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PDB: 231 results

1QRP
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Human pepsin 3A in complex with a phosphonate inhibitor IVA-VAL-VAL-LEU(P)-(O)PHE-ALA-ALA-OME
Descriptor: PEPSIN 3A, methyl N-[(2S)-2-({(S)-hydroxy[(1R)-3-methyl-1-{[N-(3-methylbutanoyl)-L-valyl-L-valyl]amino}butyl]phosphoryl}oxy)-3-phenylpropanoyl]-L-alanyl-L-alaninate
Authors:Fujinaga, M, Cherney, M.M, Tarasova, N.I, Bartlett, P.A, Hanson, J.E, James, M.N.G.
Deposit date:1999-06-15
Release date:1999-06-18
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural study of the complex between human pepsin and a phosphorus-containing peptidic -transition-state analog.
Acta Crystallogr.,Sect.D, 56, 2000
1SCU
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THE CRYSTAL STRUCTURE OF SUCCINYL-COA SYNTHETASE FROM ESCHERICHIA COLI AT 2.5 ANGSTROMS RESOLUTION
Descriptor: COENZYME A, SUCCINYL-COA SYNTHETASE, ALPHA SUBUNIT, ...
Authors:Wolodko, W.T, Fraser, M.E, James, M.N.G, Bridger, W.A.
Deposit date:1993-11-18
Release date:1995-04-20
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of succinyl-CoA synthetase from Escherichia coli at 2.5-A resolution.
J.Biol.Chem., 269, 1994
1SGT
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REFINED CRYSTAL STRUCTURE OF STREPTOMYCES GRISEUS TRYPSIN AT 1.7 ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, TRYPSIN
Authors:Read, R.J, James, M.N.G.
Deposit date:1988-04-13
Release date:1988-07-16
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Refined crystal structure of Streptomyces griseus trypsin at 1.7 A resolution.
J.Mol.Biol., 200, 1988
2I6U
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Crystal Structure of Ornithine Carbamoyltransferase complexed with Carbamoyl Phosphate and L-Norvaline from Mycobacterium tuberculosis (Rv1656) at 2.2 A
Descriptor: NORVALINE, Ornithine carbamoyltransferase, PHOSPHORIC ACID MONO(FORMAMIDE)ESTER, ...
Authors:Sankaranarayanan, R, Moradian, F, Cherney, L.T, Garen, C, Cherney, M.M, James, M.N.G, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-08-29
Release date:2007-06-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structures of ornithine carbamoyltransferase from Mycobacterium tuberculosis and its ternary complex with carbamoyl phosphate and L-norvaline reveal the enzyme's catalytic mechanism
J.Mol.Biol., 375, 2008
2DJ5
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Crystal Structure of the vitamin B12 biosynthetic cobaltochelatase, CbiXS, from Archaeoglobus fulgidus
Descriptor: GLYCEROL, PHOSPHATE ION, Sirohydrochlorin cobaltochelatase
Authors:Yin, J, Cherney, M.M, James, M.N.G.
Deposit date:2006-03-31
Release date:2006-09-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal Structure of the Vitamin B(12) Biosynthetic Cobaltochelatase, CbiX (S), from Archaeoglobus Fulgidus
J.STRUCT.FUNCT.GENOM., 7, 2006
2BDX
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BU of 2bdx by Molmil
X-ray Crystal Structure of dihydromicrocystin-LA bound to Protein Phosphatase-1
Descriptor: DIHYDROMICROCYSTIN-LA, MANGANESE (II) ION, Serine/threonine protein phosphatase PP1-gamma catalytic subunit
Authors:Maynes, J.T, Luu, H.A, Cherney, M.M, Andersen, R.J, Williams, D, Holmes, C.F, James, M.N.
Deposit date:2005-10-21
Release date:2006-01-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of Protein Phosphatase-1 Bound to Motuporin and Dihydromicrocystin-LA: Elucidation of the Mechanism of Enzyme Inhibition by Cyanobacterial Toxins.
J.Mol.Biol., 356, 2006
2AQ6
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X-ray crystal structure of mycobacterium tuberculosis pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 1.7 a resolution
Descriptor: PYRIDOXAL-5'-PHOSPHATE, PYRIDOXINE 5'-PHOSPHATE OXIDASE
Authors:Biswal, B.K, Cherney, M.M, Wang, M, Garen, C, James, M.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-08-17
Release date:2005-08-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of Mycobacterium tuberculosispyridoxine 5'-phosphate oxidase and its complexes with flavin mononucleotide and pyridoxal 5'-phosphate.
Acta Crystallogr.,Sect.D, 61, 2005
2BCD
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X-ray crystal structure of Protein Phosphatase-1 with the marine toxin motuporin bound
Descriptor: BETA-MERCAPTOETHANOL, MANGANESE (II) ION, MOTUPORIN, ...
Authors:Maynes, J.T, Luu, H.A, Cherney, M.M, Andersen, R.J, Williams, D, Holmes, C.F, James, M.N.
Deposit date:2005-10-19
Release date:2006-01-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Protein Phosphatase-1 Bound to Motuporin and Dihydromicrocystin-LA: Elucidation of the Mechanism of Enzyme Inhibition by Cyanobacterial Toxins.
J.Mol.Biol., 356, 2006
2ASF
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Crystal structure of the conserved hypothetical protein Rv2074 from Mycobacterium tuberculosis 1.6 A
Descriptor: CITRIC ACID, Hypothetical protein Rv2074, SODIUM ION
Authors:Biswal, B.K, Au, K, Cherney, M.M, Garen, C, James, M.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-08-23
Release date:2005-10-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.
Acta Crystallogr.,Sect.F, 62, 2006
2D41
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X-ray crystal structure of hepatitis C virus RNA-dependent RNA polymerase in complex with non-nucleoside inhibitor
Descriptor: 5'-ACETYL-4-{[(2,4-DIMETHYLPHENYL)SULFONYL]AMINO}-2,2'-BITHIOPHENE-5-CARBOXYLIC ACID, polyprotein
Authors:Biswal, B.K, Wang, M, Cherney, M.M, Chan, L, Yannopoulos, C.G, Bilimoria, D, Bedard, J, James, M.N.G.
Deposit date:2005-10-05
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Non-nucleoside Inhibitors Binding to Hepatitis C Virus NS5B Polymerase Reveal a Novel Mechanism of Inhibition
J.Mol.Biol., 361, 2006
2D3Z
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X-ray crystal structure of hepatitis C virus RNA-dependent RNA polymerase in complex with non-nucleoside analogue inhibitor
Descriptor: 5-(4-FLUOROPHENYL)-3-{[(4-METHYLPHENYL)SULFONYL]AMINO}THIOPHENE-2-CARBOXYLIC ACID, polyprotein
Authors:Biswal, B.K, Wang, M, Cherney, M.M, Chan, L, Yannopoulos, C.G, Bilimoria, D, Bedard, J, James, M.N.G.
Deposit date:2005-10-04
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Non-nucleoside Inhibitors Binding to Hepatitis C Virus NS5B Polymerase Reveal a Novel Mechanism of Inhibition
J.Mol.Biol., 361, 2006
2GKV
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Crystal structure of the SGPB:P14'-Ala32 OMTKY3-del(1-5) complex
Descriptor: Ovomucoid, Streptogrisin B
Authors:Lee, T.W, Qasim, M.A, Laskowski Jr, M, James, M.N.G.
Deposit date:2006-04-03
Release date:2007-02-13
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insights into the Non-additivity Effects in the Sequence-to-Reactivity Algorithm for Serine Peptidases and their Inhibitors.
J.Mol.Biol., 367, 2007
2H6M
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An episulfide cation (thiiranium ring) trapped in the active site of HAV 3C proteinase inactivated by peptide-based ketone inhibitors
Descriptor: N-ACETYL-LEUCYL-ALANYL-ALANYL-(N,N-DIMETHYL)-GLUTAMINE-(1,4-DIOXO-3,4-DIHYDRO-1H-PHTHALAZIN-2-YL)METHYLKETONE INHIBITOR, N-[(BENZYLOXY)CARBONYL]-L-ALANINE, Picornain 3C
Authors:Yin, J, Cherney, M.M, Bergmann, E.M, James, M.N.
Deposit date:2006-05-31
Release date:2006-08-08
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:An episulfide cation (thiiranium ring) trapped in the active site of HAV 3C proteinase inactivated by peptide-based ketone inhibitors.
J.Mol.Biol., 361, 2006
2GKT
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Crystal structure of the P14'-Ala32 variant of the N-terminally truncated OMTKY3-del(1-5)
Descriptor: Ovomucoid
Authors:Lee, T.W, Qasim, M.A, Laskowski Jr, M, James, M.N.G.
Deposit date:2006-04-03
Release date:2007-02-13
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Structural Insights into the Non-additivity Effects in the Sequence-to-Reactivity Algorithm for Serine Peptidases and their Inhibitors.
J.Mol.Biol., 367, 2007
2CXV
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Dual Modes of Modification of Hepatitis A Virus 3C Protease by a Serine-Derived betaLactone: Selective Crystallization and High-resolution Structure of the His-102 Adduct
Descriptor: N-[(BENZYLOXY)CARBONYL]-L-ALANINE, Probable protein P3C
Authors:Yin, J, Bergmann, E.M, Cherney, M.M, Lall, M.S, Jain, R.P, Vederas, J.C, James, M.N.G.
Deposit date:2005-07-01
Release date:2005-12-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Dual Modes of Modification of Hepatitis A Virus 3C Protease by a Serine-derived beta-Lactone: Selective Crystallization and Formation of a Functional Catalytic Triad in the Active Site
J.MOL.BIOL., 354, 2005
2GKR
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Crystal structure of the N-terminally truncated OMTKY3-del(1-5)
Descriptor: CHLORIDE ION, Ovomucoid
Authors:Lee, T.W, Qasim, M.A, Laskowski Jr, M, James, M.N.G.
Deposit date:2006-04-03
Release date:2007-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structural Insights into the Non-additivity Effects in the Sequence-to-Reactivity Algorithm for Serine Peptidases and their Inhibitors.
J.Mol.Biol., 367, 2007
2HRV
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BU of 2hrv by Molmil
2A CYSTEINE PROTEINASE FROM HUMAN RHINOVIRUS 2
Descriptor: 2A CYSTEINE PROTEINASE, ZINC ION
Authors:Petersen, J.F.W, Cherney, M.M, Liebig, H.-D, Skern, T, Kuechler, E, James, M.N.G.
Deposit date:1999-04-29
Release date:2000-05-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The structure of the 2A proteinase from a common cold virus: a proteinase responsible for the shut-off of host-cell protein synthesis.
EMBO J., 18, 1999
2D3U
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X-ray crystal structure of hepatitis C virus RNA dependent RNA polymerase in complex with non-nucleoside analogue inhibitor
Descriptor: 5-(4-CYANOPHENYL)-3-{[(2-METHYLPHENYL)SULFONYL]AMINO}THIOPHENE-2-CARBOXYLIC ACID, polyprotein
Authors:Biswal, B.K, Wang, M, Cherney, M.M, Chan, L, Yannopoulos, C.G, Bilimoria, D, Bedard, J, James, M.N.G.
Deposit date:2005-10-02
Release date:2006-08-01
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Non-nucleoside Inhibitors Binding to Hepatitis C Virus NS5B Polymerase Reveal a Novel Mechanism of Inhibition
J.Mol.Biol., 361, 2006
1KHW
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Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Mn2+
Descriptor: MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Ng, K.K, Cherney, M.M, Vazquez, A.L, Machin, A, Alonso, J.M, Parra, F, James, M.N.
Deposit date:2001-12-01
Release date:2002-01-16
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase.
J.Biol.Chem., 277, 2002
1KHV
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Crystal Structure of Rabbit Hemorrhagic Disease Virus RNA-dependent RNA polymerase complexed with Lu3+
Descriptor: LUTETIUM (III) ION, RNA-DIRECTED RNA POLYMERASE
Authors:Ng, K.K, Cherney, M.M, Vazquez, A.L, Machin, A, Alonso, J.M, Parra, F, James, M.N.
Deposit date:2001-12-01
Release date:2002-01-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase.
J.Biol.Chem., 277, 2002
1L1N
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POLIOVIRUS 3C PROTEINASE
Descriptor: Genome polyprotein: Picornain 3C
Authors:Mosimann, S.C, Chernaia, M.M, Sia, S, Plotch, S, James, M.N.G.
Deposit date:2002-02-19
Release date:2002-04-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Refined X-ray crystallographic structure of the poliovirus 3C gene product.
J.Mol.Biol., 273, 1997
1K2I
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Crystal Structure of Gamma-Chymotrypsin in Complex with 7-Hydroxycoumarin
Descriptor: 2,4-DIHYDROXY-TRANS CINNAMIC ACID, CHYMOTRYPSINOGEN A, SULFATE ION
Authors:Ghani, U, Ng, K.K.S, Atta-ur-Rahman, Choudhary, M.I, Ullah, N, James, M.N.G.
Deposit date:2001-09-27
Release date:2001-12-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of gamma-chymotrypsin in complex with 7-hydroxycoumarin.
J.Mol.Biol., 314, 2001
1HTR
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CRYSTAL AND MOLECULAR STRUCTURES OF HUMAN PROGASTRICSIN AT 1.62 ANGSTROMS RESOLUTION
Descriptor: GASTRICSIN, PROGASTRICSIN (PRO SEGMENT)
Authors:Moore, S.A, Sielecki, A.R, James, M.N.G.
Deposit date:1994-10-21
Release date:1995-01-26
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal and molecular structures of human progastricsin at 1.62 A resolution.
J.Mol.Biol., 247, 1995
1OYV
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Crystal structure of tomato inhibitor-II in a ternary complex with subtilisin Carlsberg
Descriptor: CALCIUM ION, Subtilisin Carlsberg, Wound-induced proteinase inhibitor-II
Authors:Barrette-Ng, I.H, Ng, K.K, Cherney, M.M, Pearce, G, Ryan, C.A, James, M.N.
Deposit date:2003-04-07
Release date:2003-07-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of inhibition revealed by a 1:2 complex of the two-headed tomato inhibitor-II and subtilisin Carlsberg
J.Biol.Chem., 278, 2003
1PFZ
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PROPLASMEPSIN II FROM PLASMODIUM FALCIPARUM
Descriptor: GLYCEROL, PROPLASMEPSIN II
Authors:Bernstein, N.K, Cherney, M.M, Loetscher, H, Ridley, R.G, James, M.N.G.
Deposit date:1998-07-07
Release date:1999-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the novel aspartic proteinase zymogen proplasmepsin II from plasmodium falciparum.
Nat.Struct.Biol., 6, 1999

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