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PDB: 42 results

6MW6
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Antimicrobial lasso peptide citrocin
Descriptor: Citrocin
Authors:Link, A.J, Cheung-Lee, W.L.
Deposit date:2018-10-29
Release date:2019-03-13
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Discovery and structure of the antimicrobial lasso peptide citrocin.
J.Biol.Chem., 294, 2019
5KTC
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BU of 5ktc by Molmil
FdhC with bound products: Coenzyme A and 3-[(R)-3-hydroxybutanoylamino]-3,6-dideoxy-d-galactose
Descriptor: 1,2-ETHANEDIOL, COENZYME A, FdhC, ...
Authors:Salinger, A.J, Thoden, J.B, Holden, H.M.
Deposit date:2016-07-11
Release date:2016-07-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Functional Investigation of FdhC from Acinetobacter nosocomialis: A Sugar N-Acyltransferase Belonging to the GNAT Superfamily.
Biochemistry, 55, 2016
5KTA
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Apo FdhC- a nucleotide-linked sugar GNAT
Descriptor: DIMETHYL SULFOXIDE, FdhC, SULFATE ION
Authors:Salinger, A.J, Thoden, J.B, Holden, H.M.
Deposit date:2016-07-11
Release date:2016-07-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and Functional Investigation of FdhC from Acinetobacter nosocomialis: A Sugar N-Acyltransferase Belonging to the GNAT Superfamily.
Biochemistry, 55, 2016
5KTD
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BU of 5ktd by Molmil
FdhC with bound products: Coenzyme A and dTDP-3-amino-3,6-dideoxy-d-glucose
Descriptor: 1,2-ETHANEDIOL, COENZYME A, FdhC, ...
Authors:Salinger, A.J, Thoden, J.B, Holden, H.M.
Deposit date:2016-07-11
Release date:2016-07-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Functional Investigation of FdhC from Acinetobacter nosocomialis: A Sugar N-Acyltransferase Belonging to the GNAT Superfamily.
Biochemistry, 55, 2016
6POR
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BU of 6por by Molmil
Antimicrobial lasso peptide ubonodin
Descriptor: Ubonodin
Authors:Link, A.J, Cheung-Lee, W.L.
Deposit date:2019-07-05
Release date:2019-12-04
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Discovery of Ubonodin, an Antimicrobial Lasso Peptide Active against Members of the Burkholderia cepacia Complex.
Chembiochem, 21, 2020
6Q1X
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BU of 6q1x by Molmil
Lasso peptide pandonodin
Descriptor: Pandonodin
Authors:Link, A.J, Cheung-Lee, W.L.
Deposit date:2019-08-06
Release date:2019-12-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Pandonodin: A Proteobacterial Lasso Peptide with an Exceptionally Long C-Terminal Tail.
Acs Chem.Biol., 14, 2019
8DYM
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BU of 8dym by Molmil
Aspartimidylated Graspetide Amycolimiditide
Descriptor: ATP-grasp target RiPP
Authors:Link, A.J, Choi, B.
Deposit date:2022-08-04
Release date:2022-11-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mechanistic Analysis of the Biosynthesis of the Aspartimidylated Graspetide Amycolimiditide.
J.Am.Chem.Soc., 144, 2022
6B5W
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BU of 6b5w by Molmil
Benenodin-1-dC5, state 2
Descriptor: Benenodin-1
Authors:Link, A.J, Zong, C.
Deposit date:2017-09-29
Release date:2017-10-18
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Lasso Peptide Benenodin-1 Is a Thermally Actuated [1]Rotaxane Switch
J. Am. Chem. Soc., 139 (30), 2017
8VYC
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BU of 8vyc by Molmil
Graspetide pre-fuscimiditide A1C/T3C variant
Descriptor: ATP-grasp target RiPP
Authors:Link, A.J, Choi, B.
Deposit date:2024-02-08
Release date:2024-05-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Cyclic Peptides from Graspetide Biosynthesis and Native Chemical Ligation.
J.Am.Chem.Soc., 146, 2024
2N68
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BU of 2n68 by Molmil
Solution study of Astexin1
Descriptor: astexin1
Authors:Link, A.J, Maksimov, M.O.
Deposit date:2015-08-13
Release date:2015-11-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Construction of Lasso Peptide Fusion Proteins.
Acs Chem.Biol., 11, 2016
5T56
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BU of 5t56 by Molmil
[3]catenane from MccJ25 G12R/I13C/G21C lasso peptide
Descriptor: Microcin J25
Authors:Link, A.J, Allen, C.D.
Deposit date:2016-08-30
Release date:2017-07-12
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:Self-Assembly of Catenanes from Lasso Peptides.
J. Am. Chem. Soc., 138, 2016
7LL7
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BU of 7ll7 by Molmil
[2]Catenane From MccJ25 Variant G12C G21C
Descriptor: GLY-GLY-ALA-GLY-HIS-VAL-PRO-GLU-TYR-PHE, VAL-CYS-ILE-GLY-THR-PRO-ILE-SER-PHE-TYR-CYS
Authors:Link, A.J, Schroeder, H.V.
Deposit date:2021-02-03
Release date:2021-08-04
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:Dynamic covalent self-assembly of mechanically interlocked molecules solely made from peptides.
Nat.Chem., 13, 2021
7LCW
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BU of 7lcw by Molmil
Aspartimidylated Lasso Peptide Lihuanodin
Descriptor: Lasso Peptide Lihuanodin
Authors:Link, A.J, Cao, L.
Deposit date:2021-01-11
Release date:2021-07-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Cellulonodin-2 and Lihuanodin: Lasso Peptides with an Aspartimide Post-Translational Modification.
J.Am.Chem.Soc., 143, 2021
7LI2
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BU of 7li2 by Molmil
Omega ester peptide pre-fuscimiditide
Descriptor: Pre-fuscimiditide peptide
Authors:Link, A.J, Elashal, H.E.
Deposit date:2021-01-26
Release date:2022-02-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Biosynthesis and characterization of fuscimiditide, an aspartimidylated graspetide.
Nat.Chem., 14, 2022
7LIF
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BU of 7lif by Molmil
Aspartimidylated omega ester peptide fuscimiditide
Descriptor: Fuscimiditide peptide
Authors:Link, A.J, Elashal, H.E.
Deposit date:2021-01-27
Release date:2022-02-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Biosynthesis and characterization of fuscimiditide, an aspartimidylated graspetide.
Nat.Chem., 14, 2022
7U4L
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BU of 7u4l by Molmil
Crystal structure of human GPX4-U46C in complex with MAC-5576
Descriptor: Phospholipid hydroperoxide glutathione peroxidase, thiophene-2-carbaldehyde
Authors:Forouhar, F, Liu, H, Lin, A.J, Wang, Q, Polychronidou, V, Soni, R.K, Xia, X, Stockwell, B.R.
Deposit date:2022-02-28
Release date:2022-12-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Small-molecule allosteric inhibitors of GPX4.
Cell Chem Biol, 29, 2022
7U4K
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BU of 7u4k by Molmil
Crystal structure of human GPX4-U46C-R152H in complex with ML162
Descriptor: 1,2-ETHANEDIOL, 2-chloro-N-(3-chloro-4-methoxyphenyl)-N-[(1R)-2-oxo-2-[(2-phenylethyl)amino]-1-(thiophen-2-yl)ethyl]acetamide, Phospholipid hydroperoxide glutathione peroxidase
Authors:Forouhar, F, Liu, H, Lin, A.J, Wang, Q, Xia, X, Soni, R.K, Stockwell, B.R.
Deposit date:2022-02-28
Release date:2022-12-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Small-molecule allosteric inhibitors of GPX4.
Cell Chem Biol, 29, 2022
7U4N
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BU of 7u4n by Molmil
Crystal structure of human GPX4-U46C in complex with RSL3
Descriptor: Phospholipid hydroperoxide glutathione peroxidase, methyl (1S,3R)-2-(chloroacetyl)-1-[4-(methoxycarbonyl)phenyl]-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carboxylate
Authors:Forouhar, F, Liu, H, Lin, A.J, Wang, Q, Xia, X, Soni, R.K, Stockwell, B.R.
Deposit date:2022-02-28
Release date:2022-12-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Small-molecule allosteric inhibitors of GPX4.
Cell Chem Biol, 29, 2022
7U4M
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BU of 7u4m by Molmil
Crystal structure of human GPX4-U46C in complex with LOC1886
Descriptor: 1,2-ETHANEDIOL, 4-methoxy-1H-indole-2-carbaldehyde, Phospholipid hydroperoxide glutathione peroxidase
Authors:Forouhar, F, Liu, H, Lin, A.J, Wang, Q, Polychronidou, V, Soni, R.K, Xia, X, Stockwell, B.R.
Deposit date:2022-02-28
Release date:2022-12-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Small-molecule allosteric inhibitors of GPX4.
Cell Chem Biol, 29, 2022
7U4J
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BU of 7u4j by Molmil
Crystal structure of human GPX4-U46C-R152H in complex with TMT10
Descriptor: Phospholipid hydroperoxide glutathione peroxidase, THIOCYANATE ION, ~{N}-(3-chloranyl-4-methoxy-phenyl)ethanamide
Authors:Forouhar, F, Liu, H, Lin, A.J, Wang, Q, Polychronidou, V, Soni, R.K, Xia, X, Stockwell, B.R.
Deposit date:2022-02-28
Release date:2022-12-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Small-molecule allosteric inhibitors of GPX4.
Cell Chem Biol, 29, 2022
7U4I
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BU of 7u4i by Molmil
Crystal structure of human GPX4-U46C-R152H in complex with CDS9
Descriptor: 2-bromo-N-[(thiophen-2-yl)methyl]acetamide, Phospholipid hydroperoxide glutathione peroxidase, THIOCYANATE ION
Authors:Forouhar, F, Liu, H, Lin, A.J, Wang, Q, Polychronidou, V, Soni, R.K, Xia, X, Stockwell, B.R.
Deposit date:2022-02-28
Release date:2022-12-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Small-molecule allosteric inhibitors of GPX4.
Cell Chem Biol, 29, 2022
8SVB
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BU of 8svb by Molmil
Antimicrobial lasso peptide achromonodin-1
Descriptor: Achromonodin-1
Authors:Carson, D.V, Cheung-Lee, W.L, So, L, Link, A.J.
Deposit date:2023-05-16
Release date:2023-10-11
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Discovery, Characterization, and Bioactivity of the Achromonodins: Lasso Peptides Encoded by Achromobacter .
J.Nat.Prod., 86, 2023
8Q1C
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BU of 8q1c by Molmil
Substrate-free D10N,P146A variant of beta-phosphoglucomutase from Lactococcus lactis
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-phosphoglucomutase, ...
Authors:Cruz-Navarrete, F.A, Baxter, N.J, Flinders, A.J, Buzoianu, A, Cliff, M.J, Baker, P.J, Waltho, J.P.
Deposit date:2023-07-31
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.679 Å)
Cite:Peri active site catalysis of proline isomerisation is the molecular basis of allomorphy in beta-phosphoglucomutase.
Commun Biol, 7, 2024
8Q1F
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BU of 8q1f by Molmil
D10N,P146A variant of beta-phosphoglucomutase from Lactococcus lactis in complex with native beta-glucose 1,6-bisphosphate intermediate
Descriptor: 1,2-ETHANEDIOL, 1,6-di-O-phosphono-beta-D-glucopyranose, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Cruz-Navarrete, F.A, Baxter, N.J, Flinders, A.J, Buzoianu, A, Cliff, M.J, Baker, P.J, Waltho, J.P.
Deposit date:2023-07-31
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Peri active site catalysis of proline isomerisation is the molecular basis of allomorphy in beta-phosphoglucomutase.
Commun Biol, 7, 2024
4ZU5
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BU of 4zu5 by Molmil
Crystal structure of the QdtA 3,4-Ketoisomerase from Thermoanaerobacterium thermosaccharolyticum, apo form
Descriptor: (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol, QdtA, THYMIDINE
Authors:Thoden, J.B, Vinogradov, E, Gilbert, M, Salinger, A.J, Holden, H.M.
Deposit date:2015-05-15
Release date:2016-03-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bacterial Sugar 3,4-Ketoisomerases: Structural Insight into Product Stereochemistry.
Biochemistry, 54, 2015

 

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