6P0J
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![BU of 6p0j by Molmil](/molmil-images/mine/6p0j) | Crystal structure of GDP-bound human RalA | Descriptor: | CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, Ras-related protein Ral-A | Authors: | Bum-Erdene, K, Gonzalez-Gutierrez, G, Liu, D, Meroueh, S.O. | Deposit date: | 2019-05-17 | Release date: | 2020-03-04 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.31 Å) | Cite: | Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases. Proc.Natl.Acad.Sci.USA, 117, 2020
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6P0K
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![BU of 6p0k by Molmil](/molmil-images/mine/6p0k) | Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds. | Descriptor: | 4-[(6-chloropyridin-2-yl)sulfamoyl]benzene-1-sulfonic acid, CALCIUM ION, CHLORIDE ION, ... | Authors: | Bum-Erdene, K, Gonzalez-Gutierrez, G, Liu, D, Ghozayel, M.K, Xu, D, Meroueh, S.O. | Deposit date: | 2019-05-17 | Release date: | 2020-03-04 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.49 Å) | Cite: | Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases. Proc.Natl.Acad.Sci.USA, 117, 2020
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6P0O
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![BU of 6p0o by Molmil](/molmil-images/mine/6p0o) | Crystal structure of GDP-bound human RalA | Descriptor: | CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, Ras-related protein Ral-A | Authors: | Bum-Erdene, K, Gonzalez-Gutierrez, G, Liu, D, Ghozayel, M.K, Xu, D, Meroueh, S.O. | Deposit date: | 2019-05-17 | Release date: | 2020-03-04 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.54 Å) | Cite: | Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases. Proc.Natl.Acad.Sci.USA, 117, 2020
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6P0N
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![BU of 6p0n by Molmil](/molmil-images/mine/6p0n) | Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds. | Descriptor: | 4-[(6-fluoropyridin-2-yl)sulfamoyl]benzene-1-sulfonic acid, CALCIUM ION, CHLORIDE ION, ... | Authors: | Bum-Erdene, K, Gonzalez-Gutierrez, G, Liu, D, Ghozayel, M.K, Xu, D, Meroueh, S.O. | Deposit date: | 2019-05-17 | Release date: | 2020-03-04 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.63 Å) | Cite: | Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases. Proc.Natl.Acad.Sci.USA, 117, 2020
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6P0M
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![BU of 6p0m by Molmil](/molmil-images/mine/6p0m) | Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds. | Descriptor: | 4-[(3-chloropyridin-2-yl)sulfamoyl]benzene-1-sulfonic acid, CALCIUM ION, CHLORIDE ION, ... | Authors: | Bum-Erdene, K, Gonzalez-Gutierrez, G, Liu, D, Ghozayel, M.K, Xu, D, Meroueh, S.O. | Deposit date: | 2019-05-17 | Release date: | 2020-03-04 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases. Proc.Natl.Acad.Sci.USA, 117, 2020
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6P0I
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![BU of 6p0i by Molmil](/molmil-images/mine/6p0i) | Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds. | Descriptor: | 1,2-ETHANEDIOL, 4-[(5-methoxypyridin-3-yl)sulfamoyl]benzene-1-sulfonic acid, ACETATE ION, ... | Authors: | Bum-Erdene, K, Gonzalez-Gutierrez, G, Liu, D, Ghozayel, M.K, Xu, D, Meroueh, S.O. | Deposit date: | 2019-05-17 | Release date: | 2020-03-04 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.18 Å) | Cite: | Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases. Proc.Natl.Acad.Sci.USA, 117, 2020
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6P0L
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![BU of 6p0l by Molmil](/molmil-images/mine/6p0l) | Crystal structure of GDP-bound human RalA in a covalent complex with aryl sulfonyl fluoride compounds. | Descriptor: | 4-[(2-methoxypyridin-3-yl)sulfamoyl]benzene-1-sulfonic acid, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ... | Authors: | Bum-Erdene, K, Gonzalez-Gutierrez, G, Liu, D, Ghozayel, M.K, Xu, D, Meroueh, S.O. | Deposit date: | 2019-05-17 | Release date: | 2020-03-04 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Small-molecule covalent bond formation at tyrosine creates a binding site and inhibits activation of Ral GTPases. Proc.Natl.Acad.Sci.USA, 117, 2020
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1DK3
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![BU of 1dk3 by Molmil](/molmil-images/mine/1dk3) | REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA | Descriptor: | DNA POLYMERASE BETA | Authors: | Maciejewski, M.W, Prasad, R, Liu, D.-J, Wilson, S.H, Mullen, G.P. | Deposit date: | 1999-12-06 | Release date: | 2000-02-14 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Backbone dynamics and refined solution structure of the N-terminal domain of DNA polymerase beta. Correlation with DNA binding and dRP lyase activity. J.Mol.Biol., 296, 2000
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1DK2
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![BU of 1dk2 by Molmil](/molmil-images/mine/1dk2) | REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA | Descriptor: | DNA POLYMERASE BETA | Authors: | Maciejewski, M.W, Prasad, R, Liu, D.-J, Wilson, S.H, Mullen, G.P. | Deposit date: | 1999-12-06 | Release date: | 2000-02-14 | Last modified: | 2024-04-10 | Method: | SOLUTION NMR | Cite: | Backbone dynamics and refined solution structure of the N-terminal domain of DNA polymerase beta. Correlation with DNA binding and dRP lyase activity. J.Mol.Biol., 296, 2000
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3Q9U
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![BU of 3q9u by Molmil](/molmil-images/mine/3q9u) | In silico and in vitro co-evolution of a high affinity complementary protein-protein interface | Descriptor: | COENZYME A, CoA binding protein, consensus ankyrin repeat | Authors: | Karanicolas, J, Corn, J.E, Chen, I, Joachimiak, L.A, Dym, O, Chung, S, Albeck, S, Unger, T, Hu, W, Liu, G, Delbecq, S, Montelione, G.T, Spiegel, C, Liu, D, Baker, D, Israel Structural Proteomics Center (ISPC) | Deposit date: | 2011-01-10 | Release date: | 2011-04-20 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | A de novo protein binding pair by computational design and directed evolution. Mol.Cell, 42, 2011
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3Q9N
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![BU of 3q9n by Molmil](/molmil-images/mine/3q9n) | In silico and in vitro co-evolution of a high affinity complementary protein-protein interface | Descriptor: | CARBAMOYL SARCOSINE, COENZYME A, CoA binding protein, ... | Authors: | Karanicolas, J, Corn, J.E, Chen, I, Joachimiak, L.A, Dym, O, Chung, S, Albeck, S, Unger, T, Hu, W, Liu, G, Delbecq, S, Montelione, G.T, Spiegel, C, Liu, D, Baker, D, Israel Structural Proteomics Center (ISPC) | Deposit date: | 2011-01-09 | Release date: | 2011-04-27 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | A de novo protein binding pair by computational design and directed evolution. Mol.Cell, 42, 2011
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7R6N
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![BU of 7r6n by Molmil](/molmil-images/mine/7r6n) | Exon-free state of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic trimeric construct | Descriptor: | Group I intron, MAGNESIUM ION | Authors: | Thelot, F, Liu, D, Liao, M, Yin, P. | Deposit date: | 2021-06-22 | Release date: | 2022-05-04 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (4.1 Å) | Cite: | Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nat.Methods, 19, 2022
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7R6M
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![BU of 7r6m by Molmil](/molmil-images/mine/7r6m) | Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct | Descriptor: | Group I intron, Ligated exon mimic of the Group I intron, MAGNESIUM ION | Authors: | Thelot, F, Liu, D, Liao, M, Yin, P. | Deposit date: | 2021-06-22 | Release date: | 2022-05-04 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.68 Å) | Cite: | Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nat.Methods, 19, 2022
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7R6L
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![BU of 7r6l by Molmil](/molmil-images/mine/7r6l) | 5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct | Descriptor: | Group I intron, 3 prime fragment plus 3 prime exon, 5 prime fragment, ... | Authors: | Thelot, F, Liu, D, Liao, M, Yin, P. | Deposit date: | 2021-06-22 | Release date: | 2022-05-04 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (2.85 Å) | Cite: | Sub-3- angstrom cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nat.Methods, 19, 2022
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7KZ7
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![BU of 7kz7 by Molmil](/molmil-images/mine/7kz7) | Crystals Structure of the Mutated Protease Domain of Botulinum Neurotoxin X (X4130B1). | Descriptor: | 1,2-ETHANEDIOL, Botulinum neurotoxin type X, GLYCEROL, ... | Authors: | Blum, T.R, Liu, H, Packer, M.S, Xiong, X, Lee, P.G, Zhang, S, Richter, M, Minasov, G, Satchell, K.J.F, Dong, M, Liu, D.R, Center for Structural Genomics of Infectious Diseases (CSGID) | Deposit date: | 2020-12-10 | Release date: | 2020-12-23 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Phage-assisted evolution of botulinum neurotoxin proteases with reprogrammed specificity. Science, 371, 2021
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6V99
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![BU of 6v99 by Molmil](/molmil-images/mine/6v99) | Agrobacterium tumefaciens ADP-Glucose pyrophosphorylase- S72D in the presence of sulfate | Descriptor: | Glucose-1-phosphate adenylyltransferase, SULFATE ION | Authors: | Zheng, Y, Alghamdi, M.A, Ballicora, M.A, Liu, D. | Deposit date: | 2019-12-13 | Release date: | 2020-12-16 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (2.287 Å) | Cite: | Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory site of the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase. Protein Sci., 31, 2022
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1L8H
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![BU of 1l8h by Molmil](/molmil-images/mine/1l8h) | DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA PROTECTION DURING STARVATION PROTEIN, POTASSIUM ION | Authors: | Luo, J, Liu, D, White, M.A, Fox, R.O. | Deposit date: | 2002-03-20 | Release date: | 2003-06-24 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | DNA Protection and Binding by E. Coli Dps Protein To be Published
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1L8I
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![BU of 1l8i by Molmil](/molmil-images/mine/1l8i) | Dna Protection and Binding by E. Coli DPS Protein | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA PROTECTION DURING STARVATION PROTEIN, POTASSIUM ION | Authors: | Luo, J, Liu, D, White, M.A, Fox, R.O. | Deposit date: | 2002-03-20 | Release date: | 2003-06-24 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | DNA Protection and Binding by E. Coli Dps Protein To be Published
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1JRE
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![BU of 1jre by Molmil](/molmil-images/mine/1jre) | DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, DNA PROTECTION DURING STARVATION PROTEIN | Authors: | Luo, J, Liu, D, White, M.A, Fox, R.O. | Deposit date: | 2001-08-13 | Release date: | 2003-06-17 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | DNA Protection and Binding by E. Coli Dps Protein To be Published
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1JTS
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![BU of 1jts by Molmil](/molmil-images/mine/1jts) | |
1HY2
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![BU of 1hy2 by Molmil](/molmil-images/mine/1hy2) | MINIPROTEIN MP-1 COMPLEX WITH STREPTAVIDIN | Descriptor: | MP-1, STREPTAVIDIN | Authors: | Yang, H.W, Liu, D.Q, Fan, X, White, M.A, Fox, R.O. | Deposit date: | 2001-01-17 | Release date: | 2003-06-17 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Conformational Ensemble Analysis of Ligand Binding in Streptavidin Mini-Protein Complexes To be Published
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1HXL
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![BU of 1hxl by Molmil](/molmil-images/mine/1hxl) | MINIPROTEIN MP-2 (V10A) COMPLEX WITH STREPTAVIDIN | Descriptor: | MP-2, STREPTAVIDIN | Authors: | Yang, H.W, Liu, D.Q, Fan, X, White, M.A, Fox, R.O. | Deposit date: | 2001-01-16 | Release date: | 2003-06-17 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Conformational Ensemble Analysis of Ligand Binding in Streptavidin Mini-Protein Complexes To be Published
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1HXZ
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![BU of 1hxz by Molmil](/molmil-images/mine/1hxz) | MINIPROTEIN MP-2 COMPLEX WITH STREPTAVIDIN | Descriptor: | MP-2, STREPTAVIDIN | Authors: | Yang, H.W, Liu, D.Q, Fan, X, White, M.A, Fox, R.O. | Deposit date: | 2001-01-17 | Release date: | 2003-06-17 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Conformational Ensemble Analysis of Ligand Binding in Streptavidin Mini-Protein Complexes To be Published
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6UXZ
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![BU of 6uxz by Molmil](/molmil-images/mine/6uxz) | (S)-4-Amino-5-phenoxypentanoate as a Selective Agonist of the Transcription Factor GabR | Descriptor: | (4S)-4-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]-5-phenoxypentanoic acid, HTH-type transcriptional regulatory protein GabR, SULFATE ION | Authors: | Catlin, D.S, Liu, D. | Deposit date: | 2019-11-09 | Release date: | 2020-10-07 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | (S)-4-Amino-5-phenoxypentanoate designed as a potential selective agonist of the bacterial transcription factor GabR. Protein Sci., 29, 2020
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6V96
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![BU of 6v96 by Molmil](/molmil-images/mine/6v96) | Agrobacterium tumefaciens ADP-Glucose pyrophosphorylase-S72E | Descriptor: | CITRIC ACID, GLYCEROL, Glucose-1-phosphate adenylyltransferase | Authors: | Zheng, Y, Hussien, R, Alghamdi, M.A, Ballicora, M.A, Liu, D. | Deposit date: | 2019-12-13 | Release date: | 2020-12-16 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory site of the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase. Protein Sci., 31, 2022
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