Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 319 results

5HZ2
DownloadVisualize
BU of 5hz2 by Molmil
Crystal structure of PhaC1 from Ralstonia eutropha
Descriptor: GLYCEROL, Poly-beta-hydroxybutyrate polymerase, SULFATE ION
Authors:Kim, J, Kim, K.-J.
Deposit date:2016-02-02
Release date:2016-12-07
Last modified:2017-04-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Ralstonia eutropha polyhydroxyalkanoate synthase C-terminal domain and reaction mechanisms.
Biotechnol J, 12, 2017
7YQ3
DownloadVisualize
BU of 7yq3 by Molmil
human insulin receptor bound with A43 DNA aptamer and insulin
Descriptor: IR-A43 aptamer, Insulin A chain, Insulin, ...
Authors:Kim, J, Yunn, N, Ryu, S, Cho, Y.
Deposit date:2022-08-05
Release date:2022-11-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Functional selectivity of insulin receptor revealed by aptamer-trapped receptor structures.
Nat Commun, 13, 2022
7YQ4
DownloadVisualize
BU of 7yq4 by Molmil
human insulin receptor bound with A62 DNA aptamer and insulin - locally refined
Descriptor: IR-A62 aptamer, Insulin A chain, Insulin, ...
Authors:Kim, J, Yunn, N, Ryu, S, Cho, Y.
Deposit date:2022-08-05
Release date:2022-11-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.95 Å)
Cite:Functional selectivity of insulin receptor revealed by aptamer-trapped receptor structures.
Nat Commun, 13, 2022
7YQ6
DownloadVisualize
BU of 7yq6 by Molmil
human insulin receptor bound with A62 DNA aptamer
Descriptor: IR-A62 aptamer, Isoform Short of Insulin receptor
Authors:Kim, J, Yunn, N, Ryu, S, Cho, Y.
Deposit date:2022-08-05
Release date:2022-11-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:Functional selectivity of insulin receptor revealed by aptamer-trapped receptor structures.
Nat Commun, 13, 2022
7YQ5
DownloadVisualize
BU of 7yq5 by Molmil
human insulin receptor bound with A62 DNA aptamer and insulin
Descriptor: IR-A62 aptamer, Insulin A chain, Insulin, ...
Authors:Kim, J, Yunn, N, Ryu, S, Cho, Y.
Deposit date:2022-08-05
Release date:2022-11-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.27 Å)
Cite:Functional selectivity of insulin receptor revealed by aptamer-trapped receptor structures.
Nat Commun, 13, 2022
4GEK
DownloadVisualize
BU of 4gek by Molmil
Crystal Structure of wild-type CmoA from E.coli
Descriptor: (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, SULFATE ION, tRNA (cmo5U34)-methyltransferase
Authors:Kim, J, Toro, R, Bonanno, J.B, Bhosle, R, Sampathkumar, P, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-08-02
Release date:2012-10-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function
Nature, 498, 2013
4PTS
DownloadVisualize
BU of 4pts by Molmil
Crystal structure of a glutathione transferase from Gordonia bronchialis DSM 43247, target EFI-507405
Descriptor: glutathione S-transferase
Authors:Kim, J, Toro, R, Bhosle, R, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-03-11
Release date:2014-04-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Crystal structure of a glutathione transferase from Gordonia bronchialis DSM 43247, target EFI-507405
To be Published
4PUA
DownloadVisualize
BU of 4pua by Molmil
Crystal Structure Of glutathione transferase YghU from Streptococcus pneumoniae ATCC 700669, complexed with glutathione, Target EFI-507284
Descriptor: GLUTATHIONE, glutathione S-transferase
Authors:Kim, J, Toro, R, Bhosle, R, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Stead, M, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-03-12
Release date:2014-04-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.708 Å)
Cite:Crystal Structure Of glutathione transferase YghU from Streptococcus pneumoniae ATCC 700669, complexed with glutathione, Target EFI-507284
To be Published
1YF2
DownloadVisualize
BU of 1yf2 by Molmil
Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications
Descriptor: Type I restriction-modification enzyme, S subunit
Authors:Kim, J.S, Degiovanni, A, Jancarik, J, Adams, P.D, Yokota, H.A, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-12-30
Release date:2005-02-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications.
Proc.Natl.Acad.Sci.USA, 102, 2005
6L5H
DownloadVisualize
BU of 6l5h by Molmil
Crystal structure of human rootletin 1108-1200
Descriptor: Rootletin
Authors:Kim, J, Choi, H.J.
Deposit date:2019-10-23
Release date:2020-07-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Identification of a Structurally Dynamic Domain for Oligomer Formation in Rootletin.
J.Mol.Biol., 432, 2020
6L5J
DownloadVisualize
BU of 6l5j by Molmil
Crystal structure of human rootletin 1108-1317
Descriptor: Rootletin
Authors:Kim, J, Choi, H.J.
Deposit date:2019-10-23
Release date:2020-07-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Identification of a Structurally Dynamic Domain for Oligomer Formation in Rootletin.
J.Mol.Biol., 432, 2020
8K6X
DownloadVisualize
BU of 8k6x by Molmil
Crystal structure of E.coli Cyanase complex with cyanate and bicarbonate
Descriptor: CARBONATE ION, Cyanate hydratase, SULFATE ION, ...
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6U
DownloadVisualize
BU of 8k6u by Molmil
Serial Femtosecond X-ray structure of E.coli Cyanase with un-modeled density at active site
Descriptor: Cyanate hydratase, SULFATE ION
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6S
DownloadVisualize
BU of 8k6s by Molmil
Crystal structure of E.coli Cyanase complex with bicarbonate
Descriptor: CARBONATE ION, Cyanate hydratase, SULFATE ION
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6G
DownloadVisualize
BU of 8k6g by Molmil
Crystal structure of E.coli Cyanase
Descriptor: Cyanate hydratase, SULFATE ION
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8K6H
DownloadVisualize
BU of 8k6h by Molmil
Crystal structure of e.coli cyanase complex with cyanate
Descriptor: Cyanate hydratase, SULFATE ION, cyanic acid
Authors:Kim, J, Nam, K.H, Cho, Y.
Deposit date:2023-07-25
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural mechanism of Escherichia coli cyanase.
Acta Crystallogr D Struct Biol, 79, 2023
8GUY
DownloadVisualize
BU of 8guy by Molmil
human insulin receptor bound with two insulin molecules
Descriptor: Insulin A chain, Insulin, isoform 2, ...
Authors:Kim, J, Yunn, N, Ryu, S, Cho, Y.
Deposit date:2022-09-14
Release date:2022-11-09
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:Functional selectivity of insulin receptor revealed by aptamer-trapped receptor structures.
Nat Commun, 13, 2022
7EVF
DownloadVisualize
BU of 7evf by Molmil
Plant growth-promoting factor YxaL mutant from Bacillus velezensis - T175W/S213G/W215A
Descriptor: PQQ_3 domain-containing protein
Authors:Kim, J, Ha, N.-C.
Deposit date:2021-05-21
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the plant growth-promoting factor YxaL from the rhizobacterium Bacillus velezensis and its application to protein engineering.
Acta Crystallogr D Struct Biol, 78, 2022
7EQ5
DownloadVisualize
BU of 7eq5 by Molmil
Plant growth-promoting factor YxaL mutant from Bacillus velezensis - T175W/W215G
Descriptor: Membrane associated protein kinase with beta-propeller domain, pyrrolo-quinoline quinone beta-propeller repeat
Authors:Kim, J, Ha, N.-C.
Deposit date:2021-04-30
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the plant growth-promoting factor YxaL from the rhizobacterium Bacillus velezensis and its application to protein engineering.
Acta Crystallogr D Struct Biol, 78, 2022
8JQV
DownloadVisualize
BU of 8jqv by Molmil
Hen egg-white lysozyme solved from 1D fixed target delivery system
Descriptor: Lysozyme C
Authors:Kim, J, Park, S, Park, J.
Deposit date:2023-06-15
Release date:2023-09-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Application of Micro-Tubing Reeling System to Serial Femtosecond Crystallography
Photonics, 2024
8H1A
DownloadVisualize
BU of 8h1a by Molmil
Crystal structure of MnmM from S. aureus in apo state (1.44 A)
Descriptor: rRNA methylase YtqB
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-01
Release date:2023-01-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
8H27
DownloadVisualize
BU of 8h27 by Molmil
Crystal structure of MnmM from S. aureus complexed with SAM (2.04 A)
Descriptor: 16S rRNA (Cytosine(1402)-N(4))-methyltransferase, S-ADENOSYLMETHIONINE
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-05
Release date:2023-01-25
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
8H26
DownloadVisualize
BU of 8h26 by Molmil
Crystal structure of MnmM from S. aureus complexed with SAH (1.50 A)
Descriptor: 16S rRNA (Cytosine(1402)-N(4))-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-05
Release date:2023-01-18
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of MnmM from S. aureus complexed with SAH (1.50 A)
To Be Published
8H0S
DownloadVisualize
BU of 8h0s by Molmil
Crystal structure of MnmM from B. subtilis complexed with Gln-TTG anti-codon stem loop and SAM (2.90 A)
Descriptor: Putative rRNA methylase YtqB, RNA (5'-R(*AP*CP*GP*GP*AP*CP*UP*UP*UP*GP*AP*CP*UP*CP*CP*GP*U)-3'), S-ADENOSYLMETHIONINE
Authors:Kim, J, Lee, J, Cho, G.
Deposit date:2022-09-30
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
8H0T
DownloadVisualize
BU of 8h0t by Molmil
Crystal structure of MnmM from B. subtilis complexed with SAH (1.17 A)
Descriptor: Putative rRNA methylase YtqB, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Kim, J, Lee, J, Cho, G.
Deposit date:2022-09-30
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon