1ZKU
 
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2BSG
 | | The modeled structure of fibritin (gpwac) of bacteriophage T4 based on cryo-EM reconstruction of the extended tail of bacteriophage T4 | | Descriptor: | FIBRITIN | | Authors: | Kostyuchenko, V.A, Chipman, P.R, Leiman, P.G, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2005-05-20 | | Release date: | 2005-09-21 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (15 Å) | | Cite: | The Tail Structure of Bacteriophage T4 and its Mechanism of Contraction.
Nat.Struct.Mol.Biol., 12, 2005
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2YEW
 | | Modeling Barmah Forest virus structural proteins | | Descriptor: | CAPSID PROTEIN, E1 ENVELOPE GLYCOPROTEIN, E2 ENVELOPE GLYCOPROTEIN | | Authors: | Kostyuchenko, V.A, Jakana, J, Liu, X, Haddow, A.D, Aung, M, Weaver, S.C, Chiu, W, Lok, S.M. | | Deposit date: | 2011-03-31 | | Release date: | 2012-04-18 | | Last modified: | 2024-10-23 | | Method: | ELECTRON MICROSCOPY (5 Å) | | Cite: | The Structure of Barmah Forest Virus as Revealed by Cryo-Electron Microscopy at a 6-Angstrom Resolution Has Detailed Transmembrane Protein Architecture and Interactions.
J.Virol., 85, 2011
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1S2E
 | | BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR, ALTERNATIVE FIT OF THE FIRST 19 RESIDUES | | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Baseplate structural protein Gp9 | | Authors: | Kostyuchenko, V.A, Navruzbekov, G.A, Kurochkina, L.P, Strelkov, S.V, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2004-01-08 | | Release date: | 2004-01-13 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | The Structure of Bacteriophage T4 Gene Product 9: The Trigger for Tail Contraction
Structure Fold.Des., 7, 1999
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5IZ7
 | | Cryo-EM structure of thermally stable Zika virus strain H/PF/2013 | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, structural protein E, structural protein M | | Authors: | Kostyuchenko, V.A, Zhang, S, Fibriansah, G, Lok, S.M. | | Deposit date: | 2016-03-25 | | Release date: | 2016-05-25 | | Last modified: | 2024-10-23 | | Method: | ELECTRON MICROSCOPY (3.7 Å) | | Cite: | Structure of the thermally stable Zika virus
Nature, 533, 2016
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1PDF
 | | Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex | | Descriptor: | Baseplate structural protein Gp11 | | Authors: | Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2003-05-19 | | Release date: | 2003-09-09 | | Last modified: | 2024-02-14 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | Three-dimensional structure of bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
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1PDM
 | | Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate | | Descriptor: | Baseplate structural protein Gp8 | | Authors: | Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2003-05-19 | | Release date: | 2003-09-09 | | Last modified: | 2024-02-14 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
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1PDL
 | | Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate | | Descriptor: | Tail-associated lysozyme | | Authors: | Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2003-05-19 | | Release date: | 2003-09-09 | | Last modified: | 2024-02-14 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
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1PDJ
 | | Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate | | Descriptor: | Baseplate structural protein Gp27 | | Authors: | Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2003-05-19 | | Release date: | 2003-09-09 | | Last modified: | 2024-02-14 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
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1PDP
 | | Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction | | Descriptor: | Baseplate structural protein Gp9 | | Authors: | Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2003-05-19 | | Release date: | 2003-09-09 | | Last modified: | 2024-02-14 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
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4B03
 | | 6A Electron cryomicroscopy structure of immature Dengue virus serotype 1 | | Descriptor: | DENGUE VIRUS 1 E PROTEIN, DENGUE VIRUS 1 PRM PROTEIN | | Authors: | Kostyuchenko, V.A, Zhang, Q, Tan, L.C, Ng, T.S, Lok, S.M. | | Deposit date: | 2012-06-28 | | Release date: | 2013-06-05 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (6 Å) | | Cite: | Immature and Mature Dengue Serotype 1 Virus Structures Provide Insight Into the Maturation Process.
J.Virol., 87, 2013
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4CCT
 | | Dengue 1 cryo-EM reconstruction | | Descriptor: | DENGUE VIRUS 1 E PROTEIN, DENGUE VIRUS 1 M PROTEIN | | Authors: | Kostyuchenko, V.A, Zhang, Q, Tan, J.L, Ng, T.S, Lok, S.M. | | Deposit date: | 2013-10-28 | | Release date: | 2013-11-06 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (4.5 Å) | | Cite: | Immature and Mature Dengue Serotype 1 Virus Structures Provide Insight Into the Maturation Process.
J.Virol., 87, 2013
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4CBF
 | | Near-atomic resolution cryo-EM structure of Dengue serotype 4 virus | | Descriptor: | ENVELOPE PROTEIN E, M PROTEIN | | Authors: | Kostyuchenko, V.A, Chew, P.L, Ng, T.S, Lok, S.M. | | Deposit date: | 2013-10-14 | | Release date: | 2013-11-06 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (4.1 Å) | | Cite: | Near-Atomic Resolution Cryo-Electron Microscopic Structure of Dengue Serotype 4 Virus.
J.Virol., 88, 2014
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1PDI
 | | Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate | | Descriptor: | Short tail fiber protein | | Authors: | Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2003-05-19 | | Release date: | 2003-09-09 | | Last modified: | 2024-02-14 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | Three-dimensional structure of bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
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1QEX
 | | BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9), THE TRIGGER OF TAIL CONTRACTION AND THE LONG TAIL FIBERS CONNECTOR | | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, PROTEIN (BACTERIOPHAGE T4 GENE PRODUCT 9 (GP9)) | | Authors: | Kostyuchenko, V.A, Navruzbekov, G.A, Kurochkina, L.P, Strelkov, S.V, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 1999-03-30 | | Release date: | 1999-10-05 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | The structure of bacteriophage T4 gene product 9: the trigger for tail contraction.
Structure Fold.Des., 7, 1999
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3J6U
 | | Cryo-EM structure of Dengue virus serotype 3 in complex with human antibody 5J7 Fab | | Descriptor: | Fab 5J7 heavy chain, Fab 5J7 light chain, envelope protein, ... | | Authors: | Fibriansah, G, Tan, J.L, Smith, S.A, de Alwis, R, Ng, T.-S, Kostyuchenko, V.A, Kukkaro, P, de Silva, A.M, Crowe Jr, J.E, Lok, S.-M. | | Deposit date: | 2014-03-26 | | Release date: | 2015-03-04 | | Last modified: | 2024-02-21 | | Method: | ELECTRON MICROSCOPY (9 Å) | | Cite: | A highly potent human antibody neutralizes dengue virus serotype 3 by binding across three surface proteins.
Nat Commun, 6, 2015
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5A1Z
 | | Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 complexed with human antibody 2D22 Fab at 37 degrees C | | Descriptor: | ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 - HEAVY CHAIN, ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 - LIGHT CHAIN, ENVELOPE PROTEIN, ... | | Authors: | Fibriansah, G, Ibarra, K.D, Ng, T.S, Smith, S.A, Tan, J.L, Lim, X.N, Ooi, J.S.G, Kostyuchenko, V.A, Wang, J, de Silva, A.M, Harris, E, Crowe Jr, J.E, Lok, S.M. | | Deposit date: | 2015-05-06 | | Release date: | 2015-07-15 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (6.9 Å) | | Cite: | Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers.
Science, 349, 2015
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1K28
 | | The Structure of the Bacteriophage T4 Cell-Puncturing Device | | Descriptor: | BASEPLATE STRUCTURAL PROTEIN GP27, PHOSPHATE ION, POTASSIUM ION, ... | | Authors: | Kanamaru, S, Leiman, P.G, Kostyuchenko, V.A, Chipman, P.R, Mesyanzhinov, V.V, Arisaka, F, Rossmann, M.G. | | Deposit date: | 2001-09-26 | | Release date: | 2002-02-06 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Structure of the cell-puncturing device of bacteriophage T4.
Nature, 415, 2002
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6LNU
 | | Cryo-EM structure of immature Zika virus | | Descriptor: | Genome polyprotein | | Authors: | Tan, T.Y, Fibriansah, G, Kostyuchenko, V.A, Ng, T.S, Lim, X.X, Lim, X.N, Shi, J, Morais, M.C, Corti, D, Lok, S.M. | | Deposit date: | 2020-01-02 | | Release date: | 2020-02-26 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (9 Å) | | Cite: | Capsid protein structure in Zika virus reveals the flavivirus assembly process.
Nat Commun, 11, 2020
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6LNT
 | | Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab | | Descriptor: | Envelope protein, Fab DV62.5 heavy-chain variable region, Fab DV62.5 light-chain variable region, ... | | Authors: | Tan, T.Y, Fibriansah, G, Kostyuchenko, V.A, Ng, T.S, Lim, X.X, Lim, X.N, Shi, J, Morais, M.C, Corti, D, Lok, S.M. | | Deposit date: | 2020-01-02 | | Release date: | 2020-02-26 | | Last modified: | 2024-03-27 | | Method: | ELECTRON MICROSCOPY (8 Å) | | Cite: | Capsid protein structure in Zika virus reveals the flavivirus assembly process.
Nat Commun, 11, 2020
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2NSU
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4UIF
 | | Cryo-EM structure of Dengue virus serotype 2 in complex with antigen-binding fragments of human antibody 2D22 | | Descriptor: | ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 - HEAVY CHAIN, ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 - LIGHT CHAIN, DENGUE VIRUS SEROTYPE 2 STRAIN PVP94 07 - ENVELOPE PROTEIN, ... | | Authors: | Fibriansah, G, Ibarra, K.D, Ng, T.-S, Smith, S.A, Tan, J.L, Lim, X.-N, Ooi, J.S.G, Kostyuchenko, V.A, Wang, J, de Silva, A.M, Harris, E, Crowe Junior, J.E, Lok, S.-M. | | Deposit date: | 2015-03-30 | | Release date: | 2015-07-15 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (6.5 Å) | | Cite: | Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers.
Science, 349, 2015
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4UIH
 | | Cryo-EM structure of Dengue virus serotype 2 strain New Guinea-C complexed with human antibody 2D22 Fab at 37 degree C. The Fab molecules were added to the virus before 37 degree C incubation. | | Descriptor: | ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 -HEAVY CHAIN, ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 -LIGHT CHAIN, DENGUE VIRUS SEROTYPE 2 STRAIN NEW GUINEA-C E PROTEIN ECTODOMAIN | | Authors: | Fibriansah, G, Ibarra, K.D, Ng, T.-S, Smith, S.A, Tan, J.L, Lim, X.N, Ooi, J.S.G, Kostyuchenko, V.A, Wang, J, de Silva, A.M, Harris, E, Crowe, J.E, Lok, S.-M. | | Deposit date: | 2015-03-30 | | Release date: | 2015-07-15 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (20 Å) | | Cite: | Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers.
Science, 349, 2015
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1EL6
 | | STRUCTURE OF BACTERIOPHAGE T4 GENE PRODUCT 11, THE INTERFACE BETWEEN THE BASEPLATE AND SHORT TAIL FIBERS | | Descriptor: | BASEPLATE STRUCTURAL PROTEIN GP11 | | Authors: | Leiman, P.G, Kostyuchenko, V.A, Schneider, M.M, Kurochkina, L.P, Mesyanzhinov, V.V, Rossmann, M.G. | | Deposit date: | 2000-03-13 | | Release date: | 2000-04-05 | | Last modified: | 2024-02-07 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structure of bacteriophage T4 gene product 11, the interface between the baseplate and short tail fibers.
J.Mol.Biol., 301, 2000
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3ZKO
 | | The structure of ''breathing'' dengue virus. | | Descriptor: | ENVELOPE GLYCOPROTEIN | | Authors: | Fibriansah, G, Ng, T.S, Kostyuchenko, V.A, Lee, S, Wang, J, Lok, S.M. | | Deposit date: | 2013-01-24 | | Release date: | 2013-05-15 | | Last modified: | 2024-05-08 | | Method: | ELECTRON MICROSCOPY (13.7 Å) | | Cite: | Structural Changes of Dengue Virus When Exposed to 37 Degrees C.
J.Virol., 87, 2013
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