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PDB: 84 results

7XM1
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BU of 7xm1 by Molmil
Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions
Descriptor: BARIUM ION, TIP60 K67E mutant
Authors:Ohara, N, Kawakami, N, Arai, R, Adachi, N, Moriya, T, Kawasaki, M, Miyamoto, K.
Deposit date:2022-04-24
Release date:2023-01-04
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Reversible Assembly of an Artificial Protein Nanocage Using Alkaline Earth Metal Ions.
J.Am.Chem.Soc., 145, 2023
3WXA
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BU of 3wxa by Molmil
X-ray crystal structural analysis of the complex between ALG-2 and Sec31A peptide
Descriptor: Programmed cell death protein 6, Protein transport protein Sec31A, ZINC ION
Authors:Takahashi, T, Suzuki, H, Kawasaki, M, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2014-07-29
Release date:2015-03-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural Analysis of the Complex between Penta-EF-Hand ALG-2 Protein and Sec31A Peptide Reveals a Novel Target Recognition Mechanism of ALG-2
Int J Mol Sci, 16, 2015
2ZAM
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BU of 2zam by Molmil
Crystal structure of mouse SKD1/VPS4B apo-form
Descriptor: Vacuolar protein sorting-associating protein 4B
Authors:Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
Deposit date:2007-10-08
Release date:2008-10-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
2ZAO
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BU of 2zao by Molmil
Crystal structure of mouse SKD1/VPS4B ADP-form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Vacuolar protein sorting-associating protein 4B
Authors:Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
Deposit date:2007-10-08
Release date:2008-10-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
6KNF
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BU of 6knf by Molmil
CryoEM map and model of Nitrite Reductase at pH 6.2
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
Deposit date:2019-08-05
Release date:2020-08-12
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
6KNG
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BU of 6kng by Molmil
CryoEM map and model of Nitrite Reductase at pH 8.1
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
Deposit date:2019-08-05
Release date:2020-08-12
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
2ZAN
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BU of 2zan by Molmil
Crystal structure of mouse SKD1/VPS4B ATP-form
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Vacuolar protein sorting-associating protein 4B
Authors:Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
Deposit date:2007-10-08
Release date:2008-10-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
2ZND
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BU of 2znd by Molmil
Crystal structure of Ca2+-free form of des3-20ALG-2
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, PHOSPHATE ION, Programmed cell death protein 6, ...
Authors:Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2008-04-22
Release date:2008-09-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
6M3X
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BU of 6m3x by Molmil
Cryo-EM structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Descriptor: FE (III) ION, Sulfur oxygenase/reductase
Authors:Sato, Y, Adachi, N, Moriya, T, Arakawa, T, Kawasaki, M, Yamada, C, Senda, T, Fushinobu, S.
Deposit date:2020-03-04
Release date:2020-07-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase fromSulfurisphaera tokodaii.
J Struct Biol X, 4, 2020
2ZN9
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BU of 2zn9 by Molmil
Crystal structure of Ca2+-bound form of des3-20ALG-2
Descriptor: CALCIUM ION, DODECAETHYLENE GLYCOL, NONAETHYLENE GLYCOL, ...
Authors:Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2008-04-22
Release date:2008-09-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZNE
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BU of 2zne by Molmil
Crystal structure of Zn2+-bound form of des3-23ALG-2 complexed with Alix ABS peptide
Descriptor: 16-meric peptide from Programmed cell death 6-interacting protein, Programmed cell death protein 6, SODIUM ION, ...
Authors:Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2008-04-22
Release date:2008-09-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZN8
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BU of 2zn8 by Molmil
Crystal structure of Zn2+-bound form of ALG-2
Descriptor: Programmed cell death protein 6, SODIUM ION, ZINC ION
Authors:Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2008-04-22
Release date:2008-09-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
7F3E
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BU of 7f3e by Molmil
Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus
Descriptor: RNA-free ribonuclease P
Authors:Teramoto, T, Koyasu, T, Adachi, N, Kawasaki, M, Moriya, T, Numata, T, Senda, T, Kakuta, Y.
Deposit date:2021-06-16
Release date:2021-08-11
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis.
J.Biol.Chem., 297, 2021
2ZRS
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BU of 2zrs by Molmil
Crystal structure of Ca2+-bound form of des3-23ALG-2
Descriptor: CALCIUM ION, Programmed cell death protein 6
Authors:Suzuki, H, Kawasaki, M, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2008-09-01
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2
ACTA CRYSTALLOGR.,SECT.F, 64, 2008
2ZVO
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BU of 2zvo by Molmil
NEMO CoZi domain in complex with diubiquitin in C2 space group
Descriptor: NF-kappa-B essential modulator, UBC protein
Authors:Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
Deposit date:2008-11-12
Release date:2009-03-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
2ZVN
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BU of 2zvn by Molmil
NEMO CoZi domain incomplex with diubiquitin in P212121 space group
Descriptor: NF-kappa-B essential modulator, UBC protein
Authors:Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
Deposit date:2008-11-12
Release date:2009-03-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
3AAJ
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BU of 3aaj by Molmil
Crystal structure of Ca2+-bound form of des3-23ALG-2deltaGF122
Descriptor: CALCIUM ION, Programmed cell death protein 6
Authors:Suzuki, H, Inuzuka, T, Kawasaki, M, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2009-11-19
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition
Bmc Struct.Biol., 10, 2010
3AAK
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BU of 3aak by Molmil
Crystal structure of Zn2+-bound form of des3-20ALG-2F122A
Descriptor: Programmed cell death protein 6, ZINC ION
Authors:Inuzuka, T, Suzuki, H, Kawasaki, M, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2009-11-19
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition
Bmc Struct.Biol., 10, 2010
2ZRT
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BU of 2zrt by Molmil
Crystal structure of Zn2+-bound form of des3-23ALG-2
Descriptor: Programmed cell death protein 6, ZINC ION
Authors:Suzuki, H, Kawasaki, M, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
Deposit date:2008-09-01
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2
ACTA CRYSTALLOGR.,SECT.F, 64, 2008
3AI4
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BU of 3ai4 by Molmil
Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein
Descriptor: SULFATE ION, yeast enhanced green fluorescent protein,DNA polymerase iota
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, M.
Deposit date:2010-05-10
Release date:2010-09-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3AI5
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BU of 3ai5 by Molmil
Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion protein
Descriptor: 1,2-ETHANEDIOL, yeast enhanced green fluorescent protein,Ubiquitin
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, M.
Deposit date:2010-05-10
Release date:2010-09-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3VHS
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BU of 3vhs by Molmil
Crystal structure of UBZ of human WRNIP1
Descriptor: ATPase WRNIP1, SODIUM ION, ZINC ION
Authors:Suzuki, N, Wakatsuki, S, Kawasaki, M.
Deposit date:2011-09-06
Release date:2012-10-10
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3VTV
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BU of 3vtv by Molmil
Crystal structure of Optineurin LIR-fused human LC3B_2-119
Descriptor: Optineurin, microtubule-associated proteins 1A/1B light chain 3B, SULFATE ION
Authors:Suzuki, H, Kawasaki, M, Kato, R, Wakatsuki, S.
Deposit date:2012-06-08
Release date:2013-06-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for phosphorylation-triggered autophagic clearance of Salmonella
Biochem.J., 454, 2013
3WAO
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BU of 3wao by Molmil
Crystal structure of Atg13 LIR-fused human LC3B_2-119
Descriptor: Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
Deposit date:2013-05-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014
3WAN
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BU of 3wan by Molmil
Crystal structure of Atg13 LIR-fused human LC3A_2-121
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3A
Authors:Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
Deposit date:2013-05-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014

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数据于2024-06-19公开中

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