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PDB: 274 results

6T6C
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Complex with chitin oligomer of C-type lysozyme from the upper gastrointestinal tract of Opisthocomus hoatzin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Lysozyme C
Authors:Taylor, E.J, Skjot, M, Skov, L.K, Klausen, M, De Maria, L, Gippert, G.P, Turkenburg, J.P, Davies, G.J, Wilson, K.S.
Deposit date:2019-10-18
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The C-Type Lysozyme from the upper Gastrointestinal Tract of Opisthocomus hoatzin, the Stinkbird.
Int J Mol Sci, 20, 2019
2Z31
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Crystal structure of immune receptor complex
Descriptor: H-2 class II histocompatibility antigen, A-U alpha chain, A-U beta chain precursor, ...
Authors:Feng, D, Bond, C.J, Ely, L.K, Garcia, K.C.
Deposit date:2007-05-30
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural evidence for a germline-encoded T cell receptor-major histocompatibility complex interaction 'codon'
Nat.Immunol., 8, 2007
2Z35
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Crystal structure of immune receptor
Descriptor: T-cell receptor alpha-chain, T-cell receptor beta-chain
Authors:Feng, D, Bond, C.J, Ely, L.K, Garcia, K.C.
Deposit date:2007-06-01
Release date:2007-10-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural evidence for a germline-encoded T cell receptor-major histocompatibility complex interaction 'codon'
Nat.Immunol., 8, 2007
8QA4
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MTHFR + SAH symmetric dis-inhibited state
Descriptor: Methylenetetrahydrofolate reductase (NADPH), S-ADENOSYL-L-HOMOCYSTEINE
Authors:Blomgren, L.K.M, Yue, W.W, Froese, D.S, McCorvie, T.J.
Deposit date:2023-08-22
Release date:2023-11-08
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Dynamic inter-domain transformations mediate the allosteric regulation of human 5, 10-methylenetetrahydrofolate reductase.
Nat Commun, 15, 2024
8QA6
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MTHFR + SAM inhibited state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate reductase (NADPH), S-ADENOSYLMETHIONINE
Authors:Blomgren, L.K.M, Yue, W.W, Froese, D.S, McCorvie, T.J.
Deposit date:2023-08-22
Release date:2023-11-08
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Dynamic inter-domain transformations mediate the allosteric regulation of human 5, 10-methylenetetrahydrofolate reductase.
Nat Commun, 15, 2024
8QA5
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MTHFR + SAH asymmetric dis-inhibited state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate reductase (NADPH), S-ADENOSYL-L-HOMOCYSTEINE
Authors:Blomgren, L.K.M, Yue, W.W, Froese, D.S, McCorvie, T.J.
Deposit date:2023-08-22
Release date:2023-11-08
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Dynamic inter-domain transformations mediate the allosteric regulation of human 5, 10-methylenetetrahydrofolate reductase.
Nat Commun, 15, 2024
1SY6
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BU of 1sy6 by Molmil
Crystal Structure of CD3gammaepsilon Heterodimer in Complex with OKT3 Fab Fragment
Descriptor: OKT3 Fab heavy chain, OKT3 Fab light chain, T-cell surface glycoprotein CD3 gamma/epsilon chain
Authors:Kjer-Nielsen, L, Dunstone, M.A, Kostenko, L, Ely, L.K, Beddoe, T, Misfud, N.A, Purcell, A.W, Brooks, A.G, McCluskey, J, Rossjohn, J.
Deposit date:2004-03-31
Release date:2004-05-25
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the human T cell receptor CD3(epsilon)(gamma) heterodimer complexed to the therapeutic mAb OKT3.
Proc.Natl.Acad.Sci.USA, 101, 2004
1SZR
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A Dimer interface mutant of ornithine decarboxylase reveals structure of gem diamine intermediate
Descriptor: N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE, Ornithine decarboxylase, ...
Authors:Jackson, L.K, Baldwin, J, Goldsmith, E.J, Phillips, M.A.
Deposit date:2004-04-06
Release date:2004-10-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Multiple active site conformations revealed by distant site mutation in ornithine decarboxylase
Biochemistry, 43, 2004
1SYV
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HLA-B*4405 complexed to the dominant self ligand EEFGRAYGF
Descriptor: Beta-2-microglobulin, MHC class I antigen, major histocompatibility complex, ...
Authors:Zernich, D, Purcell, A.W, Macdonald, W.A, Kjer-Nielsen, L, Ely, L.K, Laham, N, Crockford, T, Mifsud, N.A, Tait, B.D, Holdsworth, R, Brooks, A.G, Bottomley, S.P, Beddoe, T, Peh, C.A, Rossjohn, J, McCluskey, J.
Deposit date:2004-04-02
Release date:2004-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Natural HLA class I polymorphism controls the pathway of antigen presentation and susceptibility to viral evasion
J.Exp.Med., 200, 2004
8Q3E
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High Resolution Structure of Nucleosome Core with Bound Foamy Virus GAG Peptide
Descriptor: DNA (145-MER), GLY-GLY-TYR-ASN-LEU-ARG-PRO-ARG-THR-TYR-GLN-PRO-GLN-ARG-TYR-GLY-GLY-GLY, Histone H2A type 1-B/E, ...
Authors:De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A.
Deposit date:2023-08-04
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.174 Å)
Cite:Viral peptide conjugates for metal-warhead delivery to chromatin.
Rsc Adv, 14, 2024
8Q3M
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Structure of Nucleosome Core with a Bound Kaposi Sarcoma Associated Herpesvirus LANA Peptide Having a Methionine to Ornithine Substitution
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
Authors:De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A.
Deposit date:2023-08-04
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Viral peptide conjugates for metal-warhead delivery to chromatin.
Rsc Adv, 14, 2024
8Q36
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Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Foamy Virus GAG Peptide-Au[I] Compound)
Descriptor: DNA (145-MER), GAG structural protein, Histone H2A type 1-B/E, ...
Authors:De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A.
Deposit date:2023-08-03
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Viral peptide conjugates for metal-warhead delivery to chromatin.
Rsc Adv, 14, 2024
8Q3X
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Structure of Nucleosome Core with a Bound Metallopeptide Conjugate (Kaposi Sarcoma Associated Herpesvirus LANA Peptide-Au[I] Compound)
Descriptor: 4-diphenylphosphanylbenzoic acid, DNA (145-MER), GOLD ION, ...
Authors:De Falco, L, Batchelor, L.K, Dyson, P.J, Davey, C.A.
Deposit date:2023-08-04
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Viral peptide conjugates for metal-warhead delivery to chromatin.
Rsc Adv, 14, 2024
1SYS
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BU of 1sys by Molmil
Crystal structure of HLA, B*4403, and peptide EEPTVIKKY
Descriptor: Beta-2-microglobulin, Sorting nexin 5, leukocyte antigen (HLA) class I molecule
Authors:Zernich, D, Purcell, A.W, Macdonald, W.A, Kjer-Nielsen, L, Ely, L.K, Laham, N, Crockford, T, Mifsud, N.A, Tait, B.D, Holdsworth, R, Brooks, A.G, Bottomley, S.P, Beddoe, T, Peh, C.A, Rossjohn, J, McCluskey, J.
Deposit date:2004-04-01
Release date:2004-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Natural HLA class I polymorphism controls the pathway of antigen presentation and susceptibility to viral evasion
J.Exp.Med., 200, 2004
6DBY
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BU of 6dby by Molmil
Crystal structure of Nudix 1 from Arabidopsis thaliana
Descriptor: MAGNESIUM ION, Nudix hydrolase 1
Authors:Noel, J.P, Thomas, S.T, Dudareva, N, Henry, L.K.
Deposit date:2018-05-03
Release date:2018-09-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Contribution of isopentenyl phosphate to plant terpenoid metabolism.
Nat Plants, 4, 2018
6DNZ
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Trypanosoma brucei PRMT1 enzyme-prozyme heterotetrameric complex with AdoHcy
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Arginine N-methyltransferase, putative, ...
Authors:Hashimoto, H, Kafkova, L, Jordan, K, Read, L.K, Debler, E.W.
Deposit date:2018-06-08
Release date:2019-06-12
Last modified:2020-02-12
Method:X-RAY DIFFRACTION (2.384 Å)
Cite:Structural Basis of Protein Arginine Methyltransferase Activation by a Catalytically Dead Homolog (Prozyme).
J.Mol.Biol., 432, 2020
6DBZ
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Crystal structure of Nudix 1 from Arabidopsis thaliana complexed with isopentenyl diphosphate
Descriptor: ISOPENTYL PYROPHOSPHATE, MAGNESIUM ION, Nudix hydrolase 1
Authors:Noel, J.P, Thomas, S.T, Dudareva, N, Henry, L.K.
Deposit date:2018-05-03
Release date:2018-09-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Contribution of isopentenyl phosphate to plant terpenoid metabolism.
Nat Plants, 4, 2018
7RL3
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BU of 7rl3 by Molmil
Structure of Drosophila melanogaster Plk4 PB3
Descriptor: Serine/threonine-protein kinase PLK4
Authors:Slep, K.C, Slevin, L.K.
Deposit date:2021-07-23
Release date:2022-08-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Polo-like kinase 4 homodimerization and condensate formation regulate its own protein levels but are not required for centriole assembly.
Mol.Biol.Cell, 34, 2023
5TJ2
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Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Ser306 fused to maltose binding protein
Descriptor: Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Chao, L.K, Herzberg, O.
Deposit date:2016-10-03
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Human Gasdermin-B and disease: Sulfatide Binding, Caspase cleavage, and Structural impact of Asthma- and IBS-Associated Polymorphism
Proc.Natl.Acad.Sci.Usa, 2017
5FRE
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BU of 5fre by Molmil
Characterization of a novel CBM from Clostridium perfringens
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, ACETATE ION, CALCIUM ION, ...
Authors:Ribeiro, J, Pau, W, Pifferi, C, Renaudet, O, Varrot, A, Mahal, L.K, Imberty, A.
Deposit date:2015-12-17
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Characterization of a High-Affinity Sialic Acid-Specific Cbm40 from Clostridium Perfringens and Engineering of a Divalent Form.
Biochem.J., 473, 2016
5TJ4
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Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Pro306 fused to maltose binding protein
Descriptor: SODIUM ION, Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Chao, L.K, Herzberg, O.
Deposit date:2016-10-03
Release date:2017-02-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Gene polymorphism linked to increased asthma and IBD risk alters gasdermin-B structure, a sulfatide and phosphoinositide binding protein.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7RSJ
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Structure of the VPS34 kinase domain with compound 14
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, N-{4-[(7R,8R)-4-oxo-7-(propan-2-yl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazin-2-yl]pyridin-2-yl}cyclopropanecarboxamide, ...
Authors:Hu, D.X, Patel, S, Chen, H, Wang, S, Staben, S, Dimitrova, Y.N, Wallweber, H.A, Lee, J.Y, Chan, G.K.Y, Sneeringer, C.J, Prangley, M.S, Moffat, J.G, Wu, C, Schutt, L.K, Salphati, L, Pang, J, McNamara, E, Huang, H, Chen, Y, Wang, Y, Zhao, W, Lim, J, Murthy, A, Siu, M.
Deposit date:2021-08-11
Release date:2021-11-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.881 Å)
Cite:Structure-Based Design of Potent, Selective, and Orally Bioavailable VPS34 Kinase Inhibitors.
J.Med.Chem., 65, 2022
7RSP
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Structure of the VPS34 kinase domain with compound 14
Descriptor: (7R,8R)-2-[(3R)-3-methylmorpholin-4-yl]-7-(propan-2-yl)-6,7-dihydropyrazolo[1,5-a]pyrazin-4(5H)-one, GLYCEROL, Phosphatidylinositol 3-kinase catalytic subunit type 3
Authors:Hu, D.X, Patel, S, Chen, H, Wang, S, Staben, S, Dimitrova, Y.N, Wallweber, H.A, Lee, J.Y, Chan, G.K.Y, Sneeringer, C.J, Prangley, M.S, Moffat, J.G, Wu, C, Schutt, L.K, Salphati, L, Pang, J, McNamara, E, Huang, H, Chen, Y, Wang, Y, Zhao, W, Lim, J, Murthy, A, Siu, M.
Deposit date:2021-08-11
Release date:2021-11-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structure-Based Design of Potent, Selective, and Orally Bioavailable VPS34 Kinase Inhibitors.
J.Med.Chem., 65, 2022
7RSV
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Structure of the VPS34 kinase domain with compound 5
Descriptor: (5aS,8aR,9S)-2-[(3R)-3-methylmorpholin-4-yl]-5,5a,6,7,8,8a-hexahydro-4H-cyclopenta[e]pyrazolo[1,5-a]pyrazin-4-one, GLYCEROL, Phosphatidylinositol 3-kinase catalytic subunit type 3, ...
Authors:Hu, D.X, Patel, S, Chen, H, Wang, S, Staben, S, Dimitrova, Y.N, Wallweber, H.A, Lee, J.Y, Chan, G.K.Y, Sneeringer, C.J, Prangley, M.S, Moffat, J.G, Wu, C, Schutt, L.K, Salphati, L, Pang, J, McNamara, E, Huang, H, Chen, Y, Wang, Y, Zhao, W, Lim, J, Murthy, A, Siu, M.
Deposit date:2021-08-11
Release date:2021-11-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure-Based Design of Potent, Selective, and Orally Bioavailable VPS34 Kinase Inhibitors.
J.Med.Chem., 65, 2022
5H0O
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BU of 5h0o by Molmil
Crystal structure of deep-sea thermophilic bacteriophage GVE2 HNH endonuclease with manganese ion
Descriptor: HNH endonuclease, MANGANESE (II) ION
Authors:Zhang, L.K, Xu, D.D, Huang, Y.C, Gong, Y.
Deposit date:2016-10-06
Release date:2017-03-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural and functional characterization of deep-sea thermophilic bacteriophage GVE2 HNH endonuclease.
Sci Rep, 7, 2017

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