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PDB: 934 results

6QPQ
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The structure of the cohesin head module elucidates the mechanism of ring opening
Descriptor: Sister chromatid cohesion protein 1, Structural maintenance of chromosomes protein,Structural maintenance of chromosomes protein
Authors:Li, Y, Muir, K.W, Panne, D.
Deposit date:2019-02-14
Release date:2020-02-05
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of the cohesin ATPase elucidates the mechanism of SMC-kleisin ring opening.
Nat.Struct.Mol.Biol., 27, 2020
6QNX
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Structure of the SA2/SCC1/CTCF complex
Descriptor: Cohesin subunit SA-2, Double-strand-break repair protein rad21 homolog, Transcriptional repressor CTCF
Authors:Li, Y, Muir, K.W, Panne, D.
Deposit date:2019-02-12
Release date:2020-01-22
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structural basis for cohesin-CTCF-anchored loops.
Nature, 578, 2020
5VHG
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Crystal structure of pentad mutant GAPR-1
Descriptor: Golgi-associated plant pathogenesis-related protein 1, SULFATE ION
Authors:Li, Y, Zhao, Y, Su, M, Chakravarthy, S, Colbert, C.L, Levine, B, Sinha, S.C.
Deposit date:2017-04-13
Release date:2017-09-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Structural insights into the interaction of the conserved mammalian proteins GAPR-1 and Beclin 1, a key autophagy protein.
Acta Crystallogr D Struct Biol, 73, 2017
4O8W
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BU of 4o8w by Molmil
Crystal Structure of the GerD spore germination protein
Descriptor: Spore germination protein
Authors:Li, Y, Jin, K, Ghosh, S, Devarakonda, P, Carlson, K, Davis, A, Stewart, K, Cammett, E, Rossi, P.P, Setlow, B, Lu, M, Setlow, P, Hao, B.
Deposit date:2013-12-30
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.293 Å)
Cite:Structural and Functional Analysis of the GerD Spore Germination Protein of Bacillus Species.
J.Mol.Biol., 426, 2014
4YZE
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BU of 4yze by Molmil
Crystal structure of E.coli NemR reduced form
Descriptor: HTH-type transcriptional repressor NemR
Authors:Li, Y, Gray, M.J, Jakob, U, Xu, Z.
Deposit date:2015-03-24
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Does the Transcription Factor NemR Use a Regulatory Sulfenamide Bond to Sense Bleach?
Antioxid.Redox Signal., 23, 2015
5VZT
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Crystal structure of the Skp1-FBXO31 complex
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, F-box only protein 31, PHOSPHATE ION, ...
Authors:Li, Y, Jin, K, Hao, B.
Deposit date:2017-05-29
Release date:2018-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the phosphorylation-independent recognition of cyclin D1 by the SCFFBXO31 ubiquitin ligase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2KTQ
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OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), ...
Authors:Li, Y, Waksman, G.
Deposit date:1998-07-30
Release date:1999-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
2LS1
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BU of 2ls1 by Molmil
Structure of Sviceucin, an antibacterial type I lasso peptide from Streptomyces sviceus
Descriptor: Uncharacterized protein
Authors:Li, Y, Ducasse, R, Blond, A, Zirah, S, Goulard, C, Lescop, E, Guittet, E, Pernodet, J, Rebuffat, S.
Deposit date:2012-04-18
Release date:2012-08-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and biosynthesis of Sviceucin, an antibacterial type I lasso peptide from Streptomyces sviceus
To be Published
2L93
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Solution structure of the C-terminal domain of Salmonella H-NS
Descriptor: DNA-binding protein H-NS
Authors:Li, Y.
Deposit date:2011-01-29
Release date:2011-06-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins
Proc.Natl.Acad.Sci.USA, 108, 2011
2L92
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Solution structure of the C-terminal domain of H-NS like protein Bv3F
Descriptor: Histone family protein nucleoid-structuring protein H-NS
Authors:Li, Y, Xia, B.
Deposit date:2011-01-29
Release date:2011-06-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins
Proc.Natl.Acad.Sci.USA, 108, 2011
3L6F
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BU of 3l6f by Molmil
Structure of MHC class II molecule HLA-DR1 complexed with phosphopeptide MART-1
Descriptor: HLA class II histocompatibility antigen, DR alpha chain, DRB1-1 beta chain, ...
Authors:Li, Y, Mariuzza, R.A.
Deposit date:2009-12-23
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for the Presentation of Tumor-Associated MHC Class II-Restricted Phosphopeptides to CD4(+) T Cells.
J.Mol.Biol., 399, 2010
6L5Z
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BU of 6l5z by Molmil
Crystal strucutre of AF9 YEATS domain in complex with a cyclopeptide inhibitor
Descriptor: Protein AF-9, SC0-ALO-ALA-SC3-SC4-NH2
Authors:Li, Y, Chen, G, Li, H.
Deposit date:2019-10-25
Release date:2020-10-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Selective Targeting of AF9 YEATS Domain by Cyclopeptide Inhibitors with Preorganized Conformation.
J.Am.Chem.Soc., 142, 2020
4FA7
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Structure of Recombinant Cytochrome ba3 Oxidase mutant A204F from Thermus thermophilus
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
Authors:Li, Y, Chen, Y, Stout, C.D.
Deposit date:2012-05-21
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:

6KXS
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BU of 6kxs by Molmil
Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pIgR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin J chain, ...
Authors:Li, Y, Wang, G, Xiao, J.
Deposit date:2019-09-12
Release date:2020-02-05
Last modified:2021-12-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into immunoglobulin M.
Science, 367, 2020
8JYY
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BU of 8jyy by Molmil
Crystal structure of the gasdermin-like protein RCD-1-2 from Neurospora crassa
Descriptor: RCD-1-2
Authors:Li, Y, Hou, Y.J, Ding, J.
Deposit date:2023-07-04
Release date:2024-05-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.
Science, 384, 2024
8JYX
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BU of 8jyx by Molmil
Crystal structure of the gasdermin-like protein RCD-1-1 from Neurospora crassa
Descriptor: Maltodextrin-binding protein,Gasdermin-like protein rcd-1-1, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Li, Y, Hou, Y.J, Ding, J.
Deposit date:2023-07-04
Release date:2024-05-08
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.
Science, 384, 2024
5F6L
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BU of 5f6l by Molmil
The crystal structure of MLL1 (N3861I/Q3867L) in complex with RbBP5 and Ash2L
Descriptor: Histone-lysine N-methyltransferase 2A, Retinoblastoma-binding protein 5, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-06
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
5F5E
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BU of 5f5e by Molmil
The Crystal Structure of MLL1 SET domain with N3816I/Q3867L mutation
Descriptor: Histone-lysine N-methyltransferase 2A, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-04
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
5F6K
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BU of 5f6k by Molmil
Crystal structure of the MLL3-Ash2L-RbBP5 complex
Descriptor: Histone-lysine N-methyltransferase 2C, Retinoblastoma-binding protein 5, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-06
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.411 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
7BV6
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BU of 7bv6 by Molmil
Crystal structure of the autophagic STX17/SNAP29/VAMP8 SNARE complex
Descriptor: Synaptosomal-associated protein 29, Syntaxin-17, Vesicle-associated membrane protein 8
Authors:Li, Y, Pan, L.F.
Deposit date:2020-04-09
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Decoding three distinct states of the Syntaxin17 SNARE motif in mediating autophagosome-lysosome fusion.
Proc.Natl.Acad.Sci.USA, 117, 2020
7BV4
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Crystal structure of STX17 LIR region in complex with GABARAP
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Gamma-aminobutyric acid receptor-associated protein, ...
Authors:Li, Y, Pan, L.F.
Deposit date:2020-04-09
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Decoding three distinct states of the Syntaxin17 SNARE motif in mediating autophagosome-lysosome fusion.
Proc.Natl.Acad.Sci.USA, 117, 2020
5F59
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BU of 5f59 by Molmil
The crystal structure of MLL3 SET domain
Descriptor: Histone-lysine N-methyltransferase 2C, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION
Authors:Li, Y, Lei, M, Chen, Y.
Deposit date:2015-12-04
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structural basis for activity regulation of MLL family methyltransferases.
Nature, 530, 2016
5KTQ
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BU of 5ktq by Molmil
LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, PROTEIN (DNA POLYMERASE I)
Authors:Li, Y, Kong, Y, Korolev, S, Waksman, G.
Deposit date:1998-09-22
Release date:1998-09-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates.
Protein Sci., 7, 1998
5J9S
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BU of 5j9s by Molmil
ENL YEATS in complex with histone H3 acetylation at K27
Descriptor: H3K27ac peptide from Histone H3.1, Protein ENL, SULFATE ION
Authors:Li, Y, Li, H.
Deposit date:2016-04-11
Release date:2017-03-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia
Nature, 543, 2017
4N4G
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Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha
Descriptor: PHOSPHATE ION, ZINC ION, Zinc finger MYND domain-containing protein 11
Authors:Li, Y, Ren, Y, Li, H.
Deposit date:2013-10-08
Release date:2014-03-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.947 Å)
Cite:ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression
Nature, 508, 2014

224004

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