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PDB: 322 results

6U6B
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Structure of human DNA polymerase beta misinserting dAMPNPP opposite the 5'G of the cisplatin Pt-GG intrastrand crosslink with Manganese in the active site
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, Cisplatin, DNA (5'-D(*CP*CP*CP*AP*CP*GP*GP*CP*CP*CP*AP*TP*CP*AP*CP*C)-3'), ...
Authors:Ouzon-Shubeita, H, Vilas, C.K, Lee, S.
Deposit date:2019-08-29
Release date:2020-09-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.108 Å)
Cite:Structural insights into the promutagenic bypass of the major cisplatin-induced DNA lesion.
Biochem.J., 477, 2020
1F0D
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Cecropin A(1-8)-magainin 2(1-12) in dodecylphosphocholine micelles
Descriptor: CECROPIN A-MAGAININ 2 HYBRID PEPTIDE
Authors:Oh, D, Shin, S.Y, Lee, S, Kim, Y.
Deposit date:2000-05-16
Release date:2000-06-14
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Role of the hinge region and the tryptophan residue in the synthetic antimicrobial peptides, cecropin A(1-8)-magainin 2(1-12) and its analogues, on their antibiotic activities and structures.
Biochemistry, 39, 2000
1F0F
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Cecropin A(1-8)-magainin 2(1-12) gig deletion modification in dodecylphosphocholine micelles
Descriptor: CECROPIN A-MAGAININ 2 HYBRID PEPTIDE
Authors:Oh, D, Shin, S.Y, Lee, S, Kim, Y.
Deposit date:2000-05-16
Release date:2000-06-14
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Role of the hinge region and the tryptophan residue in the synthetic antimicrobial peptides, cecropin A(1-8)-magainin 2(1-12) and its analogues, on their antibiotic activities and structures.
Biochemistry, 39, 2000
1F0G
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Cecropin A(1-8)-magainin 2(1-12) L2 in dodecylphosphocholine micelles
Descriptor: CECROPIN A-MAGAININ 2 HYBRID PEPTIDE
Authors:Oh, D, Shin, S.Y, Lee, S, Kim, Y.
Deposit date:2000-05-16
Release date:2000-06-14
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Role of the hinge region and the tryptophan residue in the synthetic antimicrobial peptides, cecropin A(1-8)-magainin 2(1-12) and its analogues, on their antibiotic activities and structures.
Biochemistry, 39, 2000
8FLX
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De novo designed homotrimer; the fusion product of BGL17 and DHR59
Descriptor: LK031
Authors:Kibler, R.D, Kennedy, M.A, Stoddard, B.L, Lee, S.
Deposit date:2022-12-22
Release date:2023-06-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:De novo designed homotrimer; the fusion product of BGL17 and DHR59
To Be Published
1F0H
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Cecropin A(1-8)-magainin 2(1-12) A2 in dodecylphosphocholine micelles
Descriptor: CECROPIN A-MAGAININ 2 HYBRID PEPTIDE
Authors:Oh, D, Shin, S.Y, Lee, S, Kim, Y.
Deposit date:2000-05-16
Release date:2000-06-14
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Role of the hinge region and the tryptophan residue in the synthetic antimicrobial peptides, cecropin A(1-8)-magainin 2(1-12) and its analogues, on their antibiotic activities and structures.
Biochemistry, 39, 2000
6UI2
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BU of 6ui2 by Molmil
Structure of human DNA polymerase eta complexed with N7MG in the template base paired with incoming non-hydrolyzable CTP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(FMG)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Koag, M.C, Lee, S.
Deposit date:2019-09-30
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Bypass of the Major Alkylative DNA Lesion by Human DNA Polymerase eta.
Molecules, 24, 2019
1F0E
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Cecropin A(1-8)-magainin 2(1-12) modified gig to P in dodecylphosphocholine micelles
Descriptor: CECROPIN A-MAGAININ 2 HYBRID PEPTIDE
Authors:Oh, D, Shin, S.Y, Lee, S, Kim, Y.
Deposit date:2000-05-16
Release date:2000-06-14
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Role of the hinge region and the tryptophan residue in the synthetic antimicrobial peptides, cecropin A(1-8)-magainin 2(1-12) and its analogues, on their antibiotic activities and structures.
Biochemistry, 39, 2000
6UQI
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BU of 6uqi by Molmil
Crystal structure of Q38A human DNA polymerase eta bound with 8-oxoadenine (oxoA) and non-hydrolyzable dGTP analog (dGTP*)
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(A38)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2019-10-19
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Q38A human DNA polymerase eta bound with 8-oxoadenine (oxoA) and non-hydrolyzable dGTP analog (dGTP*)
To Be Published
6UOS
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BU of 6uos by Molmil
MicroED structure of OsPYL/RCAR5 (24-29) at 6 e-/A^2
Descriptor: Abscisic acid receptor PYL5
Authors:Gallagher-Jones, M, Richards, L.S, Lee, S, Rodriguez, J.A.
Deposit date:2019-10-15
Release date:2020-05-13
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (0.9 Å)
Cite:Atomic structures determined from digitally defined nanocrystalline regions
Iucrj, 7, 2020
6UOW
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BU of 6uow by Molmil
MicroED structure of OsPYL/RCAR5 (24-29) at 12 e-/A^2
Descriptor: Abscisic acid receptor PYL5
Authors:Gallagher-Jones, M, Richards, L.S, Lee, S, Rodriguez, J.A.
Deposit date:2019-10-15
Release date:2020-05-13
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (1.2 Å)
Cite:Atomic structures determined from digitally defined nanocrystalline regions
Iucrj, 7, 2020
6UOP
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BU of 6uop by Molmil
OsPYL/RCAR5 (24 - 29) solved by nanobeam diffraction tomography
Descriptor: Abscisic acid receptor PYL5
Authors:Gallagher-Jones, M, Richards, L.S, Lee, S, Rodriguez, J.A.
Deposit date:2019-10-15
Release date:2020-05-13
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (1.351 Å)
Cite:Atomic structures determined from digitally defined nanocrystalline regions
Iucrj, 7, 2020
6UOR
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BU of 6uor by Molmil
MicroED structure of OsPYL/RCAR5 (24-29) at 3 e-/A^2
Descriptor: Abscisic acid receptor PYL5
Authors:Gallagher-Jones, M, Richards, L.S, Lee, S, Rodriguez, J.A.
Deposit date:2019-10-15
Release date:2020-05-13
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (0.9 Å)
Cite:Atomic structures determined from digitally defined nanocrystalline regions
Iucrj, 7, 2020
6UOU
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MicroED structure of OsPYL/RCAR5 (24-29) at 9 e-/A^2
Descriptor: Abscisic acid receptor PYL5
Authors:Gallagher-Jones, M, Richards, L.S, Lee, S, Rodriguez, J.A.
Deposit date:2019-10-15
Release date:2020-05-13
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (1.04 Å)
Cite:Atomic structures determined from digitally defined nanocrystalline regions
Iucrj, 7, 2020
6UOQ
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BU of 6uoq by Molmil
OsPYL/RCAR5 residues 24-29 solved from electron diffraction stills
Descriptor: Abscisic acid receptor PYL5
Authors:Gallagher-Jones, M, Richards, L.S, Lee, S, Rodriguez, J.A.
Deposit date:2019-10-15
Release date:2020-05-13
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (1.007 Å)
Cite:Atomic structures determined from digitally defined nanocrystalline regions
Iucrj, 7, 2020
6V5K
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BU of 6v5k by Molmil
Crystal structure of human DNA polymerase eta complexed with N7-nitrogen half-mustard guanine (NHMG) and dCTP*
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*T*(QRV)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2019-12-04
Release date:2020-12-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Crystal structure of human DNA polymerase eta complexed with N7-nitrogen half-mustard guanine (NHMG) and dCTP*
To Be Published
6VG6
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BU of 6vg6 by Molmil
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dGTP*
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2020-01-07
Release date:2021-01-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Promutagenic bypass of 7,8-dihydro-8-oxoadenine by translesion synthesis DNA polymerase Dpo4.
Biochem.J., 477, 2020
6VGM
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BU of 6vgm by Molmil
Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dTTP*
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2020-01-08
Release date:2021-01-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Promutagenic bypass of 7,8-dihydro-8-oxoadenine by translesion synthesis DNA polymerase Dpo4.
Biochem.J., 477, 2020
6VKP
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BU of 6vkp by Molmil
Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dG
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*AP*GP*AP*TP*TP*CP*G)-3'), DNA (5'-D(*TP*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*CP*C)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2020-01-21
Release date:2021-01-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Insights into the mismatch discrimination mechanism of Y-family DNA polymerase Dpo4.
Biochem.J., 478, 2021
3KL9
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BU of 3kl9 by Molmil
Crystal structure of PepA from Streptococcus pneumoniae
Descriptor: Glutamyl aminopeptidase, ZINC ION
Authors:Kim, K.K, Lee, S, Kim, D.
Deposit date:2009-11-07
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the substrate specificity of PepA from Streptococcus pneumoniae, a dodecameric tetrahedral protease
Biochem.Biophys.Res.Commun., 391, 2010
6VNP
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Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*TP*TP*CP*AP*T*(R5M)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*T)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2020-01-29
Release date:2021-02-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dT
To Be Published
6W5X
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Crystal structure of human polymerase eta complexed with N7-benzylguanine and dCTP*
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*TP*(DRG)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2020-03-14
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structure of human polymerase eta complexed with N7-benzylguanine and dCTP*
To Be Published
6WK6
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BU of 6wk6 by Molmil
Crystal structure of human polymerase eta complexed with Xanthine containing DNA
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*TP*(3ZO)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), ...
Authors:Jung, H, Lee, S.
Deposit date:2020-04-15
Release date:2021-01-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural insights into the bypass of the major deaminated purines by translesion synthesis DNA polymerase.
Biochem.J., 477, 2020
6PL8
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BU of 6pl8 by Molmil
Structure of human DNA polymerase eta complexed with 8OA in the template base paired with incoming non-hydrolyzable TTP
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(A38)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Koag, M.C, Lee, S.
Deposit date:2019-06-30
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Structure of human DNA polymerase eta complexed with 8OA in the template base paired with incoming non-hydrolyzable TTP
To Be Published
6PLC
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BU of 6plc by Molmil
Structure of human DNA polymerase eta complexed with 8OA in the template base paired with incoming non-hydrolyzable GTP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(A38)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
Authors:Koag, M.C, Lee, S.
Deposit date:2019-06-30
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutagenesis mechanism of the major oxidative adenine lesion 7,8-dihydro-8-oxoadenine.
Nucleic Acids Res., 48, 2020

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