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PDB: 308 results

6LRG
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BU of 6lrg by Molmil
Crystal Structure of the Ternary Complex of AgrE with Ornithine and NAD+
Descriptor: Alr4995 protein, L-ornithine, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Lee, H, Rhee, S.
Deposit date:2020-01-16
Release date:2020-04-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.41218114 Å)
Cite:Structural and mutational analyses of the bifunctional arginine dihydrolase and ornithine cyclodeaminase AgrE from the cyanobacteriumAnabaena.
J.Biol.Chem., 295, 2020
6UH7
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BU of 6uh7 by Molmil
EV-A71 strain 11316 complexed with MADAL compound 30
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Scaffold Simplification Strategy Leads to a Novel Generation of Dual Human Immunodeficiency Virus and Enterovirus-A71 Entry Inhibitors.
J.Med.Chem., 63, 2020
6UH6
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BU of 6uh6 by Molmil
EV-A71 strain 11316 complexed with MADAL compound 22
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Scaffold Simplification Strategy Leads to a Novel Generation of Dual Human Immunodeficiency Virus and Enterovirus-A71 Entry Inhibitors.
J.Med.Chem., 63, 2020
6UH1
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BU of 6uh1 by Molmil
Structure of the EVA71 strain 11316 capsid
Descriptor: SPHINGOSINE, VP1, VP2, ...
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-09-26
Release date:2019-12-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Scaffold Simplification Strategy Leads to a Novel Generation of Dual Human Immunodeficiency Virus and Enterovirus-A71 Entry Inhibitors.
J.Med.Chem., 63, 2020
8Y8Y
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BU of 8y8y by Molmil
Crystal structure of the PTPN21 FERM domain
Descriptor: CHLORIDE ION, Tyrosine-protein phosphatase non-receptor type 21
Authors:Lee, H.S, Ku, B.
Deposit date:2024-02-06
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Structural analysis of the FERM domain of human protein tyrosine phosphatase non-receptor type 21.
Acta Crystallogr.,Sect.F, 80, 2024
3J3Z
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BU of 3j3z by Molmil
Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment
Descriptor: MA28-7 neutralizing antibody heavy chain, MA28-7 neutralizing antibody light chain
Authors:Lee, H, Cifuente, J.O, Ashley, R.E, Conway, J.F, Makhov, A.M, Tano, Y, Shimizu, H, Nishimura, Y, Hafenstein, S.
Deposit date:2013-05-21
Release date:2013-08-28
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (23.4 Å)
Cite:A strain-specific epitope of enterovirus 71 identified by cryo-electron microscopy of the complex with fab from neutralizing antibody.
J.Virol., 87, 2013
5XQH
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BU of 5xqh by Molmil
Crystal structure of truncated human Rogdi
Descriptor: Protein rogdi homolog
Authors:Lee, H, Lee, C.
Deposit date:2017-06-07
Release date:2017-07-12
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The crystal structure of human Rogdi provides insight into the causes of Kohlschutter-Tonz Syndrome
Sci Rep, 7, 2017
6OAS
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BU of 6oas by Molmil
Structure of canine parvovirus in complex with transferrin receptor type-1
Descriptor: Capsid protein VP1
Authors:Lee, H, Hafenstein, S.
Deposit date:2019-03-18
Release date:2019-09-18
Last modified:2019-12-04
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Transferrin receptor binds virus capsid with dynamic motion.
Proc.Natl.Acad.Sci.USA, 116, 2019
8JWJ
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BU of 8jwj by Molmil
PHD Finger Protein 7 (PHF7) in complex with UBE2D2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, PHD finger protein 7, ...
Authors:Lee, H.S, Bang, I, Choi, H.-J.
Deposit date:2023-06-29
Release date:2023-12-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Molecular basis for PHF7-mediated ubiquitination of histone H3.
Genes Dev., 37, 2023
8JWU
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BU of 8jwu by Molmil
PHD Finger Protein 7 (PHF7) fused to UBE2D2 via a (GSGG)3 linker
Descriptor: PHD finger protein 7,Ubiquitin-conjugating enzyme E2 D2, ZINC ION
Authors:Lee, H.S, Bang, I, Choi, H.-J.
Deposit date:2023-06-29
Release date:2023-12-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.58 Å)
Cite:Molecular basis for PHF7-mediated ubiquitination of histone H3.
Genes Dev., 37, 2023
7XW3
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BU of 7xw3 by Molmil
Cryo-EM structure of an apo-form of human DICER
Descriptor: Endoribonuclease Dicer
Authors:Lee, H, Roh, S.-H.
Deposit date:2022-05-26
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (4.04 Å)
Cite:Structure of the human DICER-pre-miRNA complex in a dicing state.
Nature, 615, 2023
7XW2
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BU of 7xw2 by Molmil
Cryo-EM structure of human DICER-pre-miRNA in a dicing state
Descriptor: CALCIUM ION, Endoribonuclease Dicer, RNA (73-MER)
Authors:Lee, H, Roh, S.-H.
Deposit date:2022-05-26
Release date:2023-03-08
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Structure of the human DICER-pre-miRNA complex in a dicing state.
Nature, 615, 2023
5XQI
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BU of 5xqi by Molmil
Crystal structure of full-length human Rogdi
Descriptor: Protein rogdi homolog
Authors:Lee, H, Lee, C.
Deposit date:2017-06-07
Release date:2017-07-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of human Rogdi provides insight into the causes of Kohlschutter-Tonz Syndrome
Sci Rep, 7, 2017
7VZE
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BU of 7vze by Molmil
Crystal structure of PTPN4 PDZ bound to the PBM of HPV16 E6
Descriptor: Tyrosine-protein phosphatase non-receptor type 4, the PDZ-binding motif of HPV16 E6
Authors:Lee, H.S, Yun, H.-Y, Ku, B.
Deposit date:2021-11-16
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.882 Å)
Cite:Structural and biochemical analysis of the PTPN4 PDZ domain bound to the C-terminal tail of the human papillomavirus E6 oncoprotein.
J.Microbiol, 60, 2022
5Y2Y
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BU of 5y2y by Molmil
Crystal structure of HaloTag (M175C) complexed with dansyl-PEG2-HaloTag ligand
Descriptor: 5-(dimethylamino)-~{N}-[2-(2-hexoxyethoxy)ethyl]naphthalene-1-sulfonamide, CHLORIDE ION, Haloalkane dehalogenase
Authors:Lee, H, Kang, M, Rhee, H, Lee, C.
Deposit date:2017-07-27
Release date:2017-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure-guided synthesis of a protein-based fluorescent sensor for alkyl halides
Chem. Commun. (Camb.), 53, 2017
5Y2X
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BU of 5y2x by Molmil
Crystal structure of apo-HaloTag (M175C)
Descriptor: CHLORIDE ION, Haloalkane dehalogenase
Authors:Lee, H, Kang, M, Rhee, H, Lee, C.
Deposit date:2017-07-27
Release date:2017-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structure-guided synthesis of a protein-based fluorescent sensor for alkyl halides
Chem. Commun. (Camb.), 53, 2017
6LRH
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BU of 6lrh by Molmil
Crystal Structure of the Binary Complex of AgrE C264A mutant with L-arginine
Descriptor: ARGININE, Alr4995 protein
Authors:Lee, H, Rhee, S.
Deposit date:2020-01-16
Release date:2020-04-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.70510483 Å)
Cite:Structural and mutational analyses of the bifunctional arginine dihydrolase and ornithine cyclodeaminase AgrE from the cyanobacteriumAnabaena.
J.Biol.Chem., 295, 2020
6LRF
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BU of 6lrf by Molmil
Crystal structure of unliganded AgrE
Descriptor: Alr4995 protein
Authors:Lee, H, Rhee, S.
Deposit date:2020-01-16
Release date:2020-04-01
Last modified:2020-05-13
Method:X-RAY DIFFRACTION (2.05466056 Å)
Cite:Structural and mutational analyses of the bifunctional arginine dihydrolase and ornithine cyclodeaminase AgrE from the cyanobacteriumAnabaena.
J.Biol.Chem., 295, 2020
3JD7
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BU of 3jd7 by Molmil
The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Lee, H, Shingler, K.L, Organtini, L.J, Ashley, R.E, Makhov, A.M, Conway, J.F, Hafenstein, S.
Deposit date:2016-04-29
Release date:2016-09-14
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs.
Sci Adv, 2, 2016
3J7E
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BU of 3j7e by Molmil
Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Descriptor: H16.V5 Fab heavy chain, H16.V5 Fab light chain
Authors:Lee, H, Brendle, S.A, Bywaters, S.M, Christensen, N.D, Hafenstein, S.
Deposit date:2014-06-23
Release date:2014-11-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:A cryo-electron microscopy study identifies the complete H16.V5 epitope and reveals global conformational changes initiated by binding of the neutralizing antibody fragment.
J.Virol., 89, 2015
3J7G
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BU of 3j7g by Molmil
Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Descriptor: L1
Authors:Lee, H, Hafenstein, S.
Deposit date:2014-06-24
Release date:2014-11-26
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:A cryo-electron microscopy study identifies the complete H16.V5 epitope and reveals global conformational changes initiated by binding of the neutralizing antibody fragment.
J.Virol., 89, 2015
7BTG
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BU of 7btg by Molmil
Crystal structure of DARP, drosophila arginine phosphatase
Descriptor: CHLORIDE ION, GEO10716p1, PHOSPHATE ION
Authors:Lee, H.S, Mo, Y, Ku, B, Kim, S.J.
Deposit date:2020-04-01
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.188 Å)
Cite:Structural and Biochemical Characterization of the Two Drosophila Low Molecular Weight-Protein Tyrosine Phosphatases DARP and Primo-1.
Mol.Cells, 43, 2020
1JOL
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BU of 1jol by Molmil
THE CRYSTAL STRUCTURE OF THE BINARY COMPLEX BETWEEN FOLINIC ACID (LEUCOVORIN) AND E. COLI DIHYDROFOLATE REDUCTASE
Descriptor: CALCIUM ION, CHLORIDE ION, DIHYDROFOLATE REDUCTASE, ...
Authors:Lee, H, Reyes, V.M, Kraut, J.
Deposit date:1996-02-25
Release date:1996-11-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structures of Escherichia coli dihydrofolate reductase complexed with 5-formyltetrahydrofolate (folinic acid) in two space groups: evidence for enolization of pteridine O4.
Biochemistry, 35, 1996
5JWT
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BU of 5jwt by Molmil
T4 Lysozyme L99A/M102Q with Benzene Bound
Descriptor: BENZENE, Endolysin
Authors:Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
Deposit date:2016-05-12
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016
5JWU
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BU of 5jwu by Molmil
T4 Lysozyme L99A/M102Q with 1,2-Dihydro-1,2-azaborine Bound
Descriptor: 1,2-dihydro-1,2-azaborinine, CHLORIDE ION, Endolysin
Authors:Lee, H, Fischer, M, Shoichet, B.K, Liu, S.-Y.
Deposit date:2016-05-12
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hydrogen Bonding of 1,2-Azaborines in the Binding Cavity of T4 Lysozyme Mutants: Structures and Thermodynamics.
J.Am.Chem.Soc., 138, 2016

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