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7YQ4

human insulin receptor bound with A62 DNA aptamer and insulin - locally refined

Summary for 7YQ4
Entry DOI10.2210/pdb7yq4/pdb
EMDB information34019
DescriptorIsoform Short of Insulin receptor, Insulin, isoform 2, Insulin A chain, ... (4 entities in total)
Functional Keywordsreceptor-ligand complex_b_local, structural protein
Biological sourceHomo sapiens (human)
More
Total number of polymer chains5
Total formula weight221017.90
Authors
Kim, J.,Yunn, N.,Ryu, S.,Cho, Y. (deposition date: 2022-08-05, release date: 2022-11-09, Last modification date: 2024-10-30)
Primary citationKim, J.,Yunn, N.O.,Park, M.,Kim, J.,Park, S.,Kim, Y.,Noh, J.,Ryu, S.H.,Cho, Y.
Functional selectivity of insulin receptor revealed by aptamer-trapped receptor structures.
Nat Commun, 13:6500-6500, 2022
Cited by
PubMed Abstract: Activation of insulin receptor (IR) initiates a cascade of conformational changes and autophosphorylation events. Herein, we determined three structures of IR trapped by aptamers using cryo-electron microscopy. The A62 agonist aptamer selectively activates metabolic signaling. In the absence of insulin, the two A62 aptamer agonists of IR adopt an insulin-accessible arrowhead conformation by mimicking site-1/site-2' insulin coordination. Insulin binding at one site triggers conformational changes in one protomer, but this movement is blocked in the other protomer by A62 at the opposite site. A62 binding captures two unique conformations of IR with a similar stalk arrangement, which underlie Tyr1150 mono-phosphorylation (m-pY1150) and selective activation for metabolic signaling. The A43 aptamer, a positive allosteric modulator, binds at the opposite side of the insulin-binding module, and stabilizes the single insulin-bound IR structure that brings two FnIII-3 regions into closer proximity for full activation. Our results suggest that spatial proximity of the two FnIII-3 ends is important for m-pY1150, but multi-phosphorylation of IR requires additional conformational rearrangement of intracellular domains mediated by coordination between extracellular and transmembrane domains.
PubMed: 36310231
DOI: 10.1038/s41467-022-34292-8
PDB entries with the same primary citation
Experimental method
ELECTRON MICROSCOPY (3.95 Å)
Structure validation

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