2 group C member 2
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.856 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XV9
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BU of 7xv9 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain
分子名称: Nuclear receptor subfamily 2 group C member 2, ZINC ION
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XV8
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BU of 7xv8 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain Homodimer Bound to DR1 Response Element
分子名称: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), Nuclear receptor subfamily 2 group C member 2, ...
著者Liu, Y, Chen, Z.
登録日2022-05-21
公開日2022-12-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.199 Å)
主引用文献Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
8H43
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BU of 8h43 by Molmil
Crystal structure of PHF1 Tudor domain in complex with hit 1
分子名称: 2-[(3S)-piperidin-3-yl]-1,3-benzoxazole, PHD finger protein 1
著者Liu, Y, Ruan, K.
登録日2022-10-10
公開日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of PHF1 Tudor domain in complex with hit 1
To be published
8HNI
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BU of 8hni by Molmil
hnRNP A2/B1 RRMs in complex with telomeric DNA
分子名称: DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*T)-3'), Heterogeneous nuclear ribonucleoproteins A2/B1
著者Liu, Y, Abula, A, Xiao, H, Guo, H, Li, T, Zheng, L, Chen, B, Nguyen, H, Ji, X.
登録日2022-12-07
公開日2023-11-29
実験手法X-RAY DIFFRACTION (2.644 Å)
主引用文献Structural Insight Into hnRNP A2/B1 Homodimerization and DNA Recognition.
J.Mol.Biol., 435, 2023
6L0O
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BU of 6l0o by Molmil
WH domain of human MCM8
分子名称: DNA helicase MCM8, SULFATE ION
著者Liu, Y, Li, J, Liu, L, Zeng, H.
登録日2019-09-26
公開日2020-04-29
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Crystal structure of the winged-helix domain of MCM8.
Biochem.Biophys.Res.Commun., 526, 2020
7WDL
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BU of 7wdl by Molmil
Fungal immunomodulatory protein FIP-nha
分子名称: Fungal immunomodulatory protein
著者Liu, Y, Bastiaan-Net, S, Zhang, Y, Hoppenbrouwers, T, Xie, Y, Wang, Y, Wei, X, Du, G, Zhang, H, Imam, K.M.S.U, Wichers, H.J, Li, Z.
登録日2021-12-22
公開日2022-06-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Linking the thermostability of FIP-nha (Nectria haematococca) to its structural properties.
Int.J.Biol.Macromol., 213, 2022
7VKH
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BU of 7vkh by Molmil
Crystal structure of AF9 YEATS domain in complex with hit 2
分子名称: GLYCEROL, Protein AF-9, ~{N}-(3-azanyl-4-chloranyl-phenyl)-2-methoxy-ethanamide
著者Liu, Y, Ruan, K.
登録日2021-09-30
公開日2022-10-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Fragment-Based Discovery of AF9 YEATS Domain Inhibitors.
Int J Mol Sci, 23, 2022
7VKG
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Crystal structure of AF9 YEATS domain in complex with Compound 10
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Protein AF-9, ...
著者Liu, Y, Ruan, K.
登録日2021-09-29
公開日2022-10-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Fragment-Based Discovery of AF9 YEATS Domain Inhibitors.
Int J Mol Sci, 23, 2022
5ZEV
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BU of 5zev by Molmil
Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*TP*GP*AP*GP*GP*TP*GP*CP*GP*GP*GP*GP*T)-3')
著者Liu, Y, Lan, W.X.
登録日2018-02-28
公開日2018-04-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A putative G-quadruplex structure in the proximal promoter ofVEGFR-2has implications for drug design to inhibit tumor angiogenesis.
J. Biol. Chem., 293, 2018
7TNC
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M13F/G116F Pseudomonas aeruginosa azurin
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, CHLORIDE ION, ...
著者Liu, Y, Lu, Y.
登録日2022-01-20
公開日2023-01-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural Basis for the Effects of Phenylalanine on Tuning the Reduction Potential of Type 1 Copper in Azurin.
Inorg.Chem., 62, 2023
7U2F
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G116F Pseudomonas aeruginosa azurin
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, COPPER (II) ION
著者Liu, Y, Lu, Y.
登録日2022-02-23
公開日2023-03-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis for the Effects of Phenylalanine on Tuning the Reduction Potential of Type 1 Copper in Azurin.
Inorg.Chem., 62, 2023
7VZ2
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BU of 7vz2 by Molmil
Crystal structure of chromodomain of Arabidopsis LHP1
分子名称: Chromo domain-containing protein LHP1, UNKNOWN ATOM OR ION
著者Liu, Y, Min, J.
登録日2021-11-15
公開日2022-02-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for the recognition of methylated histone H3 by the Arabidopsis LHP1 chromodomain.
J.Biol.Chem., 298, 2022
7VYW
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Crystal structure of the chromodomain of Arabidopsis LHP1 in complex with methylated histone H3K9 peptide
分子名称: Chromo domain-containing protein LHP1, SULFATE ION, methylated histone H3K9 peptide
著者Liu, Y, Zhang, M, Min, J.
登録日2021-11-15
公開日2022-02-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis for the recognition of methylated histone H3 by the Arabidopsis LHP1 chromodomain.
J.Biol.Chem., 298, 2022

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