Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 36 results
1L0Q
DownloadVisualize
BU of 1l0q by Molmil
Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein
Descriptor: Surface layer protein
Authors:Jing, H, Takagi, J, Liu, J.-H, Lindgren, S, Zhang, R.-G, Joachimiak, A, Wang, J.-H, Springer, T.A.
Deposit date:2002-02-12
Release date:2002-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Archaeal Surface Layer Proteins Contain beta Propeller, PKD, and beta Helix Domains and Are Related to Metazoan Cell Surface Proteins.
Structure, 10, 2002
1FDP
DownloadVisualize
BU of 1fdp by Molmil
PROENZYME OF HUMAN COMPLEMENT FACTOR D, RECOMBINANT PROFACTOR D
Descriptor: PROENZYME OF COMPLEMENT FACTOR D
Authors:Jing, H, Macon, K.J, Moore, D, Delucas, L.J, Volanakis, J.E, Narayana, S.V.L.
Deposit date:1998-12-03
Release date:1999-12-03
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of profactor D activation: from a highly flexible zymogen to a novel self-inhibited serine protease, complement factor D.
Embo J., 18, 1999
6M05
DownloadVisualize
BU of 6m05 by Molmil
Trimolecular G-quadruplex
Descriptor: DNA (5'-D(*GP*TP*TP*AP*GP*G)-3')
Authors:Jing, H.T, Fu, W.Q, Zhang, N.
Deposit date:2020-02-20
Release date:2021-01-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structural study on the self-trimerization of d(GTTAGG) into a dynamic trimolecular G-quadruplex assembly preferentially in Na+ solution with a moderate K+ tolerance.
Nucleic Acids Res., 49, 2021
1HFD
DownloadVisualize
BU of 1hfd by Molmil
HUMAN COMPLEMENT FACTOR D IN A P21 CRYSTAL FORM
Descriptor: COMPLEMENT FACTOR D
Authors:Jing, H, Babu, Y.S, Moore, D, Kilpatrick, J.M, Liu, X.-Y, Volanakis, J.E, Narayana, S.V.L.
Deposit date:1998-06-18
Release date:1999-06-22
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of native and complexed complement factor D: implications of the atypical His57 conformation and self-inhibitory loop in the regulation of specific serine protease activity.
J.Mol.Biol., 282, 1998
1DLE
DownloadVisualize
BU of 1dle by Molmil
FACTOR B SERINE PROTEASE DOMAIN
Descriptor: COMPLEMENT FACTOR B
Authors:Jing, H, Xu, Y, Carson, M, Moore, D, Macon, K.J, Volanakis, J.E, Narayana, S.V.
Deposit date:1999-12-09
Release date:2000-12-13
Last modified:2019-11-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:New structural motifs on the chymotrypsin fold and their potential roles in complement factor B.
EMBO J., 19, 2000
1BIO
DownloadVisualize
BU of 1bio by Molmil
HUMAN COMPLEMENT FACTOR D IN COMPLEX WITH ISATOIC ANHYDRIDE INHIBITOR
Descriptor: COMPLEMENT FACTOR D, GLYCEROL, ISATOIC ANHYDRIDE
Authors:Jing, H, Babu, Y.S, Moore, D, Kilpatrick, J.M, Liu, X.-Y, Volanakis, J.E, Narayana, S.V.L.
Deposit date:1998-06-18
Release date:1999-06-22
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of native and complexed complement factor D: implications of the atypical His57 conformation and self-inhibitory loop in the regulation of specific serine protease activity.
J.Mol.Biol., 282, 1998
6IHA
DownloadVisualize
BU of 6iha by Molmil
antibacterial peptide SibaCec-A
Descriptor: SibaCec-A
Authors:Jing, H, Lin, W.
Deposit date:2018-09-29
Release date:2019-10-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:antibacterial peptide SibaCec-A
To Be Published
7EA8
DownloadVisualize
BU of 7ea8 by Molmil
Human SETD2 bound to a nucleosome containing oncohistone mutations
Descriptor: 601-DNA, Histone H2A type 1-D, Histone H2B type 2-E, ...
Authors:Jing, H, Liu, Y.
Deposit date:2021-03-06
Release date:2021-07-14
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of SETD2/Set2 methyltransferase bound to a nucleosome containing oncohistone mutations.
Cell Discov, 7, 2021
7EA5
DownloadVisualize
BU of 7ea5 by Molmil
Yeast Set2 bound to a nucleosome containing oncohistone mutations
Descriptor: 601-DNA, Histone H2A, Histone H2B, ...
Authors:Jing, H, Liu, Y.
Deposit date:2021-03-06
Release date:2021-07-14
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of SETD2/Set2 methyltransferase bound to a nucleosome containing oncohistone mutations.
Cell Discov, 7, 2021
7W0X
DownloadVisualize
BU of 7w0x by Molmil
Tetrameric antiparallel G-quadruplex formed by natural human telomeric sequence
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*A)-3')
Authors:Jing, H.T, Fu, W.Q.
Deposit date:2021-11-18
Release date:2022-01-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of an alternating antiparallel tetrameric G-quadruplex assembled by the single-repeat of human telomeric DNA d(GGGTTA)
To Be Published
4R8M
DownloadVisualize
BU of 4r8m by Molmil
Human SIRT2 crystal structure in complex with BHJH-TM1
Descriptor: BHJH-TM1 peptide, NAD-dependent protein deacetylase sirtuin-2, ZINC ION, ...
Authors:Teng, Y.B, Hao, Q, Lin, H.N, Jing, H.
Deposit date:2014-09-02
Release date:2015-03-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Efficient Demyristoylase Activity of SIRT2 Revealed by Kinetic and Structural Studies
Sci Rep, 5, 2015
7DO1
DownloadVisualize
BU of 7do1 by Molmil
Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*TP*AP*GP*GP*G)-3')
Authors:Fu, W.Q, Jing, H.T, Zhang, N.
Deposit date:2020-12-11
Release date:2021-09-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T.
Nucleic Acids Res., 49, 2021
1C40
DownloadVisualize
BU of 1c40 by Molmil
BAR-HEADED GOOSE HEMOGLOBIN (AQUOMET FORM)
Descriptor: PROTEIN (HEMOGLOBIN (ALPHA CHAIN)), PROTEIN (HEMOGLOBIN (BETA CHAIN)), PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, S, Liu, X, Jing, H, Hua, Z, Zhang, R, Lu, G.
Deposit date:1999-08-03
Release date:1999-08-09
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Avian haemoglobins and structural basis of high affinity for oxygen: structure of bar-headed goose aquomet haemoglobin.
Acta Crystallogr.,Sect.D, 57, 2001
7V6V
DownloadVisualize
BU of 7v6v by Molmil
trimolecular G-quadruplexes consists of a hairpin motif and two short chains
Descriptor: DNA (5'-D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), DNA (5'-D(*TP*GP*GP*GP*A)-3')
Authors:Zhang, N, Jing, H.T, Hu, W.X.
Deposit date:2021-08-20
Release date:2023-02-08
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Conversion to Trimolecular G-Quadruplex by Spontaneous Hoogsteen Pairing-Based Strand Displacement Reaction between Bimolecular G-Quadruplex and Double G-Rich Probes.
J.Am.Chem.Soc., 2023
1EWT
DownloadVisualize
BU of 1ewt by Molmil
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM I
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1, SULFATE ION
Authors:Kunishima, N, Shimada, Y, Tsuji, Y, Jingami, H, Morikawa, K.
Deposit date:2000-04-27
Release date:2000-12-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1EWK
DownloadVisualize
BU of 1ewk by Molmil
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLUTAMIC ACID, ...
Authors:Kunishima, N, Shimada, Y, Jingami, H, Morikawa, K.
Deposit date:2000-04-26
Release date:2000-12-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1EWV
DownloadVisualize
BU of 1ewv by Molmil
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM II
Descriptor: METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1
Authors:Kunishima, N, Shimada, Y, Tsuji, Y, Jingami, H, Morikawa, K.
Deposit date:2000-04-27
Release date:2000-12-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
1ISG
DownloadVisualize
BU of 1isg by Molmil
Crystal Structure Analysis of BST-1/CD157 with ATPgammaS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISJ
DownloadVisualize
BU of 1isj by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with NMN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1CW0
DownloadVisualize
BU of 1cw0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE IN COMPLEX WITH A DUPLEX DNA
Descriptor: DNA (5'-D(*AP*CP*GP*TP*AP*CP*CP*TP*GP*GP*CP*T)-3'), DNA (5'-D(*AP*GP*C)-3'), DNA (5'-D(P*TP*AP*GP*GP*TP*AP*CP*GP*T)-3'), ...
Authors:Tsutakawa, S.E, Jingami, H, Morikawa, K.
Deposit date:1999-08-25
Release date:1999-12-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex.
Cell(Cambridge,Mass.), 99, 1999
1ISH
DownloadVisualize
BU of 1ish by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNADP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ETHENO-NADP, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISF
DownloadVisualize
BU of 1isf by Molmil
Crystal Structure Analysis of BST-1/CD157
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISI
DownloadVisualize
BU of 1isi by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNAD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICOTINAMIDE, [[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-imidazo[2,1-f]purin-6-ium-3-yl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-3,4-dihydroxy-5-oxidanidyl-oxolan-2-yl]methyl phosphate, ...
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
1ISM
DownloadVisualize
BU of 1ism by Molmil
Crystal Structure Analysis of BST-1/CD157 complexed with nicotinamide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICOTINAMIDE, bone marrow stromal cell antigen 1
Authors:Yamamoto-Katayama, S, Ariyoshi, M, Ishihara, K, Hirano, T, Jingami, H, Morikawa, K.
Deposit date:2001-12-05
Release date:2002-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities.
J.Mol.Biol., 316, 2002
2EGK
DownloadVisualize
BU of 2egk by Molmil
Crystal Structure of Tamalin PDZ-Intrinsic Ligand Fusion Protein
Descriptor: General receptor for phosphoinositides 1-associated scaffold protein, PHOSPHATE ION
Authors:Sugi, T, Oyama, T, Muto, T, Nakanishi, S, Morikawa, K, Jingami, H.
Deposit date:2007-03-01
Release date:2007-05-08
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structures of autoinhibitory PDZ domain of Tamalin: implications for metabotropic glutamate receptor trafficking regulation
Embo J., 26, 2007

 

12>

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon