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PDB: 651 件

2LRH
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BU of 2lrh by Molmil
Solution NMR structure of de novo designed protein, p-loop ntpase fold, Northeast Structural Genomics Consortium target or137
分子名称: De novo designed protein
著者Liu, G, Koga, N, Koga, R, Xiao, R, Lee, H, Janjua, H, Kohan, E, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2012-03-30
公開日2012-07-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR structure of de novo designed protein, p-loop ntpase fold, Northeast Structural Genomics Consortium target or137
To be Published
3NXF
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BU of 3nxf by Molmil
Robust computational design, optimization, and structural characterization of retroaldol enzymes
分子名称: Retro-Aldolase, SULFATE ION
著者Althoff, E.A, Jiang, L, Wang, L, Lassila, J.K, Moody, J, Bolduc, J, Wang, Z.Z, Smith, M, Hari, S, Herschlag, D, Stoddard, B.L, Baker, D.
登録日2010-07-13
公開日2011-06-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural analyses of covalent enzyme-substrate analog complexes reveal strengths and limitations of de novo enzyme design.
J.Mol.Biol., 415, 2012
3NNG
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BU of 3nng by Molmil
Crystal structure of the F5/8 type C domain of Q5LFR2_BACFN protein from Bacteroides fragilis. Northeast Structural Genomics Consortium Target BfR258E
分子名称: CALCIUM ION, uncharacterized protein
著者Vorobiev, S, Su, M, Dimaio, F, Baker, D, Seetharaman, J, Janjua, J, Xiao, R, Ciccosanti, C, Foote, E.L, Lee, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2010-06-23
公開日2010-08-18
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.177 Å)
主引用文献Crystal structure of the F5/8 type C domain of Q5LFR2_BACFN protein from Bacteroides fragilis.
To be Published
2LND
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BU of 2lnd by Molmil
Solution NMR Structure of DE NOVO DESIGNED PROTEIN, PFK fold, Northeast Structural Genomics Consortium Target OR134
分子名称: DE NOVO DESIGNED PROTEIN, PFK fold
著者Liu, G, Koga, N, Koga, R, Xiao, R, Lee, H, Janjua, H, Kohan, E, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2011-12-23
公開日2012-01-25
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Northeast Structural Genomics Consortium Target OR134
To be Published
2LR0
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BU of 2lr0 by Molmil
Solution NMR structure of de novo designed protein, p-loop ntpase fold, northeast structural genomics consortium target or136
分子名称: P-loop ntpase fold
著者Liu, G, Koga, N, Koga, R, Xiao, R, Lee, H, Janjua, H, Kohan, E, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2012-03-19
公開日2012-07-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR structure of de novo designed protein, p-loop ntpase fold, northeast structural genomics consortium target or136
To be Published
7CBC
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BU of 7cbc by Molmil
Crystal structure of a de novo designed switch protein caging a hemagglutinin binder
分子名称: De novo designed switch protein caging a hemagglutinin binder (sCageHA267_1S), ETHANOL
著者Lee, H, Oh, B.-H, Baker, D.
登録日2020-06-11
公開日2020-12-23
最終更新日2021-03-31
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献De novo design of modular and tunable protein biosensors.
Nature, 591, 2021
4A91
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BU of 4a91 by Molmil
Crystal structure of the glutamyl-queuosine tRNAAsp synthetase from E. coli complexed with L-glutamate
分子名称: GLUTAMIC ACID, GLUTAMYL-Q TRNA(ASP) SYNTHETASE, ZINC ION
著者Blaise, M, Olieric, V, Sauter, C, Lorber, B, Roy, B, Karmakar, S, Banerjee, R, Becker, H.D, Kern, D.
登録日2011-11-22
公開日2012-01-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure of Glutamyl-Queuosine Trnaasp Synthetase Complexed with L-Glutamate: Structural Elements Mediating tRNA-Independent Activation of Glutamate and Glutamylation of Trnaasp Anticodon.
J.Mol.Biol., 381, 2008
2LVB
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BU of 2lvb by Molmil
Solution NMR Structure DE NOVO DESIGNED PFK fold PROTEIN, Northeast Structural Genomics Consortium (NESG) Target OR250
分子名称: DE NOVO DESIGNED PFK fold PROTEIN
著者Liu, G, Koga, N, Koga, R, Xiao, R, Hamilton, K, Kohan, E, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2012-06-30
公開日2012-08-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Principles for designing ideal protein structures.
Nature, 491, 2012
4LED
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BU of 4led by Molmil
The Crystal Structure of Pyocin L1 bound to D-rhamnose at 2.37 Angstroms
分子名称: Pyocin L1, alpha-D-rhamnopyranose
著者Grinter, R, Roszak, A.W, Mccaughey, L, Cogdell, C.J, Walker, D.
登録日2013-06-25
公開日2014-02-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor.
Plos Pathog., 10, 2014
6B73
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BU of 6b73 by Molmil
Crystal Structure of a nanobody-stabilized active state of the kappa-opioid receptor
分子名称: CHOLESTEROL, N-[(5alpha,6beta)-17-(cyclopropylmethyl)-3-hydroxy-7,8-didehydro-4,5-epoxymorphinan-6-yl]-3-iodobenzamide, Nanobody, ...
著者Che, T, Majumdar, S, Zaidi, S.A, Kormos, C, McCorvy, J.D, Wang, S, Mosier, P.D, Uprety, R, Vardy, E, Krumm, B.E, Han, G.W, Lee, M.Y, Pardon, E, Steyaert, J, Huang, X.P, Strachan, R.T, Tribo, A.R, Pasternak, G.W, Carroll, I.F, Stevens, R.C, Cherezov, V, Katritch, V, Wacker, D, Roth, B.L.
登録日2017-10-03
公開日2018-01-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structure of the Nanobody-Stabilized Active State of the Kappa Opioid Receptor.
Cell, 172, 2018
2LV8
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BU of 2lv8 by Molmil
Solution NMR Structure de novo designed rossmann 2x2 fold protein, Northeast Structural Genomics Consortium (NESG) Target OR16
分子名称: De novo designed rossmann 2x2 fold protein
著者Liu, G, Koga, R, Koga, N, Xiao, R, Pederson, K, Hamilton, K, Ciccosanti, C, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2012-06-29
公開日2012-08-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Principles for designing ideal protein structures.
Nature, 491, 2012
4LEA
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BU of 4lea by Molmil
The Crystal Structure of Pyocin L1 bound to D-mannose at 2.55 Angstroms
分子名称: Pyocin L1, beta-D-mannopyranose
著者Grinter, R, Roszak, A.W, Mccaughey, L, Cogdell, C.J, Walker, D.
登録日2013-06-25
公開日2014-02-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor.
Plos Pathog., 10, 2014
4LE7
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BU of 4le7 by Molmil
The Crystal Structure of Pyocin L1 at 2.09 Angstroms
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Pyocin L1
著者Grinter, R, Roszak, A.W, Mccaughey, L, Cogdell, R.J, Walker, D.
登録日2013-06-25
公開日2014-02-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor.
Plos Pathog., 10, 2014
2MBL
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BU of 2mbl by Molmil
Solution NMR Structure of De novo designed Top7 Fold Protein Top7m13, Northeast Structural Genomics Consortium (NESG) Target OR33
分子名称: Top7 Fold Protein Top7m13
著者Liu, G, Zanghellini, A.L, Chan, K, Xiao, R, Janjua, H, Kogan, S, Maglaqui, M, Ciccosanti, C, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2013-08-02
公開日2013-11-13
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of De novo designed Top7 Fold Protein Top7m13, Northeast Structural Genomics Consortium (NESG) Target OR33
To be Published
5TRV
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BU of 5trv by Molmil
Crystal structure of a de novo designed protein with curved beta-sheet
分子名称: DI(HYDROXYETHYL)ETHER, denovo NTF2
著者Basanta, B, Oberdorfer, G, Marcos, E, Chidyausiku, T.M, Sankaran, B, Baker, D.
登録日2016-10-27
公開日2017-01-25
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Principles for designing proteins with cavities formed by curved beta sheets.
Science, 355, 2017
2MR5
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BU of 2mr5 by Molmil
Solution NMR Structure of De novo designed Protein, Northeast Structural Genomics Consortium (NESG) Target OR457
分子名称: De novo designed Protein OR457
著者Pulavarti, S, Nivon, L, Maglaqui, M, Janjua, H, Mao, L, Xiao, R, Kornhaber, G, Baker, D, Montelione, G, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
登録日2014-07-01
公開日2014-09-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of De novo designed Protein, Northeast Structural Genomics Consortium (NESG) Target OR457
To be Published
2KL8
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BU of 2kl8 by Molmil
Solution NMR Structure of de novo designed ferredoxin-like fold protein, Northeast Structural Genomics Consortium Target OR15
分子名称: OR15
著者Liu, G, Koga, N, Jiang, M, Koga, R, Xiao, R, Ciccosanti, C, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2009-06-30
公開日2009-07-28
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Principles for designing ideal protein structures.
Nature, 491, 2012
3O6Y
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BU of 3o6y by Molmil
Robust computational design, optimization, and structural characterization of retroaldol enzymes
分子名称: Retro-Aldolase, SULFATE ION
著者Althoff, E.A, Wang, L, Jiang, L, Moody, J, Bolduc, J, Lassila, J.K, Wang, Z.Z, Smith, M, Hari, S, Herschlag, D, Stoddard, B.L, Baker, D.
登録日2010-07-29
公開日2011-06-29
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.091 Å)
主引用文献Structural analyses of covalent enzyme-substrate analog complexes reveal strengths and limitations of de novo enzyme design.
J.Mol.Biol., 415, 2012
5TPH
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BU of 5tph by Molmil
Crystal structure of a de novo designed protein homodimer with curved beta-sheet
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, de novo NTF2 homodimer
著者Basanta, B, Marcos, E, Oberdorfer, G, Chidyausiku, T.M, Sankaran, B, Baker, D.
登録日2016-10-20
公開日2017-01-25
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Principles for designing proteins with cavities formed by curved beta sheets.
Science, 355, 2017
5TS4
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BU of 5ts4 by Molmil
Crystal structure of a de novo designed protein with curved beta-sheet
分子名称: DI(HYDROXYETHYL)ETHER, denovo NTF2
著者Basanta, B, Oberdorfer, G, Chidyausiku, T.M, Marcos, E, Pereira, J.H, Sankaran, B, Zwart, P.H, Baker, D.
登録日2016-10-27
公開日2017-01-25
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (3.005 Å)
主引用文献Principles for designing proteins with cavities formed by curved beta sheets.
Science, 355, 2017
2L82
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BU of 2l82 by Molmil
Solution NMR Structure of de novo designed protein, P-loop NTPase fold, Northeast Structural Genomics Consortium Target OR32
分子名称: DESIGNED PROTEIN OR32
著者Liu, G, Koga, N, Koga, R, Xiao, R, Hamilton, K, Janjua, H, Tong, S, Acton, T.B, Everett, J, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2010-12-31
公開日2011-02-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Northeast Structural Genomics Consortium Target OR32
To be Published
6C83
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BU of 6c83 by Molmil
Structure of Aurora A (122-403) bound to inhibitory Monobody Mb2 and AMPPCP
分子名称: Aurora kinase A, Mb2 Monobody, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Hoemberger, M, Kutter, S, Zorba, A, Nguyen, V, Shohei, A, Shohei, K, Kern, D.
登録日2018-01-24
公開日2019-02-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Allosteric modulation of a human protein kinase with monobodies.
Proc.Natl.Acad.Sci.USA, 116, 2019
2LN3
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BU of 2ln3 by Molmil
Solution NMR Structure of DE NOVO DESIGNED PROTEIN, IF3-like fold, Northeast Structural Genomics Consortium Target OR135 (CASD target)
分子名称: DE NOVO DESIGNED PROTEIN OR135
著者Liu, G, Koga, R, Koga, N, Xiao, R, Lee, H, Janjua, H, Kohan, E, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2011-12-15
公開日2012-02-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Principles for designing ideal protein structures.
Nature, 491, 2012
2LTA
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BU of 2lta by Molmil
Solution NMR structure of De novo designed protein, rossmann 3x1 fold, Northeast Structural Genomics Consortium target OR157
分子名称: De novo designed protein
著者Liu, G, Koga, R, Koga, N, Xiao, R, Pederson, K, Hamilton, K, Kohan, E, Acton, T.B, Kornhaber, G, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2012-05-15
公開日2012-06-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Principles for designing ideal protein structures.
Nature, 491, 2012
6BQG
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BU of 6bqg by Molmil
Crystal structure of 5-HT2C in complex with ergotamine
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 5-hydroxytryptamine receptor 2C,Soluble cytochrome b562, Ergotamine
著者Peng, Y, McCorvy, J.D, Harpsoe, K, Lansu, K, Yuan, S, Popov, P, Qu, L, Pu, M, Che, T, Nikolajse, L.F, Huang, X.P, Wu, Y, Shen, L, Bjorn-Yoshimoto, W.E, Ding, K, Wacker, D, Han, G.W, Cheng, J, Katritch, V, Jensen, A.A, Hanson, M.A, Zhao, S, Gloriam, D.E, Roth, B.L, Stevens, R.C, Liu, Z.
登録日2017-11-27
公開日2018-02-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology.
Cell, 172, 2018

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