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PDB: 985 件

5ZEV
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Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*TP*GP*AP*GP*GP*TP*GP*CP*GP*GP*GP*GP*T)-3')
著者Liu, Y, Lan, W.X.
登録日2018-02-28
公開日2018-04-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A putative G-quadruplex structure in the proximal promoter ofVEGFR-2has implications for drug design to inhibit tumor angiogenesis.
J. Biol. Chem., 293, 2018
6JHP
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BU of 6jhp by Molmil
Crystal structure of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-galactosidase
著者Liu, Y, Huang, P, Ma, J, Jiang, Z.
登録日2019-02-18
公開日2020-05-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.559 Å)
主引用文献Crystal structure and phylogenetic analysis of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila
To be published
6K0C
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BU of 6k0c by Molmil
Crystal structure of ceNAP1-H2A.Z-H2B complex
分子名称: Histone H2B 2,Histone H2A.V, Nucleosome Assembly Protein
著者Liu, Y.R.
登録日2019-05-05
公開日2019-10-09
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.281 Å)
主引用文献Crystal structure of xlH2A-H2B
Structure, 2019
6K00
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Crystal structure A of ceNAP1-H2A-H2B complex
分子名称: Histone H2B 1,Histone H2A, Nucleosome Assembly Protein
著者Liu, Y.R.
登録日2019-05-05
公開日2019-10-09
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.198 Å)
主引用文献Crystal structure of xlH2A-H2B
Structure, 2019
6K03
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BU of 6k03 by Molmil
Crystal structure of ceH2A-H2B
分子名称: Histone H2B 1,Histone H2A
著者Liu, Y.R.
登録日2019-05-05
公開日2019-10-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.857 Å)
主引用文献Crystal structure of xlH2A-H2B
Structure, 2019
6K01
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Crystal structure of xH2A-H2B
分子名称: Histone H2A, Histone H2B 1.1
著者Liu, Y.R.
登録日2019-05-05
公開日2019-10-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.839 Å)
主引用文献Crystal structure of xlH2A-H2B
Structure, 2019
6K09
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Crystal structure B of ceNAP1-H2A-H2B complex
分子名称: Histone H2B 1,Histone H2A, Nucleosome Assembly Protein
著者Liu, Y.R.
登録日2019-05-05
公開日2019-10-09
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.248 Å)
主引用文献Crystal structure of xlH2A-H2B
Structure, 2019
6L8U
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BU of 6l8u by Molmil
Crystal structure of human BCDIN3D in complex with SAH
分子名称: RNA 5'-monophosphate methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Liu, Y, Martinez, A, Yamashita, S, Tomita, K.
登録日2019-11-07
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.925 Å)
主引用文献Crystal structure of human cytoplasmic tRNAHis-specific 5'-monomethylphosphate capping enzyme.
Nucleic Acids Res., 48, 2020
7XA4
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Thermotoga maritima ferritin variant-Tm-E (S111H) with Zn
分子名称: Ferritin, ZINC ION
著者Liu, Y, Zhao, G.
登録日2022-03-17
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7XA2
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Thermotoga maritima ferritin variant-Tm-E(S111H)
分子名称: FE (III) ION, Ferritin
著者Liu, Y, Zhao, G.
登録日2022-03-16
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7FA3
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BU of 7fa3 by Molmil
Selenomethionine-derived structure of Aca1 in Pseudomonas phage JBD30
分子名称: Aca1
著者Liu, Y, Zhang, L, Wu, B, Huang, H.
登録日2021-07-05
公開日2021-07-21
最終更新日2022-02-02
実験手法X-RAY DIFFRACTION (1.847 Å)
主引用文献Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2.
J.Biol.Chem., 297, 2021
7X9X
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Thermotoga Maritima ferritin variant-Tm-E(G40E) with Zn
分子名称: FE (III) ION, Ferritin, ZINC ION
著者Liu, Y, Zhao, G.
登録日2022-03-16
公開日2023-02-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7W5M
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BU of 7w5m by Molmil
Crystal structure of AtNASP in complex of H3 alpha3 helix peptide
分子名称: GLYCEROL, H3 alpha3 helix peptide, SULFATE ION, ...
著者Liu, Y, Bao, H.
登録日2021-11-30
公開日2022-05-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural basis for histone H3 recognition by NASP in Arabidopsis.
J Integr Plant Biol, 64, 2022
8K58
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BU of 8k58 by Molmil
The cryo-EM map of close TIEA-TIC complex
分子名称: 15 kDa RNA polymerase-binding protein, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Zhang, K.N, Liu, Y, Chen, M, Wang, Y, Lin, W, Li, M, Zhang, X, Gao, Y, Gong, Q, Chen, H, Steve, M, Li, S, Zhang, K, Liu, B.
登録日2023-07-21
公開日2024-07-24
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献TIEA inhibits Sigma70-dependent transcriptions, accelerates elongation speed and elevates transcription error
To Be Published
8K5A
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BU of 8k5a by Molmil
The cryo-EM map of open TIEA-TIC complex
分子名称: 15 kDa RNA polymerase-binding protein, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Zhang, K.N, Liu, Y, Chen, M, Wang, Y, Lin, W, Li, M, Zhang, X, Gao, Y, Gong, Q, Chen, H, Steve, M, Li, S, Zhang, K, Liu, B.
登録日2023-07-21
公開日2024-07-24
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献TIEA inhibits sigma70-dependent transcriptions, accelerates elongation speed and elevates transcription error
To Be Published
2VQ4
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BU of 2vq4 by Molmil
Carbohydrate-binding of the starch binding domain of Rhizopus oryzae glucoamylase in complex with beta-cyclodextrin and maltoheptaose
分子名称: GLUCOAMYLASE A
著者Tung, J.-Y, Liu, Y.-Y, Sun, Y.-J.
登録日2008-03-11
公開日2009-07-07
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal Structures of the Starch-Binding Domain from Rhizopus Oryzae Glucoamylase Reveal a Polysaccharide-Binding Path.
Biochem.J., 416, 2008
6VZU
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BU of 6vzu by Molmil
TTLL6 bound to alpha-elongation analog
分子名称: (2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid, (2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, ADENOSINE-5'-DIPHOSPHATE, ...
著者Mahalingan, K.K, Keenen, E.K, Strickland, M, Li, Y, Liu, Y, Ball, H.B, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2020-02-28
公開日2020-08-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
6VZQ
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BU of 6vzq by Molmil
Engineered TTLL6 mutant bound to alpha-elongation analog
分子名称: (2~{S})-2-[[[(1~{R})-1-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, (2~{S})-2-[[[(1~{S})-1-acetamidoethyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, ADENOSINE-5'-DIPHOSPHATE, ...
著者Mahalingan, K.K, Keenen, E.K, Strickland, E.K, Li, Y, Liu, Y, Ball, H.L, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2020-02-28
公開日2020-08-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
6VZT
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BU of 6vzt by Molmil
TTLL6 bound to ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
著者Mahalingan, K.K, Keenen, E.K, Strickland, M, Li, Y, Liu, Y, Ball, H.L, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2020-02-28
公開日2020-08-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
6VZV
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BU of 6vzv by Molmil
TTLL6 bound to gamma-elongation analog
分子名称: (2~{S})-2-[[[(3~{R})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, (2~{S})-2-[[[(3~{S})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid, ADENOSINE-5'-DIPHOSPHATE, ...
著者Mahalingan, K.K, Keenen, E.K, Strickland, M, Li, Y, Liu, Y, Ball, H.L, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2020-02-28
公開日2020-08-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
6VZR
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BU of 6vzr by Molmil
Engineered TTLL6 bound to the initiation analog
分子名称: (2~{S})-2-[[[(3~{R})-3-acetamido-4-(ethylamino)-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
著者Mahalingan, K.K, Keenen, E.K, Strickland, M, Li, Y, Liu, Y, Ball, H.L, Tanner, M.E, Tjandra, N, Roll-Mecak, A.
登録日2020-02-28
公開日2020-08-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
4IH1
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BU of 4ih1 by Molmil
Crystal structure of Karrikin Insensitive 2 (KAI2) from Arabidopsis thaliana
分子名称: Hydrolase, alpha/beta fold family protein
著者Zhou, X.E, Zhao, L.-H, Wu, Z.-S, Yi, W, Li, S, Li, Y, Xu, Y, Xu, T.-H, Liu, Y, Chen, R.-Z, Kovach, A, Kang, Y, Hou, L, He, Y, Zhang, C, Melcher, K, Xu, H.E.
登録日2012-12-18
公開日2013-01-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structures of two phytohormone signal-transducing alpha / beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.
Cell Res., 23, 2013
4IH9
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Crystal structure of rice DWARF14 (D14)
分子名称: Dwarf 88 esterase
著者Zhou, X.E, Zhao, L.-H, Wu, Z.-S, Yi, W, Li, S, Li, Y, Xu, Y, Xu, T.-H, Liu, Y, Chen, R.-Z, Kovach, A, Kang, Y, Hou, L, He, Y, Zhang, C, Melcher, K, Xu, H.E.
登録日2012-12-18
公開日2013-01-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structures of two phytohormone signal-transducing alpha / beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.
Cell Res., 23, 2013
4R5Y
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BU of 4r5y by Molmil
The complex structure of Braf V600E kinase domain with a novel Braf inhibitor
分子名称: 5-({(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl}oxy)-3,4-dihydro-1,8-naphthyridin-2(1H)-one, Serine/threonine-protein kinase B-raf
著者Feng, Y, Peng, H, Zhang, Y, Liu, Y, Wei, M.
登録日2014-08-22
公開日2016-02-24
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献BGB-283, a Novel RAF Kinase and EGFR Inhibitor, Displays Potent Antitumor Activity in BRAF-Mutated Colorectal Cancers.
Mol.Cancer Ther., 14, 2015
4IHA
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BU of 4iha by Molmil
Crystal structure of rice DWARF14 (D14) in complex with a GR24 hydrolysis intermediate
分子名称: (2R,3R)-2,4,4-trihydroxy-3-methylbutanal, Dwarf 88 esterase
著者Zhou, X.E, Zhao, L.-H, Wu, Z.-S, Yi, W, Li, S, Li, Y, Xu, Y, Xu, T.-H, Liu, Y, Chen, R.-Z, Kovach, A, Kang, Y, Hou, L, He, Y, Zhang, C, Melcher, K, Xu, H.E.
登録日2012-12-18
公開日2013-01-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structures of two phytohormone signal-transducing alpha / beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.
Cell Res., 23, 2013

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件を2024-07-24に公開中

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